Wall clock time and date at job start Tue Mar 31 2020 14:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 H 1.09004 * 109.47105 * 54.99620 * 3 2 1 5 5 C 1.52994 * 109.47153 * 174.99954 * 3 2 1 6 6 N 1.46502 * 109.46974 * 294.99848 * 3 2 1 7 7 C 1.34772 * 119.99947 * 154.99573 * 6 3 2 8 8 S 1.71202 * 120.00323 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00224 * 179.97438 * 7 6 3 10 10 C 1.40131 * 120.00430 * 184.31868 * 9 7 6 11 11 C 1.38649 * 120.10013 * 312.66699 * 10 9 7 12 12 C 1.38255 * 120.00789 * 180.02562 * 11 10 9 13 13 C 1.38292 * 120.21043 * 0.02562 * 12 11 10 14 14 C 1.38204 * 120.20041 * 0.02562 * 13 12 11 15 15 C 1.38777 * 119.98640 * 359.97017 * 14 13 12 16 16 S 1.76201 * 120.09928 * 180.02562 * 15 14 13 17 17 C 1.81396 * 103.00506 * 0.02562 * 16 15 14 18 18 C 1.50695 * 109.47253 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00302 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99653 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00395 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47250 * 89.99768 * 22 20 18 24 24 H 1.48503 * 109.47086 * 210.00034 * 22 20 18 25 25 H 1.48507 * 109.47151 * 330.00104 * 22 20 18 26 26 H 1.09006 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47101 * 300.00372 * 1 2 3 28 28 H 1.09001 * 109.46845 * 60.00142 * 1 2 3 29 29 H 1.08995 * 109.47622 * 239.99561 * 2 1 3 30 30 H 1.09001 * 109.46845 * 119.99858 * 2 1 3 31 31 H 1.09005 * 109.47154 * 299.99527 * 5 3 2 32 32 H 1.08995 * 109.47473 * 60.00124 * 5 3 2 33 33 H 1.09006 * 109.47109 * 180.02562 * 5 3 2 34 34 H 0.97000 * 119.99463 * 334.99904 * 6 3 2 35 35 H 0.97006 * 119.99552 * 4.31927 * 9 7 6 36 36 H 1.07997 * 119.99543 * 0.04505 * 11 10 9 37 37 H 1.08006 * 119.89534 * 180.28442 * 12 11 10 38 38 H 1.08004 * 119.89629 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.01015 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47163 * 300.00256 * 17 16 15 41 41 H 1.09011 * 109.46823 * 59.99635 * 17 16 15 42 42 H 0.97002 * 120.00360 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4383 -1.2996 8 16 1.8179 4.3764 0.1024 9 7 1.1696 4.0410 -2.4514 10 6 1.1255 5.4396 -2.5259 11 6 0.4924 6.1694 -1.5315 12 6 0.4496 7.5492 -1.6072 13 6 1.0365 8.2061 -2.6733 14 6 1.6689 7.4872 -3.6700 15 6 1.7168 6.1019 -3.6021 16 16 2.5230 5.1824 -4.8708 17 6 3.1086 6.4741 -6.0017 18 6 3.8325 5.8373 -7.1599 19 1 3.9302 4.7630 -7.2108 20 6 4.3702 6.6263 -8.1546 21 7 4.2509 7.9346 -8.0929 22 14 5.2669 5.8369 -9.5906 23 1 4.3005 5.5524 -10.6817 24 1 6.3165 6.7624 -10.0878 25 1 5.8966 4.5683 -9.1440 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8531 0.9570 1.0572 32 1 3.9994 0.9053 -0.7160 33 1 3.9281 2.4720 0.1262 34 1 1.4872 1.5659 -2.0463 35 1 0.9438 3.5064 -3.2288 36 1 0.0329 5.6599 -0.6974 37 1 -0.0401 8.1161 -0.8292 38 1 0.9997 9.2841 -2.7276 39 1 2.1265 8.0033 -4.5009 40 1 2.2575 7.0443 -6.3740 41 1 3.7884 7.1408 -5.4710 42 1 4.6295 8.4897 -8.7925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730953066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:16 Heat of formation + Delta-G solvation = 27.631576 kcal Electronic energy + Delta-G solvation = -22178.573275 eV Core-core repulsion = 18989.330956 eV Total energy + Delta-G solvation = -3189.242319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99007 -38.60410 -36.30346 -33.35080 -33.01655 -30.81751 -30.26523 -28.94244 -28.64912 -24.85153 -23.78392 -23.36605 -22.53610 -22.07679 -21.15604 -18.76363 -18.05234 -16.99825 -16.31517 -16.13766 -15.52850 -15.32454 -14.91276 -14.54283 -14.42196 -14.14970 -13.80227 -13.54936 -13.39506 -13.05063 -12.98905 -12.49241 -12.42387 -12.13718 -12.10386 -11.73605 -11.54760 -11.44395 -11.15354 -11.12870 -10.99791 -10.98359 -10.79608 -10.18513 -9.77158 -9.75895 -9.29513 -9.22502 -8.69981 -8.41315 -7.74132 -6.97486 -6.70703 -6.33034 -4.39398 1.11174 1.65783 1.77717 2.02651 2.30395 2.59673 3.17173 3.23685 3.27319 3.41329 3.56322 4.05941 4.23553 4.32344 4.62584 4.68114 5.04531 5.15755 5.20454 5.26122 5.27657 5.34282 5.40856 5.49859 5.56184 5.60373 5.69656 5.77271 5.82202 5.86159 6.10183 6.15875 6.24928 6.37153 6.59622 6.66521 6.82934 6.88172 6.91461 6.92406 7.20959 7.33692 7.58695 7.82040 8.61164 9.24939 10.78037 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.003413 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.627108 B = 8200.955243 C = 9774.096678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.142 3.858 4 H 0.116 0.884 5 C -0.165 4.165 6 N -0.678 5.678 7 C 0.566 3.434 8 S -0.633 6.633 9 N -0.617 5.617 10 C 0.119 3.881 11 C -0.050 4.050 12 C -0.138 4.138 13 C -0.091 4.091 14 C -0.134 4.134 15 C -0.067 4.067 16 S -0.170 6.170 17 C 0.078 3.922 18 C -0.521 4.521 19 H 0.067 0.933 20 C 0.069 3.931 21 N -0.887 5.887 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.271 1.271 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.397 0.603 35 H 0.407 0.593 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 -11.931 13.807 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.038 3.962 4 H 0.134 0.866 5 C -0.224 4.224 6 N -0.308 5.308 7 C 0.207 3.793 8 S -0.504 6.504 9 N -0.241 5.241 10 C 0.019 3.981 11 C -0.073 4.073 12 C -0.160 4.160 13 C -0.112 4.112 14 C -0.159 4.159 15 C -0.182 4.182 16 S 0.077 5.923 17 C -0.069 4.069 18 C -0.561 4.561 19 H 0.085 0.915 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.195 1.195 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.245 0.755 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.995 -12.418 14.533 20.720 hybrid contribution 0.160 0.097 -2.249 2.257 sum -7.836 -12.320 12.284 19.081 Atomic orbital electron populations 1.21793 0.95215 1.01832 1.02330 1.21893 0.96622 0.95157 1.03435 1.21502 0.96274 0.92530 0.85915 0.86607 1.22180 0.94168 1.04138 1.01920 1.45117 1.67113 1.03466 1.15066 1.22307 0.79936 0.85974 0.91109 1.93305 1.73201 1.62789 1.21141 1.42154 1.64067 1.06602 1.11276 1.16757 1.03857 0.79623 0.97816 1.21200 0.95679 0.94076 0.96378 1.20875 1.02628 0.93687 0.98840 1.21111 0.96696 0.99695 0.93672 1.21185 1.02028 0.91918 1.00730 1.21934 1.00341 0.96990 0.98975 1.85090 1.65958 1.20409 1.20893 1.21373 0.99163 0.92470 0.93894 1.20585 1.36587 0.93739 1.05157 0.91477 1.24945 0.95685 0.94800 0.98136 1.69936 1.44562 1.03650 1.34297 0.86328 0.79343 0.79223 0.81644 1.20240 1.20789 1.19542 0.92401 0.92140 0.92938 0.91442 0.89653 0.91176 0.92786 0.90460 0.76667 0.75462 0.83987 0.85926 0.86001 0.84713 0.93673 0.93610 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.80 37.16 0.36 -0.58 16 2 C -0.13 -0.79 5.47 -26.73 -0.15 -0.94 16 3 C 0.14 1.23 2.34 -67.93 -0.16 1.07 16 4 H 0.12 1.22 6.82 -51.93 -0.35 0.87 16 5 C -0.17 -1.54 9.43 37.15 0.35 -1.19 16 6 N -0.68 -6.49 4.53 -55.52 -0.25 -6.74 16 7 C 0.57 7.55 7.81 -86.92 -0.68 6.87 16 8 S -0.63 -10.56 23.82 -107.50 -2.56 -13.12 16 9 N -0.62 -8.50 4.79 -11.25 -0.05 -8.55 16 10 C 0.12 1.96 5.89 -83.43 -0.49 1.47 16 11 C -0.05 -0.78 7.88 -39.42 -0.31 -1.09 16 12 C -0.14 -1.99 10.04 -39.56 -0.40 -2.39 16 13 C -0.09 -1.40 10.04 -39.57 -0.40 -1.79 16 14 C -0.13 -2.43 9.36 -39.39 -0.37 -2.79 16 15 C -0.07 -1.24 6.12 -38.91 -0.24 -1.47 16 16 S -0.17 -3.49 20.99 -107.50 -2.26 -5.75 16 17 C 0.08 1.92 4.09 36.00 0.15 2.07 16 18 C -0.52 -14.01 9.13 -34.44 -0.31 -14.33 16 19 H 0.07 1.79 7.71 -52.49 -0.40 1.38 16 20 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 21 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 22 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 7.75 -51.93 -0.40 -0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.96 7.48 -51.93 -0.39 0.58 16 34 H 0.40 2.89 8.62 -40.82 -0.35 2.54 16 35 H 0.41 4.84 8.45 -40.82 -0.34 4.49 16 36 H 0.14 2.17 6.31 -49.76 -0.31 1.86 16 37 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.14 2.61 5.88 -52.49 -0.31 2.30 16 40 H 0.05 1.16 7.75 -51.92 -0.40 0.75 16 41 H 0.05 1.20 7.75 -51.92 -0.40 0.80 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -30.70 368.93 -12.78 -43.48 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.19 Total: 7.00 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.74 Total: -13.32 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.43 Total: -39.42 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -14.05 SS G_CDS: -4.82 Total: -18.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.70 -12.78 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730953066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.109 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds