Wall clock time and date at job start Tue Mar 31 2020 13:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38302 * 119.92974 * 2 1 4 4 C 1.38088 * 120.06770 * 180.02562 * 3 2 1 5 5 C 1.38882 * 119.93267 * 359.97438 * 4 3 2 6 6 N 1.40081 * 120.07214 * 180.02562 * 5 4 3 7 7 C 1.36961 * 126.42135 * 270.69241 * 6 5 4 8 8 S 1.76198 * 125.10515 * 359.46896 * 7 6 5 9 9 C 1.76201 * 99.99921 * 180.56729 * 8 7 6 10 10 H 1.07995 * 119.99940 * 0.02562 * 9 8 7 11 11 C 1.38749 * 119.99818 * 180.02562 * 9 8 7 12 12 N 1.31571 * 120.00126 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99663 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47450 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47097 * 120.00291 * 13 11 9 16 16 H 1.48505 * 109.46803 * 239.99867 * 13 11 9 17 17 N 1.31082 * 109.78547 * 179.97438 * 7 6 5 18 18 C 1.35688 * 109.69031 * 359.52664 * 17 7 6 19 19 C 1.39822 * 133.35176 * 179.97438 * 18 17 7 20 20 C 1.37640 * 119.77219 * 179.74673 * 19 18 17 21 21 C 1.38755 * 120.51920 * 0.27839 * 20 19 18 22 22 C 1.37950 * 120.44922 * 359.97438 * 21 20 19 23 23 C 1.38537 * 126.41864 * 89.99968 * 6 5 4 24 24 C 1.38845 * 119.86077 * 0.27683 * 5 4 3 25 25 C 1.50697 * 120.03478 * 179.71748 * 24 5 4 26 26 C 1.38131 * 119.92796 * 359.45309 * 24 5 4 27 27 H 1.08998 * 109.47595 * 90.00293 * 1 2 3 28 28 H 1.09000 * 109.46697 * 209.99979 * 1 2 3 29 29 H 1.08994 * 109.47094 * 329.99485 * 1 2 3 30 30 H 1.08000 * 119.96679 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03397 * 179.97438 * 4 3 2 32 32 H 0.97000 * 119.99608 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.11630 * 0.03061 * 19 18 17 34 34 H 1.08003 * 119.74185 * 180.25910 * 20 19 18 35 35 H 1.08000 * 119.77299 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.07246 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46914 * 90.00164 * 25 24 5 38 38 H 1.08993 * 109.47381 * 210.00439 * 25 24 5 39 39 H 1.09002 * 109.47003 * 330.00861 * 25 24 5 40 40 H 1.08006 * 119.96622 * 180.29982 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6747 0.0000 -0.0005 7 6 6.4878 0.0133 -1.1025 8 16 5.9296 0.0201 -2.7737 9 6 7.4785 0.0200 -3.6137 10 1 8.3990 0.0158 -3.0490 11 6 7.5155 0.0252 -5.0007 12 7 6.3940 0.0308 -5.6887 13 14 9.1576 0.0243 -5.8912 14 1 10.2602 0.0183 -4.8965 15 1 9.2558 -1.1850 -6.7472 16 1 9.2621 1.2399 -6.7379 17 7 7.7438 0.0092 -0.7273 18 6 7.8161 0.0038 0.6277 19 6 8.8825 -0.0023 1.5319 20 6 8.6311 -0.0017 2.8852 21 6 7.3272 -0.0008 3.3597 22 6 6.2636 0.0000 2.4812 23 6 6.4971 0.0000 1.1143 24 6 3.5782 -1.2016 -0.0058 25 6 4.3293 -2.5080 -0.0123 26 6 2.1969 -1.1982 0.0004 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6554 2.1329 -0.0004 31 1 4.1163 2.1382 -0.0010 32 1 6.4199 0.0348 -6.6583 33 1 9.9000 -0.0030 1.1699 34 1 9.4552 -0.0022 3.5833 35 1 7.1438 -0.0007 4.4240 36 1 5.2511 0.0003 2.8571 37 1 4.5109 -2.8278 1.0138 38 1 3.7388 -3.2641 -0.5294 39 1 5.2818 -2.3769 -0.5258 40 1 1.6552 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603937948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:44 Heat of formation + Delta-G solvation = 86.312034 kcal Electronic energy + Delta-G solvation = -24162.676627 eV Core-core repulsion = 20840.534932 eV Total energy + Delta-G solvation = -3322.141694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57292 -39.32895 -36.72219 -34.37462 -32.70904 -32.57720 -31.37392 -29.61134 -28.80730 -27.22414 -26.15176 -25.69117 -22.88942 -22.50546 -21.72609 -21.14450 -19.91307 -18.21400 -17.48807 -16.40548 -16.13013 -15.66514 -15.11717 -14.94585 -14.50098 -14.20246 -14.07606 -13.90364 -13.54067 -13.47835 -13.18281 -13.12442 -12.94882 -12.57210 -12.08884 -11.77849 -11.58496 -11.52831 -11.43146 -11.20772 -11.18996 -11.06192 -11.04120 -10.93767 -10.18396 -9.95338 -9.37514 -9.33863 -8.89483 -8.76547 -8.43432 -8.28278 -7.74092 -6.69304 -6.48612 -4.21648 1.16946 1.37921 1.40895 1.93360 2.49701 3.14922 3.22404 3.31792 3.32691 3.35663 3.62231 4.00447 4.36995 4.74006 4.78550 4.82088 4.90078 4.95931 5.13975 5.25221 5.26878 5.30145 5.34089 5.49510 5.51721 5.61289 5.72512 5.73825 5.76685 5.83058 5.90723 5.92840 5.97815 6.17839 6.25745 6.35761 6.49873 6.53081 6.58535 6.86146 6.87928 6.88851 7.04478 7.36205 7.56841 7.73307 8.38271 8.56698 9.03976 10.59628 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.005516 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.684582 B = 5074.929609 C = 7435.444858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.090 4.090 5 C 0.122 3.878 6 N -0.452 5.452 7 C 0.274 3.726 8 S 0.146 5.854 9 C -0.534 4.534 10 H 0.108 0.892 11 C 0.075 3.925 12 N -0.876 5.876 13 Si 0.931 3.069 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.506 5.506 18 C 0.074 3.926 19 C -0.084 4.084 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.103 4.103 23 C 0.043 3.957 24 C -0.056 4.056 25 C -0.117 4.117 26 C -0.117 4.117 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.274 0.726 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 -0.991 13.876 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.109 4.109 5 C 0.032 3.968 6 N -0.144 5.144 7 C -0.093 4.093 8 S 0.383 5.617 9 C -0.682 4.682 10 H 0.126 0.874 11 C -0.134 4.134 12 N -0.511 5.511 13 Si 0.756 3.244 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.204 1.204 17 N -0.231 5.231 18 C -0.047 4.047 19 C -0.106 4.106 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.125 4.125 23 C -0.065 4.065 24 C -0.057 4.057 25 C -0.173 4.173 26 C -0.135 4.135 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.501 -0.994 12.543 15.766 hybrid contribution 1.476 0.099 0.375 1.526 sum -8.025 -0.895 12.918 15.234 Atomic orbital electron populations 1.20798 0.90932 1.02677 1.02603 1.19973 0.96194 0.92988 0.98262 1.20848 0.93109 0.97841 1.02047 1.21277 0.94444 0.97243 0.97986 1.17309 0.80556 0.93338 1.05565 1.42478 1.03051 1.64287 1.04578 1.27334 0.87061 0.97963 0.96941 1.83724 1.12277 1.84657 0.81070 1.23351 0.93236 1.58330 0.93306 0.87386 1.25099 0.98600 0.93480 0.96216 1.69939 1.26531 1.46706 1.07961 0.85890 0.81538 0.77924 0.79004 1.18850 1.20356 1.20362 1.71156 1.16043 1.26965 1.08941 1.19313 0.91726 1.02580 0.91125 1.20175 0.97143 1.01892 0.91386 1.20713 0.96505 1.03240 0.94514 1.20629 0.92047 1.04023 0.98406 1.19797 0.99035 1.04617 0.89028 1.18927 0.91013 1.07776 0.88826 1.20058 0.93829 0.94650 0.97211 1.20783 1.00854 0.93435 1.02272 1.20781 0.92493 0.97905 1.02354 0.90821 0.91524 0.91497 0.85424 0.85503 0.91662 0.85967 0.86198 0.86243 0.87085 0.91170 0.90946 0.90906 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.07 -0.88 5.88 -104.59 -0.62 -1.49 16 3 C -0.12 -1.53 9.69 -39.61 -0.38 -1.91 16 4 C -0.09 -1.41 9.97 -39.40 -0.39 -1.80 16 5 C 0.12 2.15 5.31 -83.62 -0.44 1.70 16 6 N -0.45 -9.13 1.93 -58.36 -0.11 -9.25 16 7 C 0.27 6.50 7.41 -88.11 -0.65 5.85 16 8 S 0.15 3.72 21.44 -107.50 -2.30 1.41 16 9 C -0.53 -15.02 9.35 30.92 0.29 -14.73 16 10 H 0.11 3.14 6.85 -52.49 -0.36 2.78 16 11 C 0.08 2.06 5.49 -17.47 -0.10 1.96 16 12 N -0.88 -24.57 13.22 55.49 0.73 -23.84 16 13 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 14 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 N -0.51 -12.48 9.96 -10.80 -0.11 -12.59 16 18 C 0.07 1.59 7.22 -84.68 -0.61 0.98 16 19 C -0.08 -1.49 10.10 -39.21 -0.40 -1.89 16 20 C -0.13 -1.87 10.01 -39.61 -0.40 -2.26 16 21 C -0.13 -1.82 10.03 -39.50 -0.40 -2.22 16 22 C -0.10 -1.66 10.02 -39.53 -0.40 -2.05 16 23 C 0.04 0.84 6.83 -83.79 -0.57 0.27 16 24 C -0.06 -0.88 5.90 -104.44 -0.62 -1.49 16 25 C -0.12 -1.77 9.77 36.00 0.35 -1.41 16 26 C -0.12 -1.50 9.35 -39.61 -0.37 -1.87 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.07 1.35 7.05 -51.93 -0.37 0.98 16 40 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -31.39 358.91 -11.67 -43.06 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.93 Total: 2.51 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -5.34 Total: -22.98 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.51 Total: -45.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.30 Total: 1.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.39 -11.67 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603937948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.367 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds