Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.53007 * 109.46991 * 119.99910 * 2 1 3 5 5 N 1.46502 * 109.47174 * 64.99606 * 4 2 1 6 6 C 1.34776 * 119.99993 * 179.97438 * 5 4 2 7 7 S 1.71198 * 119.99801 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99570 * 180.02562 * 6 5 4 9 9 C 1.40140 * 119.99581 * 185.46868 * 8 6 5 10 10 C 1.38654 * 120.09846 * 44.33299 * 9 8 6 11 11 C 1.38253 * 120.00686 * 180.02562 * 10 9 8 12 12 C 1.38294 * 120.20919 * 359.97438 * 11 10 9 13 13 C 1.38213 * 120.20032 * 0.02562 * 12 11 10 14 14 C 1.38774 * 119.98738 * 359.97438 * 13 12 11 15 15 S 1.76202 * 120.10397 * 180.02562 * 14 13 12 16 16 C 1.81397 * 102.99722 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.47096 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99856 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00498 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99224 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00314 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47094 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47181 * 119.99890 * 21 19 17 24 24 H 1.48501 * 109.47419 * 239.99650 * 21 19 17 25 25 H 1.08999 * 109.46878 * 300.00416 * 1 2 3 26 26 H 1.08997 * 109.46749 * 60.00028 * 1 2 3 27 27 H 1.09001 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46878 * 239.99584 * 2 1 3 29 29 H 1.09003 * 109.46857 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47255 * 299.99662 * 3 2 1 31 31 H 1.08999 * 109.47553 * 59.99997 * 3 2 1 32 32 H 1.09006 * 109.46947 * 305.00040 * 4 2 1 33 33 H 1.08997 * 109.46834 * 184.99890 * 4 2 1 34 34 H 0.97004 * 119.99725 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00300 * 5.47299 * 8 6 5 36 36 H 1.07999 * 119.99542 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.89827 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.89982 * 179.72385 * 12 11 10 39 39 H 1.07991 * 120.00771 * 179.97438 * 13 12 11 40 40 H 1.09007 * 109.47129 * 299.99623 * 16 15 14 41 41 H 1.09000 * 109.47550 * 59.99750 * 16 15 14 42 42 H 0.97001 * 119.99627 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1907 6 6 1.9963 -2.9682 2.1909 7 16 2.8857 -2.3796 3.5301 8 7 1.6401 -4.2669 2.1366 9 6 1.8964 -5.1099 3.2264 10 6 1.6273 -4.6795 4.5167 11 6 1.8815 -5.5124 5.5905 12 6 2.4036 -6.7760 5.3827 13 6 2.6751 -7.2138 4.1001 14 6 2.4232 -6.3845 3.0163 15 16 2.7675 -6.9398 1.3799 16 6 3.4191 -8.6118 1.6450 17 6 3.7661 -9.2322 0.3162 18 1 3.6098 -8.6764 -0.5966 19 6 4.2830 -10.5095 0.2656 20 7 4.4737 -11.1860 1.3771 21 14 4.7124 -11.2787 -1.3815 22 1 4.4053 -10.3181 -2.4716 23 1 6.1589 -11.6138 -1.4093 24 1 3.9140 -12.5160 -1.5732 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2617 2.1371 33 1 3.1263 -0.6444 1.2952 34 1 1.1487 -2.4664 0.4317 35 1 1.2064 -4.6182 1.3433 36 1 1.2192 -3.6935 4.6829 37 1 1.6708 -5.1756 6.5948 38 1 2.6044 -7.4209 6.2254 39 1 3.0832 -8.2010 3.9415 40 1 4.3132 -8.5590 2.2663 41 1 2.6652 -9.2207 2.1441 42 1 4.8378 -12.0844 1.3416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730952951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = 25.469194 kcal Electronic energy + Delta-G solvation = -21876.929053 eV Core-core repulsion = 18687.592966 eV Total energy + Delta-G solvation = -3189.336087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96002 -38.51269 -36.53438 -34.00122 -33.30594 -30.83044 -29.51063 -28.65357 -27.66450 -26.53155 -24.15014 -23.38333 -22.44922 -21.90041 -20.73323 -18.62676 -18.15818 -17.01511 -16.32405 -16.07608 -15.73476 -15.56144 -15.00014 -14.84794 -14.38876 -14.21102 -13.95027 -13.50535 -13.20699 -13.07839 -13.01991 -12.63007 -12.46564 -12.42673 -12.05061 -11.71246 -11.58884 -11.41451 -11.21111 -11.10111 -11.07301 -11.01377 -10.78099 -10.18026 -9.78988 -9.73817 -9.29740 -9.21595 -8.70030 -8.46402 -7.71999 -7.06041 -6.69503 -6.32796 -4.38911 1.06265 1.65402 1.78953 2.03677 2.30546 2.57435 3.16661 3.24410 3.28622 3.40156 3.57034 4.05587 4.23981 4.24409 4.41160 4.54573 5.04006 5.04922 5.18644 5.23108 5.24905 5.31847 5.35958 5.37778 5.46331 5.50698 5.67273 5.70512 5.76907 5.80343 5.84600 6.04363 6.18436 6.32390 6.57422 6.63301 6.81450 6.88595 6.89342 6.92821 7.19061 7.31802 7.59453 7.82451 8.61935 9.25418 10.78372 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.003192 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.111194 B = 8768.889509 C =10553.552162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.130 3.870 5 N -0.683 5.683 6 C 0.562 3.438 7 S -0.630 6.630 8 N -0.618 5.618 9 C 0.126 3.874 10 C -0.055 4.055 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.130 4.130 14 C -0.068 4.068 15 S -0.170 6.170 16 C 0.077 3.923 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.887 5.887 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.397 0.603 35 H 0.407 0.593 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 18.956 0.018 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.201 4.201 4 C 0.006 3.994 5 N -0.313 5.313 6 C 0.203 3.797 7 S -0.503 6.503 8 N -0.242 5.242 9 C 0.026 3.974 10 C -0.078 4.078 11 C -0.156 4.156 12 C -0.114 4.114 13 C -0.155 4.155 14 C -0.184 4.184 15 S 0.077 5.923 16 C -0.069 4.069 17 C -0.560 4.560 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.234 0.766 35 H 0.246 0.754 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.986 19.799 -0.174 21.744 hybrid contribution -0.316 -1.869 -1.069 2.177 sum -9.302 17.930 -1.243 20.237 Atomic orbital electron populations 1.21904 0.94636 1.01796 1.02491 1.21428 0.96489 0.97428 0.97714 1.21732 1.01591 0.94375 1.02419 1.21846 1.01908 0.76776 0.98854 1.45010 1.55059 1.10297 1.20924 1.22299 0.83838 0.83040 0.90509 1.93386 1.50235 1.80316 1.26357 1.42197 1.57331 1.05981 1.18727 1.16744 1.05256 0.89033 0.86324 1.20997 0.97273 0.99212 0.90278 1.20847 1.02474 0.94017 0.98309 1.21101 0.97878 0.95960 0.96454 1.21198 1.02380 1.00280 0.91663 1.21894 1.00890 0.96162 0.99474 1.85091 1.78845 1.24618 1.03781 1.21382 0.98677 0.85120 1.01752 1.20630 1.44415 0.99788 0.91149 0.91412 1.24950 0.94798 0.96432 0.97439 1.69950 1.43688 1.12048 1.26763 0.86270 0.78287 0.79137 0.82822 1.19444 1.20557 1.20595 0.92075 0.92144 0.92936 0.90430 0.91992 0.92038 0.92032 0.89414 0.89421 0.76615 0.75417 0.84636 0.85899 0.85945 0.84660 0.93565 0.93655 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.07 37.16 0.34 -0.47 16 2 C -0.11 -0.65 2.96 -90.62 -0.27 -0.92 16 3 C -0.14 -0.76 9.19 37.16 0.34 -0.42 16 4 C 0.13 1.10 4.52 -4.04 -0.02 1.08 16 5 N -0.68 -6.48 5.29 -62.03 -0.33 -6.80 16 6 C 0.56 7.63 7.74 -86.92 -0.67 6.96 16 7 S -0.63 -10.91 25.28 -107.50 -2.72 -13.63 16 8 N -0.62 -8.62 4.85 -11.24 -0.05 -8.68 16 9 C 0.13 2.09 5.85 -83.43 -0.49 1.60 16 10 C -0.05 -0.86 7.88 -39.42 -0.31 -1.17 16 11 C -0.13 -1.94 10.04 -39.56 -0.40 -2.34 16 12 C -0.09 -1.43 10.04 -39.57 -0.40 -1.83 16 13 C -0.13 -2.37 9.36 -39.39 -0.37 -2.74 16 14 C -0.07 -1.27 6.12 -38.91 -0.24 -1.51 16 15 S -0.17 -3.51 20.92 -107.50 -2.25 -5.76 16 16 C 0.08 1.92 4.09 36.01 0.15 2.06 16 17 C -0.52 -14.02 9.13 -34.44 -0.31 -14.33 16 18 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 19 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 20 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 21 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.28 7.18 -51.93 -0.37 -0.10 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.81 7.99 -51.93 -0.42 0.40 16 33 H 0.09 0.88 7.99 -51.93 -0.41 0.47 16 34 H 0.40 2.78 7.68 -40.82 -0.31 2.47 16 35 H 0.41 4.92 8.34 -40.82 -0.34 4.58 16 36 H 0.14 2.07 6.52 -52.49 -0.34 1.73 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.14 2.62 5.88 -52.49 -0.31 2.31 16 40 H 0.05 1.21 7.75 -51.92 -0.40 0.81 16 41 H 0.05 1.16 7.75 -51.92 -0.40 0.76 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -31.30 370.00 -13.04 -44.34 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.23 Total: 5.76 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.74 Total: -12.26 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.35 Total: -39.64 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -14.42 SS G_CDS: -4.97 Total: -19.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.30 -13.04 -44.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730952951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.807 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds