Wall clock time and date at job start Tue Mar 31 2020 14:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46842 * 2 1 4 4 C 1.53004 * 109.46914 * 240.00377 * 2 1 3 5 5 N 1.46492 * 109.47349 * 120.00156 * 2 1 3 6 6 C 1.34774 * 120.00135 * 57.22241 * 5 2 1 7 7 S 1.71200 * 119.99967 * 4.81972 * 6 5 2 8 8 N 1.34777 * 120.00123 * 184.81809 * 6 5 2 9 9 C 1.40143 * 119.99865 * 183.58942 * 8 6 5 10 10 C 1.38638 * 120.10204 * 37.68080 * 9 8 6 11 11 C 1.38255 * 120.01008 * 180.02562 * 10 9 8 12 12 C 1.38294 * 120.20539 * 359.97438 * 11 10 9 13 13 C 1.38213 * 120.20097 * 359.97438 * 12 11 10 14 14 C 1.38767 * 119.98680 * 0.02562 * 13 12 11 15 15 S 1.76196 * 120.10134 * 180.02562 * 14 13 12 16 16 C 1.81393 * 103.00205 * 359.97056 * 15 14 13 17 17 C 1.50699 * 109.47376 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00069 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00049 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00165 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00317 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46871 * 89.99999 * 21 19 17 23 23 H 1.48495 * 109.47579 * 210.00187 * 21 19 17 24 24 H 1.48504 * 109.47041 * 330.00557 * 21 19 17 25 25 H 1.09000 * 109.47081 * 304.63187 * 1 2 3 26 26 H 1.08998 * 109.47338 * 64.63373 * 1 2 3 27 27 H 1.09007 * 109.47284 * 184.63245 * 1 2 3 28 28 H 1.09005 * 109.46891 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46931 * 299.99855 * 3 2 1 30 30 H 1.09001 * 109.46962 * 60.00217 * 3 2 1 31 31 H 1.08996 * 109.46838 * 306.87065 * 4 2 1 32 32 H 1.08996 * 109.47104 * 66.87683 * 4 2 1 33 33 H 1.08997 * 109.46964 * 186.87333 * 4 2 1 34 34 H 0.97004 * 119.99897 * 237.22659 * 5 2 1 35 35 H 0.96997 * 120.00214 * 3.58023 * 8 6 5 36 36 H 1.08006 * 119.99914 * 359.97438 * 10 9 8 37 37 H 1.08005 * 119.90046 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.90011 * 179.72732 * 12 11 10 39 39 H 1.08001 * 120.00358 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.47240 * 300.00397 * 16 15 14 41 41 H 1.08996 * 109.47445 * 60.00280 * 16 15 14 42 42 H 0.96993 * 120.00277 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 1.6473 -1.9634 1.4380 7 16 0.7067 -2.8142 0.2880 8 7 2.0166 -2.5666 2.5853 9 6 1.6954 -3.9131 2.8040 10 6 1.7432 -4.8185 1.7553 11 6 1.4254 -6.1463 1.9730 12 6 1.0596 -6.5761 3.2356 13 6 1.0101 -5.6810 4.2875 14 6 1.3274 -4.3465 4.0781 15 16 1.2659 -3.2029 5.4172 16 6 0.7478 -4.2376 6.8140 17 6 0.6465 -3.3905 8.0563 18 1 0.8718 -2.3353 8.0102 19 6 0.2673 -3.9629 9.2520 20 7 0.1794 -3.2238 10.3362 21 14 -0.1215 -5.7882 9.3320 22 1 1.1167 -6.5447 9.6480 23 1 -1.1345 -6.0327 10.3899 24 1 -0.6558 -6.2384 8.0216 25 1 -0.3633 0.5840 0.8456 26 1 -0.3634 0.4402 -0.9286 27 1 -0.3634 -1.0244 0.0830 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.5797 -1.7072 -1.3129 32 1 1.7805 -0.1412 -2.1350 33 1 3.1229 -0.8289 -1.1900 34 1 2.6088 -0.2317 1.8140 35 1 2.5049 -2.0688 3.2596 36 1 2.0280 -4.4865 0.7677 37 1 1.4636 -6.8503 1.1548 38 1 0.8081 -7.6136 3.3992 39 1 0.7236 -6.0201 5.2721 40 1 -0.2239 -4.6812 6.5969 41 1 1.4810 -5.0285 6.9720 42 1 -0.0877 -3.6263 11.1773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730952694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:35 Heat of formation + Delta-G solvation = 30.896783 kcal Electronic energy + Delta-G solvation = -22480.076572 eV Core-core repulsion = 19290.975843 eV Total energy + Delta-G solvation = -3189.100729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25200 -39.90169 -37.48622 -35.29967 -33.53090 -32.31539 -31.33734 -30.22216 -28.53559 -28.12135 -25.73033 -24.80942 -23.88539 -22.96441 -21.46534 -19.67239 -19.43432 -18.85063 -18.03377 -17.12887 -16.79424 -16.29722 -16.27275 -15.88851 -15.46258 -15.10192 -14.99958 -14.90874 -14.71808 -14.65090 -14.37183 -13.87655 -13.23581 -13.12792 -13.04603 -12.94959 -12.74603 -12.65496 -12.54272 -12.40363 -12.21911 -12.17545 -12.00902 -11.85959 -11.72337 -11.07655 -10.95490 -10.89685 -10.59653 -9.54214 -8.73719 -8.43429 -8.29218 -7.83747 -6.54597 -0.15631 0.36877 0.56708 0.66415 0.86168 1.31886 1.33488 1.43215 1.44184 1.68660 2.24823 2.41642 2.80024 2.90013 3.78065 3.89692 3.96848 4.10051 4.17445 4.28207 4.46417 4.50197 4.51668 4.62264 4.65346 4.68724 4.77396 4.87677 4.92716 5.00015 5.08353 5.12907 5.17900 5.22570 5.26492 5.40789 5.47621 5.61323 5.62935 5.72817 5.81121 5.98003 6.07933 6.26468 6.48832 7.09027 8.71810 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.003434 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.700969 B = 8152.138464 C = 9423.488343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.176 3.824 3 C -0.151 4.151 4 C -0.180 4.180 5 N -0.657 5.657 6 C 0.570 3.430 7 S -0.659 6.659 8 N -0.616 5.616 9 C 0.125 3.875 10 C -0.064 4.064 11 C -0.121 4.121 12 C -0.091 4.091 13 C -0.150 4.150 14 C -0.100 4.100 15 S -0.145 6.145 16 C 0.038 3.962 17 C -0.534 4.534 18 H 0.042 0.958 19 C 0.026 3.974 20 N -0.934 5.934 21 Si 0.945 3.055 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.245 1.245 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.413 0.587 35 H 0.416 0.584 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 1.875 -22.377 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.092 3.908 3 C -0.208 4.208 4 C -0.239 4.239 5 N -0.286 5.286 6 C 0.208 3.792 7 S -0.526 6.526 8 N -0.240 5.240 9 C 0.025 3.975 10 C -0.088 4.088 11 C -0.143 4.143 12 C -0.111 4.111 13 C -0.175 4.175 14 C -0.216 4.216 15 S 0.100 5.900 16 C -0.110 4.110 17 C -0.573 4.573 18 H 0.060 0.940 19 C -0.175 4.175 20 N -0.573 5.573 21 Si 0.767 3.233 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.168 1.168 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.252 0.748 35 H 0.256 0.744 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.976 2.667 -22.929 23.844 hybrid contribution 0.307 -0.649 2.112 2.230 sum 6.282 2.019 -20.817 21.838 Atomic orbital electron populations 1.22690 0.94133 1.05892 1.02181 1.20766 0.94829 0.92489 0.82681 1.22116 1.02327 0.92019 1.04365 1.22628 1.00854 1.04703 0.95745 1.45361 1.47076 1.09147 1.26977 1.22004 0.84230 0.85843 0.87089 1.93034 1.50358 1.66884 1.42354 1.42176 1.54167 1.10898 1.16773 1.16918 1.05672 0.82082 0.92817 1.21611 0.96708 0.92177 0.98353 1.21300 1.00400 0.95084 0.97528 1.21404 0.97489 1.00249 0.92006 1.21178 1.03774 0.91780 1.00769 1.21855 1.05089 0.98415 0.96216 1.84982 1.85191 1.18154 1.01687 1.21460 0.99353 0.96937 0.93212 1.20562 1.48744 0.95794 0.92170 0.93989 1.25808 0.93688 1.03653 0.94341 1.69990 1.47713 1.38713 1.00863 0.85733 0.79333 0.78704 0.79526 1.18296 1.20219 1.16817 0.93722 0.90178 0.89209 0.90667 0.88773 0.91552 0.88883 0.90409 0.92926 0.74820 0.74431 0.82764 0.82632 0.82963 0.86168 0.93646 0.93301 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.79 8.35 71.98 0.60 -3.19 16 2 C 0.18 2.80 1.06 3.61 0.00 2.80 16 3 C -0.15 -1.46 8.59 71.98 0.62 -0.84 16 4 C -0.18 -3.04 8.30 71.98 0.60 -2.44 16 5 N -0.66 -11.44 5.11 -309.89 -1.58 -13.03 16 6 C 0.57 13.97 7.30 179.06 1.31 15.28 16 7 S -0.66 -19.65 18.89 -56.49 -1.07 -20.72 16 8 N -0.62 -15.85 4.98 -189.49 -0.94 -16.80 16 9 C 0.13 3.78 6.06 38.22 0.23 4.01 16 10 C -0.06 -1.77 7.85 22.37 0.18 -1.59 16 11 C -0.12 -2.88 10.04 22.29 0.22 -2.66 16 12 C -0.09 -2.30 10.04 22.28 0.22 -2.07 16 13 C -0.15 -4.80 9.36 22.39 0.21 -4.59 16 14 C -0.10 -3.43 6.12 22.71 0.14 -3.29 16 15 S -0.15 -5.79 20.78 -56.49 -1.17 -6.97 16 16 C 0.04 1.77 3.16 71.24 0.23 1.99 16 17 C -0.53 -29.95 9.68 25.60 0.25 -29.71 16 18 H 0.04 2.63 7.96 -2.91 -0.02 2.61 16 19 C 0.03 1.47 5.47 84.65 0.46 1.93 16 20 N -0.93 -56.18 13.96 21.45 0.30 -55.88 16 21 Si 0.95 41.39 27.47 68.60 1.88 43.28 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 2.41 4.55 -16.77 -0.08 2.33 16 28 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 2.14 4.80 -15.31 -0.07 2.06 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.41 5.02 8.50 -92.71 -0.79 4.23 16 35 H 0.42 9.54 8.10 -92.71 -0.75 8.79 16 36 H 0.16 4.22 5.69 -13.52 -0.08 4.14 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.12 3.99 5.88 -2.91 -0.02 3.98 16 40 H 0.05 2.07 6.81 -2.39 -0.02 2.05 16 41 H 0.05 2.14 7.18 -2.39 -0.02 2.12 16 42 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.67 354.18 1.96 -66.72 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -0.73 Total: 27.75 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 5.27 Total: -24.37 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.23 Total: -85.70 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.88 Total: 43.28 kcal Atomic # 16 Polarization: -25.44 SS G_CDS: -2.24 Total: -27.69 kcal Total: -68.67 1.96 -66.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730952694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.615 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds