Wall clock time and date at job start Tue Mar 31 2020 14:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27577 * 126.41731 * 2 1 4 4 N 1.39144 * 113.16603 * 179.97438 * 3 2 1 5 5 C 1.40153 * 124.43994 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01269 * 179.75317 * 5 4 3 7 7 C 1.38079 * 119.98013 * 179.72155 * 6 5 4 8 8 C 1.38735 * 120.01732 * 0.57725 * 7 6 5 9 9 O 1.35959 * 119.98955 * 179.71871 * 8 7 6 10 10 C 1.42904 * 116.99282 * 359.97438 * 9 8 7 11 11 F 1.39901 * 109.47334 * 299.99452 * 10 9 8 12 12 F 1.39895 * 109.47456 * 60.00102 * 10 9 8 13 13 C 1.38740 * 120.02658 * 359.69957 * 8 7 6 14 14 C 1.38067 * 120.01810 * 359.97438 * 13 8 7 15 15 C 1.35311 * 111.16038 * 0.09580 * 4 3 2 16 16 O 1.21306 * 127.67752 * 179.91622 * 15 4 3 17 17 C 1.51438 * 126.41824 * 180.02562 * 2 1 3 18 18 H 1.09004 * 110.60953 * 61.32614 * 17 2 1 19 19 C 1.53001 * 110.60909 * 298.51390 * 17 2 1 20 20 C 1.50694 * 109.47168 * 177.15055 * 19 17 2 21 21 H 1.08000 * 120.00563 * 0.02562 * 20 19 17 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 H 1.09007 * 109.47153 * 269.99989 * 1 2 3 29 29 H 1.08997 * 109.47399 * 29.99382 * 1 2 3 30 30 H 1.09000 * 109.47500 * 149.99842 * 1 2 3 31 31 H 1.07997 * 120.01540 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.99450 * 180.29462 * 7 6 5 33 33 H 1.09003 * 109.46711 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.98634 * 180.02562 * 13 8 7 35 35 H 1.08004 * 120.00484 * 180.02562 * 14 13 8 36 36 H 1.09007 * 109.46922 * 57.14756 * 19 17 2 37 37 H 1.09003 * 109.46836 * 297.15512 * 19 17 2 38 38 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7077 0.0006 5 6 4.6552 1.6511 0.0002 6 6 5.9783 1.2294 0.0060 7 6 6.9989 2.1594 -0.0002 8 6 6.7028 3.5148 -0.0002 9 8 7.7082 4.4300 -0.0005 10 6 9.0451 3.9250 -0.0003 11 9 9.2483 3.1437 1.1423 12 9 9.2483 3.1429 -1.1423 13 6 5.3811 3.9367 -0.0002 14 6 4.3596 3.0079 -0.0008 15 6 3.8049 -0.6326 -0.0011 16 8 4.8579 -1.2348 -0.0026 17 6 2.4060 -1.2186 -0.0005 18 1 2.2399 -1.8176 -0.8960 19 6 2.1756 -2.0584 1.2575 20 6 3.0304 -3.2980 1.1975 21 1 3.6740 -3.4696 0.3473 22 6 2.9909 -4.2133 2.2280 23 7 2.2075 -4.0041 3.2635 24 14 4.0499 -5.7502 2.1532 25 1 3.2935 -6.8407 1.4869 26 1 5.2861 -5.4625 1.3823 27 1 4.4120 -6.1692 3.5311 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 6.2090 0.1744 0.0104 32 1 8.0280 1.8317 -0.0005 33 1 9.7481 4.7580 -0.0011 34 1 5.1514 4.9920 -0.0005 35 1 3.3308 3.3366 -0.0012 36 1 1.1252 -2.3438 1.3164 37 1 2.4434 -1.4746 2.1381 38 1 2.1794 -4.6482 3.9882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601939573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:11 Heat of formation + Delta-G solvation = -116.658213 kcal Electronic energy + Delta-G solvation = -26952.795129 eV Core-core repulsion = 22624.869583 eV Total energy + Delta-G solvation = -4327.925545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.32952 -48.33803 -42.75163 -40.93142 -38.80072 -38.60396 -35.83675 -34.57320 -32.38087 -32.22757 -31.09310 -28.91369 -27.97971 -26.75409 -25.04405 -24.04470 -23.27579 -21.61814 -20.89113 -20.09372 -19.25109 -18.89498 -18.82085 -18.36603 -17.40514 -17.19257 -16.58061 -16.41812 -16.05604 -15.72501 -15.63971 -15.26575 -15.01290 -14.94857 -14.67933 -14.66845 -14.44290 -14.35560 -14.19012 -13.92819 -13.87582 -13.51102 -13.33054 -13.20771 -13.07353 -12.85076 -12.66203 -12.55592 -12.17920 -12.13112 -11.62808 -11.34506 -10.69528 -10.65364 -10.47175 -10.24249 -8.85129 -8.25994 -6.33546 -0.03515 0.11489 0.53771 1.13582 1.34833 1.37220 1.48769 1.52622 1.59401 2.37555 2.56164 2.58653 2.79458 3.09324 3.12912 3.47499 3.63812 3.67447 3.73473 3.77648 3.99875 4.17210 4.21865 4.28880 4.49780 4.60630 4.71846 4.84252 4.88184 4.94110 5.05138 5.20244 5.24668 5.28847 5.33301 5.43368 5.54998 5.71741 5.93127 6.09799 6.52382 6.69897 6.77890 7.34608 8.85100 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.003523 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.649398 B = 7945.735627 C = 9519.010309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.138 3.862 3 N -0.263 5.263 4 N -0.428 5.428 5 C 0.132 3.868 6 C -0.142 4.142 7 C -0.165 4.165 8 C 0.079 3.921 9 O -0.317 6.317 10 C 0.402 3.598 11 F -0.214 7.214 12 F -0.213 7.213 13 C -0.098 4.098 14 C -0.097 4.097 15 C 0.493 3.507 16 O -0.507 6.507 17 C -0.134 4.134 18 H 0.142 0.858 19 C 0.067 3.933 20 C -0.534 4.534 21 H 0.053 0.947 22 C 0.012 3.988 23 N -0.924 5.924 24 Si 0.953 3.047 25 H -0.261 1.261 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.243 0.757 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.048 0.952 37 H -0.015 1.015 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 19.852 -8.408 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 N -0.069 5.069 4 N -0.238 5.238 5 C 0.039 3.961 6 C -0.163 4.163 7 C -0.185 4.185 8 C 0.035 3.965 9 O -0.235 6.235 10 C 0.313 3.687 11 F -0.196 7.196 12 F -0.195 7.195 13 C -0.117 4.117 14 C -0.117 4.117 15 C 0.283 3.717 16 O -0.379 6.379 17 C -0.157 4.157 18 H 0.159 0.841 19 C 0.029 3.971 20 C -0.573 4.573 21 H 0.071 0.929 22 C -0.187 4.187 23 N -0.564 5.564 24 Si 0.778 3.222 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.258 0.742 34 H 0.194 0.806 35 H 0.178 0.822 36 H 0.066 0.934 37 H 0.003 0.997 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.800 20.620 -8.253 22.723 hybrid contribution 1.175 -2.525 0.364 2.809 sum 5.975 18.094 -7.888 20.624 Atomic orbital electron populations 1.20662 0.80607 1.06444 1.05564 1.26286 0.99354 0.89082 0.90683 1.74642 0.86593 1.26628 1.19046 1.47320 1.03706 1.05222 1.67514 1.17969 0.85468 0.89620 1.03018 1.21186 0.90915 1.01582 1.02646 1.21356 1.00009 0.91941 1.05159 1.18917 0.89121 0.87295 1.01157 1.86602 1.14055 1.34172 1.88629 1.24421 0.85412 0.88175 0.70698 1.93085 1.94701 1.78901 1.52939 1.93077 1.94692 1.78837 1.52868 1.20597 0.87506 1.01812 1.01767 1.20893 1.01375 0.88759 1.00655 1.22027 0.92667 0.82305 0.74671 1.90602 1.32450 1.66508 1.48383 1.22033 0.90323 0.97837 1.05515 0.84072 1.18637 0.98354 0.92219 0.87897 1.21463 1.24590 1.05681 1.05519 0.92889 1.25704 0.96673 1.01338 0.94935 1.70027 1.39770 1.37436 1.09215 0.85629 0.79125 0.80014 0.77421 1.18592 1.20640 1.20630 0.88101 0.87054 0.87353 0.85382 0.84397 0.74194 0.80557 0.82170 0.93433 0.99658 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 10.49 71.24 0.75 -0.70 16 2 C 0.14 4.28 6.93 46.83 0.32 4.60 16 3 N -0.26 -8.90 11.19 -40.84 -0.46 -9.35 16 4 N -0.43 -17.08 3.74 -301.64 -1.13 -18.21 16 5 C 0.13 4.83 6.66 38.11 0.25 5.09 16 6 C -0.14 -5.40 9.35 22.38 0.21 -5.19 16 7 C -0.17 -5.20 8.25 22.35 0.18 -5.01 16 8 C 0.08 2.06 6.48 22.51 0.15 2.20 16 9 O -0.32 -6.28 10.43 -93.09 -0.97 -7.25 16 10 C 0.40 6.04 5.97 113.37 0.68 6.71 16 11 F -0.21 -4.51 15.58 44.97 0.70 -3.81 16 12 F -0.21 -4.28 15.58 44.97 0.70 -3.58 16 13 C -0.10 -2.30 9.98 22.35 0.22 -2.07 16 14 C -0.10 -2.72 9.61 22.38 0.22 -2.51 16 15 C 0.49 22.69 7.46 87.88 0.66 23.34 16 16 O -0.51 -26.63 14.12 -3.11 -0.04 -26.67 16 17 C -0.13 -5.41 2.98 -11.74 -0.03 -5.45 16 18 H 0.14 5.27 8.14 -2.39 -0.02 5.25 16 19 C 0.07 3.34 4.50 29.85 0.13 3.48 16 20 C -0.53 -30.47 8.39 25.60 0.21 -30.26 16 21 H 0.05 3.10 7.24 -2.91 -0.02 3.08 16 22 C 0.01 0.70 5.46 84.66 0.46 1.16 16 23 N -0.92 -54.78 13.29 21.45 0.28 -54.49 16 24 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 28 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.13 5.64 5.35 -2.91 -0.02 5.63 16 32 H 0.14 4.14 5.09 -2.91 -0.01 4.12 16 33 H 0.24 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.16 3.94 7.60 -2.91 -0.02 3.92 16 36 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -77.60 335.93 6.64 -70.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.12 Total: 9.17 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.41 Total: -4.59 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.30 Total: -82.05 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.02 Total: -33.92 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 1.40 Total: -7.39 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.60 6.64 -70.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601939573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.703 kcal (2) G-P(sol) polarization free energy of solvation -77.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds