Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99883 * 2 1 4 4 N 1.46494 * 109.47139 * 124.99702 * 3 2 1 5 5 C 1.35064 * 125.57094 * 269.95677 * 4 3 2 6 6 O 1.21300 * 127.27853 * 0.02562 * 5 4 3 7 7 C 1.49972 * 105.43359 * 179.83685 * 5 4 3 8 8 O 1.21304 * 127.28588 * 180.25533 * 7 5 4 9 9 N 1.35061 * 105.43341 * 0.33217 * 7 5 4 10 10 C 1.46497 * 125.56544 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.47128 * 269.68864 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47188 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99984 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47173 * 90.00328 * 21 19 17 23 23 H 1.48499 * 109.47352 * 210.00296 * 21 19 17 24 24 H 1.48502 * 109.47259 * 330.00050 * 21 19 17 25 25 C 1.34274 * 108.86521 * 359.66363 * 9 7 5 26 26 O 1.21483 * 124.29817 * 180.24852 * 25 9 7 27 27 H 1.07998 * 120.00097 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99925 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00558 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47106 * 4.99625 * 3 2 1 31 31 H 1.08997 * 109.46761 * 244.99800 * 3 2 1 32 32 H 1.09004 * 109.47268 * 149.69004 * 10 9 7 33 33 H 1.08997 * 109.47471 * 29.69411 * 10 9 7 34 34 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 35 35 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 36 36 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 37 37 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 38 38 H 1.09004 * 109.47100 * 299.99832 * 16 15 14 39 39 H 1.08999 * 109.47046 * 60.00020 * 16 15 14 40 40 H 0.96998 * 119.99842 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7134 1.7971 2.3681 6 8 1.6641 2.2657 2.7565 7 6 3.9723 1.6074 3.1607 8 8 4.1565 1.8890 4.3261 9 7 4.8584 1.0582 2.3019 10 6 6.2395 0.6895 2.6225 11 6 7.1490 1.8584 2.3440 12 8 6.6905 2.8934 1.9215 13 8 8.4685 1.7498 2.5652 14 6 9.2838 2.9154 2.2741 15 6 10.7488 2.6040 2.5867 16 6 11.6079 3.8324 2.2806 17 6 13.0510 3.5254 2.5879 18 1 13.3277 2.5517 2.9643 19 6 14.0181 4.4877 2.3884 20 7 13.6812 5.6737 1.9305 21 14 15.8067 4.1075 2.7700 22 1 16.4636 3.5513 1.5599 23 1 16.5010 5.3541 3.1813 24 1 15.8775 3.1148 3.8722 25 6 4.2645 0.8990 1.1082 26 8 4.8079 0.4233 0.1313 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 6.5407 -0.1595 2.0088 33 1 6.3081 0.4187 3.6761 34 1 9.1840 3.1746 1.2202 35 1 8.9520 3.7532 2.8873 36 1 10.8484 2.3450 3.6408 37 1 11.0809 1.7660 1.9738 38 1 11.5085 4.0918 1.2265 39 1 11.2757 4.6701 2.8938 40 1 14.3615 6.3507 1.7906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726043716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = -122.406646 kcal Electronic energy + Delta-G solvation = -26487.641296 eV Core-core repulsion = 22270.553995 eV Total energy + Delta-G solvation = -4217.087301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.89467 -40.52491 -39.73852 -39.31176 -37.01331 -36.89026 -36.25445 -34.24090 -34.04655 -31.82339 -30.46692 -27.69747 -26.75287 -26.08193 -23.66313 -22.66911 -22.51877 -21.08831 -20.58438 -20.38995 -18.54503 -18.45799 -17.62078 -17.47319 -17.17256 -16.76948 -16.56106 -16.34582 -15.88391 -15.74146 -15.37558 -14.98846 -14.78149 -14.49282 -14.44242 -14.07086 -13.31980 -13.22224 -13.09009 -12.87468 -12.25271 -12.15832 -12.11712 -11.95888 -11.54709 -11.25562 -11.01108 -10.81501 -10.71431 -10.68389 -10.58109 -10.51426 -10.35201 -10.11618 -9.79495 -9.55154 -9.20176 -8.41508 -6.06211 -4.09524 -0.19295 0.98857 1.31494 1.84367 1.96465 2.00250 2.04485 2.70412 3.29463 3.34807 3.35817 3.39080 3.96051 4.18448 4.33500 4.36710 4.43707 4.61268 4.63147 4.66771 4.73412 4.96652 5.07451 5.28155 5.29810 5.48377 5.50167 5.91407 5.92817 5.97941 6.03990 6.13180 6.30247 6.47010 6.63736 6.71150 6.91630 6.98070 7.56008 7.60966 7.66491 7.91616 8.32076 8.96628 9.54983 11.05173 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.002006 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.804957 B =13957.154244 C =14231.535048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.189 4.189 3 C 0.149 3.851 4 N -0.568 5.568 5 C 0.515 3.485 6 O -0.407 6.407 7 C 0.513 3.487 8 O -0.401 6.401 9 N -0.564 5.564 10 C 0.130 3.870 11 C 0.444 3.556 12 O -0.502 6.502 13 O -0.349 6.349 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.716 3.284 26 O -0.479 6.479 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.910 -13.826 -2.499 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C 0.030 3.970 4 N -0.317 5.317 5 C 0.296 3.704 6 O -0.270 6.270 7 C 0.293 3.707 8 O -0.264 6.264 9 N -0.313 5.313 10 C 0.008 3.992 11 C 0.284 3.716 12 O -0.390 6.390 13 O -0.265 6.265 14 C -0.004 4.004 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.419 3.581 26 O -0.347 6.347 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.092 -13.141 -2.354 30.203 hybrid contribution 1.100 0.100 0.014 1.105 sum -25.992 -13.041 -2.341 29.174 Atomic orbital electron populations 1.24026 0.95544 1.02818 0.96691 1.23129 0.96383 0.98187 1.03109 1.20945 0.91103 0.97670 0.87304 1.46743 1.13030 1.58123 1.13791 1.20755 0.89021 0.78116 0.82533 1.90853 1.25948 1.36685 1.73563 1.20897 0.85630 0.77354 0.86809 1.90884 1.79699 1.42506 1.13261 1.46236 1.13481 1.59317 1.12312 1.21140 0.75338 0.95774 1.06984 1.23513 0.83504 0.89195 0.75340 1.90706 1.76720 1.30350 1.41247 1.86471 1.17687 1.44534 1.77797 1.23625 0.90883 0.84465 1.01384 1.21790 0.88925 1.02194 1.01756 1.19060 0.93665 0.91241 0.97381 1.21158 0.91802 0.99058 1.44031 0.92371 1.25038 0.99287 0.95025 0.95153 1.69966 1.33740 1.04156 1.45441 0.86530 0.84674 0.77754 0.78670 1.20605 1.21188 1.19801 1.15810 0.80918 0.78185 0.83167 1.91057 1.66518 1.44090 1.32996 0.87840 0.87519 0.86366 0.87494 0.86819 0.83443 0.83561 0.91221 0.91244 0.91962 0.91953 0.96206 0.96195 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 14.32 29.02 0.42 -0.21 16 2 C -0.19 -0.96 9.85 -36.02 -0.35 -1.31 16 3 C 0.15 0.85 6.30 -5.19 -0.03 0.81 16 4 N -0.57 -4.66 2.64 -122.52 -0.32 -4.99 16 5 C 0.52 4.93 8.31 -11.21 -0.09 4.84 16 6 O -0.41 -4.57 17.88 5.54 0.10 -4.47 16 7 C 0.51 5.34 8.31 -11.21 -0.09 5.24 16 8 O -0.40 -5.05 17.88 5.54 0.10 -4.95 16 9 N -0.56 -5.41 2.15 -122.51 -0.26 -5.67 16 10 C 0.13 1.10 6.45 -5.20 -0.03 1.07 16 11 C 0.44 6.03 8.03 36.01 0.29 6.32 16 12 O -0.50 -8.45 16.18 -18.75 -0.30 -8.76 16 13 O -0.35 -5.26 10.22 -39.27 -0.40 -5.66 16 14 C 0.07 1.22 5.47 37.16 0.20 1.42 16 15 C -0.11 -2.18 5.53 -26.73 -0.15 -2.33 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.72 6.95 8.32 -87.81 -0.73 6.21 16 26 O -0.48 -5.55 17.27 5.38 0.09 -5.46 16 27 H 0.10 0.35 7.84 -52.49 -0.41 -0.06 16 28 H 0.11 0.33 8.06 -52.49 -0.42 -0.09 16 29 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.11 0.48 7.75 -51.93 -0.40 0.08 16 31 H 0.11 0.58 7.98 -51.93 -0.41 0.16 16 32 H 0.15 0.86 7.98 -51.93 -0.41 0.45 16 33 H 0.15 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -34.69 369.42 -5.83 -40.52 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -4.99 Total: -5.80 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -1.13 Total: 9.19 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.15 Total: -36.56 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.41 Total: -29.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.69 -5.83 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726043716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.889 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds