Wall clock time and date at job start Tue Mar 31 2020 14:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27577 * 126.41731 * 2 1 4 4 N 1.39144 * 113.16603 * 179.97438 * 3 2 1 5 5 C 1.40153 * 124.43994 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01269 * 179.75317 * 5 4 3 7 7 C 1.38079 * 119.98013 * 179.72155 * 6 5 4 8 8 C 1.38735 * 120.01732 * 0.57725 * 7 6 5 9 9 O 1.35959 * 119.98955 * 179.71871 * 8 7 6 10 10 C 1.42904 * 116.99282 * 359.97438 * 9 8 7 11 11 F 1.39901 * 109.47334 * 299.99452 * 10 9 8 12 12 F 1.39895 * 109.47456 * 60.00102 * 10 9 8 13 13 C 1.38740 * 120.02658 * 359.69957 * 8 7 6 14 14 C 1.38067 * 120.01810 * 359.97438 * 13 8 7 15 15 C 1.35311 * 111.16038 * 0.09580 * 4 3 2 16 16 O 1.21306 * 127.67752 * 179.91622 * 15 4 3 17 17 C 1.51438 * 126.41824 * 180.02562 * 2 1 3 18 18 H 1.09004 * 110.60953 * 61.32614 * 17 2 1 19 19 C 1.53001 * 110.60909 * 298.51390 * 17 2 1 20 20 C 1.50694 * 109.47168 * 177.15055 * 19 17 2 21 21 H 1.08000 * 120.00563 * 0.02562 * 20 19 17 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 H 1.09007 * 109.47153 * 269.99989 * 1 2 3 29 29 H 1.08997 * 109.47399 * 29.99382 * 1 2 3 30 30 H 1.09000 * 109.47500 * 149.99842 * 1 2 3 31 31 H 1.07997 * 120.01540 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.99450 * 180.29462 * 7 6 5 33 33 H 1.09003 * 109.46711 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.98634 * 180.02562 * 13 8 7 35 35 H 1.08004 * 120.00484 * 180.02562 * 14 13 8 36 36 H 1.09007 * 109.46922 * 57.14756 * 19 17 2 37 37 H 1.09003 * 109.46836 * 297.15512 * 19 17 2 38 38 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7077 0.0006 5 6 4.6552 1.6511 0.0002 6 6 5.9783 1.2294 0.0060 7 6 6.9989 2.1594 -0.0002 8 6 6.7028 3.5148 -0.0002 9 8 7.7082 4.4300 -0.0005 10 6 9.0451 3.9250 -0.0003 11 9 9.2483 3.1437 1.1423 12 9 9.2483 3.1429 -1.1423 13 6 5.3811 3.9367 -0.0002 14 6 4.3596 3.0079 -0.0008 15 6 3.8049 -0.6326 -0.0011 16 8 4.8579 -1.2348 -0.0026 17 6 2.4060 -1.2186 -0.0005 18 1 2.2399 -1.8176 -0.8960 19 6 2.1756 -2.0584 1.2575 20 6 3.0304 -3.2980 1.1975 21 1 3.6740 -3.4696 0.3473 22 6 2.9909 -4.2133 2.2280 23 7 2.2075 -4.0041 3.2635 24 14 4.0499 -5.7502 2.1532 25 1 3.2935 -6.8407 1.4869 26 1 5.2861 -5.4625 1.3823 27 1 4.4120 -6.1692 3.5311 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 6.2090 0.1744 0.0104 32 1 8.0280 1.8317 -0.0005 33 1 9.7481 4.7580 -0.0011 34 1 5.1514 4.9920 -0.0005 35 1 3.3308 3.3366 -0.0012 36 1 1.1252 -2.3438 1.3164 37 1 2.4434 -1.4746 2.1381 38 1 2.1794 -4.6482 3.9882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601939573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:11 Heat of formation + Delta-G solvation = -95.124124 kcal Electronic energy + Delta-G solvation = -26951.861340 eV Core-core repulsion = 22624.869583 eV Total energy + Delta-G solvation = -4326.991757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.54055 -47.53327 -41.28102 -39.83015 -37.57093 -37.09678 -34.13649 -32.86241 -31.08319 -30.53136 -29.97983 -27.74332 -26.35850 -25.65729 -23.48931 -22.68280 -21.87909 -20.10681 -19.54278 -19.12671 -18.14695 -18.09799 -17.57189 -16.39457 -16.18075 -15.72574 -15.02891 -14.83076 -14.73683 -14.52257 -14.30830 -14.11451 -13.97337 -13.84817 -13.70644 -13.39620 -13.27629 -13.13155 -12.90525 -12.61444 -12.33111 -12.25853 -12.20704 -11.63331 -11.49517 -11.35283 -11.04452 -10.95043 -10.64705 -10.36149 -9.71375 -9.48831 -9.28427 -9.05175 -8.89666 -8.43020 -7.53824 -6.08928 -4.11004 1.21035 1.31996 1.96681 2.37929 2.56227 3.00396 3.26974 3.31185 3.37812 3.45535 3.84101 4.06655 4.20412 4.39702 4.42263 4.55600 4.81212 4.86659 5.12379 5.22807 5.29606 5.35827 5.45346 5.64847 5.67220 5.79736 5.81261 5.94248 6.01863 6.24358 6.30127 6.33005 6.43998 6.64265 6.73074 7.11494 7.31803 7.36425 7.88906 7.95384 8.19552 8.28689 8.94156 9.54246 11.02227 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.003523 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.649398 B = 7945.735627 C = 9519.010309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.119 3.881 3 N -0.261 5.261 4 N -0.426 5.426 5 C 0.168 3.832 6 C -0.120 4.120 7 C -0.158 4.158 8 C 0.070 3.930 9 O -0.322 6.322 10 C 0.411 3.589 11 F -0.199 7.199 12 F -0.200 7.200 13 C -0.110 4.110 14 C -0.107 4.107 15 C 0.511 3.489 16 O -0.463 6.463 17 C -0.131 4.131 18 H 0.129 0.871 19 C 0.054 3.946 20 C -0.520 4.520 21 H 0.065 0.935 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.271 1.271 27 H -0.286 1.286 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.179 0.821 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.042 0.958 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 17.549 -7.746 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 N -0.067 5.067 4 N -0.236 5.236 5 C 0.074 3.926 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.026 3.974 9 O -0.240 6.240 10 C 0.320 3.680 11 F -0.180 7.180 12 F -0.182 7.182 13 C -0.129 4.129 14 C -0.128 4.128 15 C 0.300 3.700 16 O -0.332 6.332 17 C -0.155 4.155 18 H 0.146 0.854 19 C 0.016 3.984 20 C -0.558 4.558 21 H 0.084 0.916 22 C -0.141 4.141 23 N -0.535 5.535 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.196 1.196 27 H -0.212 1.212 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.177 0.823 32 H 0.154 0.846 33 H 0.195 0.805 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.419 18.279 -7.582 20.518 hybrid contribution 0.905 -1.928 0.167 2.137 sum 6.324 16.351 -7.415 19.035 Atomic orbital electron populations 1.20360 0.84651 1.03935 1.04420 1.25645 0.97585 0.91707 0.92328 1.74595 0.87689 1.26698 1.17686 1.47276 1.02509 1.05796 1.68064 1.17665 0.85934 0.88482 1.00529 1.21352 0.89682 1.02486 1.00583 1.21327 1.00525 0.91153 1.04712 1.18786 0.87759 0.87747 1.03074 1.86573 1.13461 1.34858 1.89118 1.23310 0.85780 0.86949 0.71917 1.93113 1.94764 1.78146 1.52011 1.93101 1.94776 1.78151 1.52129 1.20180 0.88443 1.00280 1.03971 1.20673 0.99981 0.90119 1.01978 1.21671 0.92504 0.81053 0.74771 1.90640 1.31066 1.65326 1.46183 1.22141 0.89867 0.96439 1.07031 0.85398 1.18936 0.98905 0.93273 0.87268 1.21161 1.24466 1.04291 1.05856 0.91645 1.24951 0.95490 0.98466 0.95145 1.69947 1.38548 1.36360 1.08663 0.86525 0.81018 0.82865 0.77329 1.20538 1.19605 1.21215 0.88882 0.90216 0.89180 0.82308 0.84606 0.80457 0.84504 0.83785 0.94035 0.96116 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.49 36.00 0.38 -0.46 16 2 C 0.12 1.92 6.93 -78.72 -0.55 1.37 16 3 N -0.26 -4.49 11.19 35.54 0.40 -4.10 16 4 N -0.43 -8.26 3.74 -9.37 -0.04 -8.30 16 5 C 0.17 3.00 6.66 -83.59 -0.56 2.44 16 6 C -0.12 -2.15 9.35 -39.41 -0.37 -2.52 16 7 C -0.16 -2.44 8.25 -39.46 -0.33 -2.76 16 8 C 0.07 0.96 6.48 -39.21 -0.25 0.71 16 9 O -0.32 -3.66 10.43 -19.61 -0.20 -3.86 16 10 C 0.41 3.60 5.97 101.05 0.60 4.20 16 11 F -0.20 -2.21 15.58 2.25 0.04 -2.17 16 12 F -0.20 -2.14 15.58 2.25 0.04 -2.11 16 13 C -0.11 -1.43 9.98 -39.46 -0.39 -1.82 16 14 C -0.11 -1.58 9.61 -39.41 -0.38 -1.96 16 15 C 0.51 11.14 7.46 -10.27 -0.08 11.07 16 16 O -0.46 -11.29 14.12 5.53 0.08 -11.21 16 17 C -0.13 -2.60 2.98 -92.08 -0.27 -2.88 16 18 H 0.13 2.35 8.14 -51.93 -0.42 1.93 16 19 C 0.05 1.31 4.50 -27.89 -0.13 1.19 16 20 C -0.52 -14.35 8.39 -34.44 -0.29 -14.64 16 21 H 0.07 1.84 7.24 -52.49 -0.38 1.46 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 24 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.16 3.15 5.35 -52.49 -0.28 2.87 16 32 H 0.14 1.97 5.09 -52.49 -0.27 1.70 16 33 H 0.18 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.14 1.94 7.60 -52.48 -0.40 1.54 16 36 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -33.69 335.93 -5.46 -39.15 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.84 Total: 0.45 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.70 Total: -4.43 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 1.10 Total: -37.80 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.13 Total: -15.07 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.07 Total: -4.28 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.69 -5.46 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601939573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.972 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds