Wall clock time and date at job start Tue Mar 31 2020 13:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38302 * 119.92974 * 2 1 4 4 C 1.38088 * 120.06770 * 180.02562 * 3 2 1 5 5 C 1.38882 * 119.93267 * 359.97438 * 4 3 2 6 6 N 1.40081 * 120.07214 * 180.02562 * 5 4 3 7 7 C 1.36961 * 126.42135 * 270.69241 * 6 5 4 8 8 S 1.76198 * 125.10515 * 359.46896 * 7 6 5 9 9 C 1.76201 * 99.99921 * 180.56729 * 8 7 6 10 10 H 1.07995 * 119.99940 * 0.02562 * 9 8 7 11 11 C 1.38749 * 119.99818 * 180.02562 * 9 8 7 12 12 N 1.31571 * 120.00126 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99663 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47450 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47097 * 120.00291 * 13 11 9 16 16 H 1.48505 * 109.46803 * 239.99867 * 13 11 9 17 17 N 1.31082 * 109.78547 * 179.97438 * 7 6 5 18 18 C 1.35688 * 109.69031 * 359.52664 * 17 7 6 19 19 C 1.39822 * 133.35176 * 179.97438 * 18 17 7 20 20 C 1.37640 * 119.77219 * 179.74673 * 19 18 17 21 21 C 1.38755 * 120.51920 * 0.27839 * 20 19 18 22 22 C 1.37950 * 120.44922 * 359.97438 * 21 20 19 23 23 C 1.38537 * 126.41864 * 89.99968 * 6 5 4 24 24 C 1.38845 * 119.86077 * 0.27683 * 5 4 3 25 25 C 1.50697 * 120.03478 * 179.71748 * 24 5 4 26 26 C 1.38131 * 119.92796 * 359.45309 * 24 5 4 27 27 H 1.08998 * 109.47595 * 90.00293 * 1 2 3 28 28 H 1.09000 * 109.46697 * 209.99979 * 1 2 3 29 29 H 1.08994 * 109.47094 * 329.99485 * 1 2 3 30 30 H 1.08000 * 119.96679 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03397 * 179.97438 * 4 3 2 32 32 H 0.97000 * 119.99608 * 179.97438 * 12 11 9 33 33 H 1.08002 * 120.11630 * 0.03061 * 19 18 17 34 34 H 1.08003 * 119.74185 * 180.25910 * 20 19 18 35 35 H 1.08000 * 119.77299 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.07246 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46914 * 90.00164 * 25 24 5 38 38 H 1.08993 * 109.47381 * 210.00439 * 25 24 5 39 39 H 1.09002 * 109.47003 * 330.00861 * 25 24 5 40 40 H 1.08006 * 119.96622 * 180.29982 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6747 0.0000 -0.0005 7 6 6.4878 0.0133 -1.1025 8 16 5.9296 0.0201 -2.7737 9 6 7.4785 0.0200 -3.6137 10 1 8.3990 0.0158 -3.0490 11 6 7.5155 0.0252 -5.0007 12 7 6.3940 0.0308 -5.6887 13 14 9.1576 0.0243 -5.8912 14 1 10.2602 0.0183 -4.8965 15 1 9.2558 -1.1850 -6.7472 16 1 9.2621 1.2399 -6.7379 17 7 7.7438 0.0092 -0.7273 18 6 7.8161 0.0038 0.6277 19 6 8.8825 -0.0023 1.5319 20 6 8.6311 -0.0017 2.8852 21 6 7.3272 -0.0008 3.3597 22 6 6.2636 0.0000 2.4812 23 6 6.4971 0.0000 1.1143 24 6 3.5782 -1.2016 -0.0058 25 6 4.3293 -2.5080 -0.0123 26 6 2.1969 -1.1982 0.0004 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6554 2.1329 -0.0004 31 1 4.1163 2.1382 -0.0010 32 1 6.4199 0.0348 -6.6583 33 1 9.9000 -0.0030 1.1699 34 1 9.4552 -0.0022 3.5833 35 1 7.1438 -0.0007 4.4240 36 1 5.2511 0.0003 2.8571 37 1 4.5109 -2.8278 1.0138 38 1 3.7388 -3.2641 -0.5294 39 1 5.2818 -2.3769 -0.5258 40 1 1.6552 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603937948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:43 Heat of formation + Delta-G solvation = 71.450070 kcal Electronic energy + Delta-G solvation = -24163.321090 eV Core-core repulsion = 20840.534932 eV Total energy + Delta-G solvation = -3322.786157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.05813 -40.46501 -38.04957 -35.64817 -34.76787 -33.79939 -32.52648 -30.88743 -30.26327 -28.27703 -27.80879 -27.23627 -24.39473 -23.66019 -23.02666 -22.49644 -21.17005 -20.01098 -18.88327 -17.93149 -17.36858 -17.22772 -16.98993 -16.18067 -15.66837 -15.60050 -15.50727 -15.09576 -14.81271 -14.75622 -14.64248 -14.24608 -14.08027 -13.51897 -13.37710 -13.08126 -13.03630 -13.01814 -12.90111 -12.75349 -12.61088 -12.52789 -12.20790 -12.19549 -12.03676 -11.41239 -11.29960 -11.05082 -10.80832 -9.92138 -9.85869 -9.56907 -9.13475 -8.54521 -8.53500 -6.32605 -0.01810 0.04068 0.28873 0.59782 0.75225 1.33566 1.34538 1.51336 1.74525 1.85343 2.12537 2.53803 2.85537 2.96348 3.02252 3.52243 3.71828 3.74799 3.90456 4.04154 4.13494 4.25000 4.35715 4.38166 4.47657 4.52834 4.53443 4.60668 4.61258 4.70314 4.88401 4.90811 4.93169 5.08930 5.15734 5.23317 5.28609 5.42760 5.43712 5.51763 5.54632 5.58249 5.67143 5.83843 6.02866 6.21322 6.31343 6.91781 6.94794 8.55565 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.005516 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.684582 B = 5074.929609 C = 7435.444858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.065 4.065 3 C -0.116 4.116 4 C -0.108 4.108 5 C 0.083 3.917 6 N -0.438 5.438 7 C 0.257 3.743 8 S 0.106 5.894 9 C -0.557 4.557 10 H 0.086 0.914 11 C 0.031 3.969 12 N -0.904 5.904 13 Si 0.997 3.003 14 H -0.272 1.272 15 H -0.263 1.263 16 H -0.264 1.264 17 N -0.544 5.544 18 C 0.022 3.978 19 C -0.099 4.099 20 C -0.113 4.113 21 C -0.104 4.104 22 C -0.110 4.110 23 C 0.031 3.969 24 C -0.072 4.072 25 C -0.110 4.110 26 C -0.114 4.114 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.114 0.886 32 H 0.280 0.720 33 H 0.125 0.875 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.028 0.972 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 -1.234 16.848 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.006 4.006 6 N -0.128 5.128 7 C -0.113 4.113 8 S 0.342 5.658 9 C -0.705 4.705 10 H 0.104 0.896 11 C -0.175 4.175 12 N -0.540 5.540 13 Si 0.818 3.182 14 H -0.197 1.197 15 H -0.188 1.188 16 H -0.189 1.189 17 N -0.269 5.269 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.077 4.077 24 C -0.073 4.073 25 C -0.167 4.167 26 C -0.132 4.132 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.174 0.826 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.044 -1.236 15.575 19.133 hybrid contribution 1.911 0.176 -0.185 1.928 sum -9.133 -1.060 15.390 17.927 Atomic orbital electron populations 1.20891 0.87779 1.04525 1.03574 1.20444 0.98317 0.92050 0.95674 1.21202 0.91832 0.99741 1.00659 1.21333 0.95891 0.96154 0.99324 1.17691 0.79324 0.94928 1.08639 1.42484 1.04144 1.62502 1.03692 1.26759 0.87762 1.00062 0.96706 1.83339 1.11991 1.87378 0.83102 1.23390 0.93424 1.59531 0.94158 0.89564 1.25978 1.02264 0.92742 0.96522 1.70008 1.28315 1.47202 1.08486 0.84936 0.76733 0.78875 0.77647 1.19667 1.18812 1.18862 1.70976 1.17227 1.27101 1.11602 1.19817 0.94028 1.05712 0.90282 1.20516 0.96567 1.02283 0.92625 1.21234 0.98344 1.00343 0.93433 1.21266 0.90958 0.99743 1.00429 1.20192 1.00991 1.04453 0.87537 1.19386 0.90247 1.08025 0.90064 1.20213 0.95154 0.93826 0.98110 1.20718 0.99056 0.94268 1.02644 1.21149 0.91275 0.99785 1.01007 0.90057 0.89690 0.89773 0.82585 0.86782 0.91017 0.85714 0.81776 0.81347 0.85135 0.89987 0.88833 0.95284 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.06 -1.37 5.88 -19.84 -0.12 -1.49 16 3 C -0.12 -2.79 9.69 22.25 0.22 -2.58 16 4 C -0.11 -3.46 9.97 22.39 0.22 -3.24 16 5 C 0.08 3.04 5.31 38.12 0.20 3.24 16 6 N -0.44 -18.80 1.93 -338.56 -0.65 -19.45 16 7 C 0.26 13.21 7.41 179.47 1.33 14.54 16 8 S 0.11 5.89 21.44 -56.49 -1.21 4.68 16 9 C -0.56 -33.59 9.35 67.94 0.64 -32.95 16 10 H 0.09 5.43 6.85 -2.91 -0.02 5.41 16 11 C 0.03 1.77 5.49 84.85 0.47 2.24 16 12 N -0.90 -52.65 13.22 21.64 0.29 -52.36 16 13 Si 1.00 45.21 29.55 68.60 2.03 47.24 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 N -0.54 -29.01 9.96 -188.09 -1.87 -30.89 16 18 C 0.02 0.99 7.22 39.50 0.29 1.28 16 19 C -0.10 -3.49 10.10 22.51 0.23 -3.27 16 20 C -0.11 -2.90 10.01 22.25 0.22 -2.67 16 21 C -0.10 -2.47 10.03 22.33 0.22 -2.25 16 22 C -0.11 -3.35 10.02 22.30 0.22 -3.13 16 23 C 0.03 1.26 6.83 38.76 0.26 1.53 16 24 C -0.07 -2.25 5.90 -19.75 -0.12 -2.37 16 25 C -0.11 -3.42 9.77 71.23 0.70 -2.73 16 26 C -0.11 -2.70 9.35 22.25 0.21 -2.50 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 31 H 0.11 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.09 2.40 8.09 -2.39 -0.02 2.38 16 39 H 0.03 1.14 7.05 -2.39 -0.02 1.12 16 40 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -76.29 358.91 5.53 -70.76 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.05 Total: 17.06 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 5.90 Total: -37.05 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -2.24 Total: -102.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -1.21 Total: 4.68 kcal Total: -76.29 5.53 -70.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603937948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.213 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds