Wall clock time and date at job start Tue Mar 31 2020 14:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46842 * 2 1 4 4 C 1.53004 * 109.46914 * 240.00377 * 2 1 3 5 5 N 1.46492 * 109.47349 * 120.00156 * 2 1 3 6 6 C 1.34774 * 120.00135 * 57.22241 * 5 2 1 7 7 S 1.71200 * 119.99967 * 4.81972 * 6 5 2 8 8 N 1.34777 * 120.00123 * 184.81809 * 6 5 2 9 9 C 1.40143 * 119.99865 * 183.58942 * 8 6 5 10 10 C 1.38638 * 120.10204 * 37.68080 * 9 8 6 11 11 C 1.38255 * 120.01008 * 180.02562 * 10 9 8 12 12 C 1.38294 * 120.20539 * 359.97438 * 11 10 9 13 13 C 1.38213 * 120.20097 * 359.97438 * 12 11 10 14 14 C 1.38767 * 119.98680 * 0.02562 * 13 12 11 15 15 S 1.76196 * 120.10134 * 180.02562 * 14 13 12 16 16 C 1.81393 * 103.00205 * 359.97056 * 15 14 13 17 17 C 1.50699 * 109.47376 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00069 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00049 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00165 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00317 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46871 * 89.99999 * 21 19 17 23 23 H 1.48495 * 109.47579 * 210.00187 * 21 19 17 24 24 H 1.48504 * 109.47041 * 330.00557 * 21 19 17 25 25 H 1.09000 * 109.47081 * 304.63187 * 1 2 3 26 26 H 1.08998 * 109.47338 * 64.63373 * 1 2 3 27 27 H 1.09007 * 109.47284 * 184.63245 * 1 2 3 28 28 H 1.09005 * 109.46891 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46931 * 299.99855 * 3 2 1 30 30 H 1.09001 * 109.46962 * 60.00217 * 3 2 1 31 31 H 1.08996 * 109.46838 * 306.87065 * 4 2 1 32 32 H 1.08996 * 109.47104 * 66.87683 * 4 2 1 33 33 H 1.08997 * 109.46964 * 186.87333 * 4 2 1 34 34 H 0.97004 * 119.99897 * 237.22659 * 5 2 1 35 35 H 0.96997 * 120.00214 * 3.58023 * 8 6 5 36 36 H 1.08006 * 119.99914 * 359.97438 * 10 9 8 37 37 H 1.08005 * 119.90046 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.90011 * 179.72732 * 12 11 10 39 39 H 1.08001 * 120.00358 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.47240 * 300.00397 * 16 15 14 41 41 H 1.08996 * 109.47445 * 60.00280 * 16 15 14 42 42 H 0.96993 * 120.00277 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 1.6473 -1.9634 1.4380 7 16 0.7067 -2.8142 0.2880 8 7 2.0166 -2.5666 2.5853 9 6 1.6954 -3.9131 2.8040 10 6 1.7432 -4.8185 1.7553 11 6 1.4254 -6.1463 1.9730 12 6 1.0596 -6.5761 3.2356 13 6 1.0101 -5.6810 4.2875 14 6 1.3274 -4.3465 4.0781 15 16 1.2659 -3.2029 5.4172 16 6 0.7478 -4.2376 6.8140 17 6 0.6465 -3.3905 8.0563 18 1 0.8718 -2.3353 8.0102 19 6 0.2673 -3.9629 9.2520 20 7 0.1794 -3.2238 10.3362 21 14 -0.1215 -5.7882 9.3320 22 1 1.1167 -6.5447 9.6480 23 1 -1.1345 -6.0327 10.3899 24 1 -0.6558 -6.2384 8.0216 25 1 -0.3633 0.5840 0.8456 26 1 -0.3634 0.4402 -0.9286 27 1 -0.3634 -1.0244 0.0830 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.5797 -1.7072 -1.3129 32 1 1.7805 -0.1412 -2.1350 33 1 3.1229 -0.8289 -1.1900 34 1 2.6088 -0.2317 1.8140 35 1 2.5049 -2.0688 3.2596 36 1 2.0280 -4.4865 0.7677 37 1 1.4636 -6.8503 1.1548 38 1 0.8081 -7.6136 3.3992 39 1 0.7236 -6.0201 5.2721 40 1 -0.2239 -4.6812 6.5969 41 1 1.4810 -5.0285 6.9720 42 1 -0.0877 -3.6263 11.1773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730952694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:36 Heat of formation + Delta-G solvation = 48.013981 kcal Electronic energy + Delta-G solvation = -22479.334315 eV Core-core repulsion = 19290.975843 eV Total energy + Delta-G solvation = -3188.358471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21804 -38.92440 -36.47897 -33.25205 -32.61702 -31.00065 -29.49292 -29.10928 -27.89455 -27.33404 -24.64099 -23.09652 -22.61452 -21.77282 -20.57554 -18.60761 -18.16612 -17.12263 -16.73524 -16.11021 -15.55494 -15.28379 -14.84371 -14.58521 -14.34647 -14.01023 -13.83764 -13.64291 -13.39467 -13.24517 -12.72516 -12.62889 -12.58844 -12.29806 -12.12194 -11.88513 -11.81075 -11.41778 -11.34557 -11.21075 -11.02540 -10.94517 -10.55675 -10.33659 -9.99248 -9.82743 -9.37341 -9.35401 -8.84085 -8.44020 -7.62575 -6.84151 -6.70422 -6.32999 -4.37784 0.92174 1.55913 1.68982 1.90584 2.12952 2.45007 3.11670 3.17932 3.20570 3.26311 3.39797 3.95480 4.18374 4.45219 4.64360 4.79708 4.98310 5.10592 5.19938 5.22513 5.30851 5.36745 5.45544 5.58816 5.63288 5.65630 5.73246 5.78052 5.87843 6.00696 6.12909 6.27519 6.36465 6.42992 6.46776 6.47573 6.48992 6.63243 6.71994 6.81347 7.12907 7.21947 7.23800 8.11654 8.65628 9.21478 10.78576 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.003434 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.700969 B = 8152.138464 C = 9423.488343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.185 4.185 5 N -0.676 5.676 6 C 0.563 3.437 7 S -0.613 6.613 8 N -0.615 5.615 9 C 0.124 3.876 10 C -0.059 4.059 11 C -0.133 4.133 12 C -0.095 4.095 13 C -0.135 4.135 14 C -0.079 4.079 15 S -0.134 6.134 16 C 0.035 3.965 17 C -0.523 4.523 18 H 0.084 0.916 19 C 0.084 3.916 20 N -0.886 5.886 21 Si 0.876 3.124 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.264 1.264 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.398 0.602 35 H 0.410 0.590 36 H 0.152 0.848 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 3.037 -20.297 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.095 3.905 3 C -0.215 4.215 4 C -0.244 4.244 5 N -0.305 5.305 6 C 0.203 3.797 7 S -0.480 6.480 8 N -0.238 5.238 9 C 0.024 3.976 10 C -0.083 4.083 11 C -0.155 4.155 12 C -0.115 4.115 13 C -0.160 4.160 14 C -0.195 4.195 15 S 0.112 5.888 16 C -0.113 4.113 17 C -0.562 4.562 18 H 0.102 0.898 19 C -0.121 4.121 20 N -0.523 5.523 21 Si 0.702 3.298 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.235 0.765 35 H 0.249 0.751 36 H 0.170 0.830 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.321 3.791 -20.812 21.813 hybrid contribution 0.466 -1.119 1.623 2.025 sum 5.787 2.672 -19.189 20.220 Atomic orbital electron populations 1.22766 0.92917 1.07754 1.01599 1.20593 0.95735 0.90961 0.83226 1.22142 1.01501 0.94300 1.03527 1.22738 1.00887 1.05793 0.94988 1.45254 1.48178 1.10370 1.26702 1.22223 0.84601 0.85010 0.87871 1.92939 1.48303 1.65532 1.41244 1.42260 1.53836 1.11310 1.16391 1.16809 1.06423 0.81031 0.93342 1.21437 0.96563 0.91641 0.98655 1.20879 1.02738 0.95115 0.96817 1.21098 0.98502 0.99213 0.92718 1.21063 1.03189 0.91599 1.00174 1.21924 1.02367 0.98454 0.96756 1.85158 1.84315 1.17689 1.01595 1.21724 0.99031 0.97003 0.93504 1.20371 1.48968 0.96992 0.89869 0.89815 1.24822 0.94101 0.98255 0.94967 1.69846 1.46245 1.36209 0.99990 0.86830 0.79030 0.85237 0.78686 1.19646 1.20548 1.18825 0.93320 0.91558 0.86448 0.91999 0.90103 0.91840 0.86440 0.91964 0.93372 0.76533 0.75138 0.83027 0.85810 0.86043 0.85321 0.93673 0.94216 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 8.35 37.16 0.31 -1.70 16 2 C 0.18 1.59 1.06 -131.82 -0.14 1.45 16 3 C -0.16 -0.98 8.59 37.16 0.32 -0.66 16 4 C -0.18 -1.72 8.30 37.16 0.31 -1.41 16 5 N -0.68 -6.38 5.11 -49.30 -0.25 -6.63 16 6 C 0.56 7.12 7.30 -86.92 -0.63 6.49 16 7 S -0.61 -9.26 18.89 -107.50 -2.03 -11.29 16 8 N -0.61 -8.11 4.98 -11.24 -0.06 -8.17 16 9 C 0.12 1.93 6.06 -83.43 -0.51 1.42 16 10 C -0.06 -0.86 7.85 -39.43 -0.31 -1.17 16 11 C -0.13 -1.78 10.04 -39.55 -0.40 -2.18 16 12 C -0.09 -1.33 10.04 -39.57 -0.40 -1.73 16 13 C -0.14 -2.26 9.36 -39.40 -0.37 -2.63 16 14 C -0.08 -1.38 6.12 -38.91 -0.24 -1.62 16 15 S -0.13 -2.64 20.78 -107.50 -2.23 -4.88 16 16 C 0.04 0.80 3.16 36.01 0.11 0.92 16 17 C -0.52 -14.21 9.68 -34.44 -0.33 -14.54 16 18 H 0.08 2.48 7.96 -52.49 -0.42 2.06 16 19 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 20 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 21 Si 0.88 20.16 27.47 -169.99 -4.67 15.49 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.12 1.58 4.55 -29.30 -0.13 1.45 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.12 1.39 4.80 -31.61 -0.15 1.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 2.80 8.50 -40.82 -0.35 2.46 16 35 H 0.41 4.80 8.10 -40.82 -0.33 4.47 16 36 H 0.15 2.18 5.69 -35.79 -0.20 1.98 16 37 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.13 2.22 5.88 -52.49 -0.31 1.91 16 40 H 0.05 1.04 6.81 -51.92 -0.35 0.68 16 41 H 0.04 0.88 7.18 -51.93 -0.37 0.51 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -30.52 354.18 -11.09 -41.61 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.59 Total: 8.76 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.37 Total: -15.14 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.47 Total: -39.89 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Atomic # 16 Polarization: -11.90 SS G_CDS: -4.26 Total: -16.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.52 -11.09 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730952694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.623 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds