Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.53007 * 109.46991 * 119.99910 * 2 1 3 5 5 N 1.46502 * 109.47174 * 64.99606 * 4 2 1 6 6 C 1.34776 * 119.99993 * 179.97438 * 5 4 2 7 7 S 1.71198 * 119.99801 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99570 * 180.02562 * 6 5 4 9 9 C 1.40140 * 119.99581 * 185.46868 * 8 6 5 10 10 C 1.38654 * 120.09846 * 44.33299 * 9 8 6 11 11 C 1.38253 * 120.00686 * 180.02562 * 10 9 8 12 12 C 1.38294 * 120.20919 * 359.97438 * 11 10 9 13 13 C 1.38213 * 120.20032 * 0.02562 * 12 11 10 14 14 C 1.38774 * 119.98738 * 359.97438 * 13 12 11 15 15 S 1.76202 * 120.10397 * 180.02562 * 14 13 12 16 16 C 1.81397 * 102.99722 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.47096 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99856 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00498 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99224 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00314 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47094 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47181 * 119.99890 * 21 19 17 24 24 H 1.48501 * 109.47419 * 239.99650 * 21 19 17 25 25 H 1.08999 * 109.46878 * 300.00416 * 1 2 3 26 26 H 1.08997 * 109.46749 * 60.00028 * 1 2 3 27 27 H 1.09001 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46878 * 239.99584 * 2 1 3 29 29 H 1.09003 * 109.46857 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47255 * 299.99662 * 3 2 1 31 31 H 1.08999 * 109.47553 * 59.99997 * 3 2 1 32 32 H 1.09006 * 109.46947 * 305.00040 * 4 2 1 33 33 H 1.08997 * 109.46834 * 184.99890 * 4 2 1 34 34 H 0.97004 * 119.99725 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00300 * 5.47299 * 8 6 5 36 36 H 1.07999 * 119.99542 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.89827 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.89982 * 179.72385 * 12 11 10 39 39 H 1.07991 * 120.00771 * 179.97438 * 13 12 11 40 40 H 1.09007 * 109.47129 * 299.99623 * 16 15 14 41 41 H 1.09000 * 109.47550 * 59.99750 * 16 15 14 42 42 H 0.97001 * 119.99627 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1907 6 6 1.9963 -2.9682 2.1909 7 16 2.8857 -2.3796 3.5301 8 7 1.6401 -4.2669 2.1366 9 6 1.8964 -5.1099 3.2264 10 6 1.6273 -4.6795 4.5167 11 6 1.8815 -5.5124 5.5905 12 6 2.4036 -6.7760 5.3827 13 6 2.6751 -7.2138 4.1001 14 6 2.4232 -6.3845 3.0163 15 16 2.7675 -6.9398 1.3799 16 6 3.4191 -8.6118 1.6450 17 6 3.7661 -9.2322 0.3162 18 1 3.6098 -8.6764 -0.5966 19 6 4.2830 -10.5095 0.2656 20 7 4.4737 -11.1860 1.3771 21 14 4.7124 -11.2787 -1.3815 22 1 4.4053 -10.3181 -2.4716 23 1 6.1589 -11.6138 -1.4093 24 1 3.9140 -12.5160 -1.5732 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2617 2.1371 33 1 3.1263 -0.6444 1.2952 34 1 1.1487 -2.4664 0.4317 35 1 1.2064 -4.6182 1.3433 36 1 1.2192 -3.6935 4.6829 37 1 1.6708 -5.1756 6.5948 38 1 2.6044 -7.4209 6.2254 39 1 3.0832 -8.2010 3.9415 40 1 4.3132 -8.5590 2.2663 41 1 2.6652 -9.2207 2.1441 42 1 4.8378 -12.0844 1.3416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730952951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = 9.483064 kcal Electronic energy + Delta-G solvation = -21877.622263 eV Core-core repulsion = 18687.592966 eV Total energy + Delta-G solvation = -3190.029297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14472 -39.53289 -37.46948 -35.38967 -34.83555 -32.19645 -30.82960 -30.53063 -28.09671 -27.38560 -25.54315 -25.04253 -23.74315 -23.15526 -21.40646 -19.84455 -19.28213 -18.61704 -18.00390 -17.11843 -16.90919 -16.67998 -16.48383 -15.92157 -15.79799 -15.08787 -14.91206 -14.73652 -14.70479 -14.54191 -14.27620 -14.00676 -13.67761 -13.21771 -13.06360 -12.89110 -12.80037 -12.66576 -12.50629 -12.36569 -12.07466 -11.94162 -11.79977 -11.70591 -11.64154 -11.05486 -10.90219 -10.82442 -10.55643 -9.67854 -9.03345 -8.40777 -8.38473 -8.27292 -6.53079 -0.13980 0.34054 0.54736 0.70993 0.87693 1.38299 1.39076 1.44093 1.52603 1.74884 2.32793 2.43934 2.76843 2.97023 3.66113 3.88547 3.90250 4.04369 4.15576 4.29130 4.46072 4.48940 4.52966 4.64462 4.65885 4.78623 4.82838 4.83495 4.88074 4.92524 5.01996 5.06082 5.13217 5.20162 5.35357 5.36855 5.40175 5.48650 5.50443 5.57883 5.76021 5.78941 6.04685 6.21617 6.54032 7.15978 8.73799 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.003192 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.111194 B = 8768.889509 C =10553.552162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.143 4.143 4 C 0.129 3.871 5 N -0.656 5.656 6 C 0.578 3.422 7 S -0.700 6.700 8 N -0.615 5.615 9 C 0.130 3.870 10 C -0.058 4.058 11 C -0.120 4.120 12 C -0.091 4.091 13 C -0.149 4.149 14 C -0.094 4.094 15 S -0.156 6.156 16 C 0.082 3.918 17 C -0.542 4.542 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.921 5.921 21 Si 0.977 3.023 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.272 1.272 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.417 0.583 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.019 0.981 41 H 0.025 0.975 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 20.302 -0.908 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.201 4.201 4 C 0.007 3.993 5 N -0.284 5.284 6 C 0.215 3.785 7 S -0.574 6.574 8 N -0.241 5.241 9 C 0.030 3.970 10 C -0.080 4.080 11 C -0.142 4.142 12 C -0.111 4.111 13 C -0.174 4.174 14 C -0.210 4.210 15 S 0.089 5.911 16 C -0.065 4.065 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.184 4.184 20 N -0.559 5.559 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.197 1.197 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.254 0.746 35 H 0.258 0.742 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.170 21.185 -1.129 23.527 hybrid contribution -0.035 -2.149 -0.710 2.264 sum -10.205 19.036 -1.839 21.677 Atomic orbital electron populations 1.21908 0.93859 1.02070 1.02932 1.21382 0.96987 0.97438 0.96265 1.21743 1.01387 0.93950 1.03037 1.21968 1.01154 0.75953 1.00275 1.45063 1.53088 1.10308 1.19974 1.21890 0.83231 0.82967 0.90375 1.93523 1.53527 1.81032 1.29290 1.42054 1.57479 1.05864 1.18678 1.16805 1.04320 0.88380 0.87486 1.21216 0.97109 0.99587 0.90125 1.21282 1.00139 0.93028 0.99721 1.21381 0.97020 0.96788 0.95916 1.21180 1.03429 0.99601 0.93166 1.21881 1.03358 0.97495 0.98223 1.84648 1.79330 1.21311 1.05765 1.20997 0.97118 0.87999 1.00393 1.20965 1.44808 1.00481 0.91792 0.91516 1.25901 0.94378 0.96889 1.01221 1.70058 1.44286 1.12523 1.29018 0.85212 0.78150 0.78334 0.78268 1.18649 1.19993 1.19697 0.92340 0.91077 0.92740 0.89760 0.92392 0.90844 0.92019 0.89898 0.90802 0.74564 0.74213 0.83926 0.82345 0.83199 0.86976 0.96305 0.95694 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.07 71.98 0.65 -0.57 16 2 C -0.10 -0.97 2.96 -10.79 -0.03 -1.00 16 3 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 4 C 0.13 2.01 4.52 86.38 0.39 2.40 16 5 N -0.66 -11.25 5.29 -350.15 -1.85 -13.10 16 6 C 0.58 14.99 7.74 179.05 1.39 16.37 16 7 S -0.70 -23.95 25.28 -56.49 -1.43 -25.38 16 8 N -0.62 -16.47 4.85 -189.48 -0.92 -17.39 16 9 C 0.13 4.22 5.85 38.22 0.22 4.44 16 10 C -0.06 -1.71 7.88 22.37 0.18 -1.53 16 11 C -0.12 -3.20 10.04 22.29 0.22 -2.97 16 12 C -0.09 -2.68 10.04 22.28 0.22 -2.45 16 13 C -0.15 -5.55 9.36 22.39 0.21 -5.34 16 14 C -0.09 -3.55 6.12 22.71 0.14 -3.42 16 15 S -0.16 -6.57 20.92 -56.49 -1.18 -7.75 16 16 C 0.08 4.28 4.09 71.24 0.29 4.57 16 17 C -0.54 -29.92 9.13 25.60 0.23 -29.69 16 18 H 0.07 3.61 7.71 -2.91 -0.02 3.59 16 19 C 0.02 0.98 5.46 84.66 0.46 1.44 16 20 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 21 Si 0.98 42.39 29.54 68.60 2.03 44.42 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.42 7.18 -2.39 -0.02 0.40 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 1.45 7.99 -2.38 -0.02 1.43 16 33 H 0.07 1.43 7.99 -2.39 -0.02 1.41 16 34 H 0.41 4.71 7.68 -92.71 -0.71 4.00 16 35 H 0.42 9.48 8.34 -92.71 -0.77 8.70 16 36 H 0.14 4.11 6.52 -2.91 -0.02 4.09 16 37 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.11 4.65 5.88 -2.92 -0.02 4.63 16 40 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 41 H 0.02 1.36 7.75 -2.39 -0.02 1.34 16 42 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.53 370.00 1.72 -67.81 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.45 Total: 22.41 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 5.24 Total: -18.33 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.49 Total: -83.17 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -30.52 SS G_CDS: -2.61 Total: -33.13 kcal Total: -69.53 1.72 -67.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730952951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.289 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds