Wall clock time and date at job start Tue Mar 31 2020 14:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 H 1.09004 * 109.47105 * 54.99620 * 3 2 1 5 5 C 1.52994 * 109.47153 * 174.99954 * 3 2 1 6 6 N 1.46502 * 109.46974 * 294.99848 * 3 2 1 7 7 C 1.34772 * 119.99947 * 154.99573 * 6 3 2 8 8 S 1.71202 * 120.00323 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00224 * 179.97438 * 7 6 3 10 10 C 1.40131 * 120.00430 * 184.31868 * 9 7 6 11 11 C 1.38649 * 120.10013 * 312.66699 * 10 9 7 12 12 C 1.38255 * 120.00789 * 180.02562 * 11 10 9 13 13 C 1.38292 * 120.21043 * 0.02562 * 12 11 10 14 14 C 1.38204 * 120.20041 * 0.02562 * 13 12 11 15 15 C 1.38777 * 119.98640 * 359.97017 * 14 13 12 16 16 S 1.76201 * 120.09928 * 180.02562 * 15 14 13 17 17 C 1.81396 * 103.00506 * 0.02562 * 16 15 14 18 18 C 1.50695 * 109.47253 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00302 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99653 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00395 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47250 * 89.99768 * 22 20 18 24 24 H 1.48503 * 109.47086 * 210.00034 * 22 20 18 25 25 H 1.48507 * 109.47151 * 330.00104 * 22 20 18 26 26 H 1.09006 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47101 * 300.00372 * 1 2 3 28 28 H 1.09001 * 109.46845 * 60.00142 * 1 2 3 29 29 H 1.08995 * 109.47622 * 239.99561 * 2 1 3 30 30 H 1.09001 * 109.46845 * 119.99858 * 2 1 3 31 31 H 1.09005 * 109.47154 * 299.99527 * 5 3 2 32 32 H 1.08995 * 109.47473 * 60.00124 * 5 3 2 33 33 H 1.09006 * 109.47109 * 180.02562 * 5 3 2 34 34 H 0.97000 * 119.99463 * 334.99904 * 6 3 2 35 35 H 0.97006 * 119.99552 * 4.31927 * 9 7 6 36 36 H 1.07997 * 119.99543 * 0.04505 * 11 10 9 37 37 H 1.08006 * 119.89534 * 180.28442 * 12 11 10 38 38 H 1.08004 * 119.89629 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.01015 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47163 * 300.00256 * 17 16 15 41 41 H 1.09011 * 109.46823 * 59.99635 * 17 16 15 42 42 H 0.97002 * 120.00360 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4383 -1.2996 8 16 1.8179 4.3764 0.1024 9 7 1.1696 4.0410 -2.4514 10 6 1.1255 5.4396 -2.5259 11 6 0.4924 6.1694 -1.5315 12 6 0.4496 7.5492 -1.6072 13 6 1.0365 8.2061 -2.6733 14 6 1.6689 7.4872 -3.6700 15 6 1.7168 6.1019 -3.6021 16 16 2.5230 5.1824 -4.8708 17 6 3.1086 6.4741 -6.0017 18 6 3.8325 5.8373 -7.1599 19 1 3.9302 4.7630 -7.2108 20 6 4.3702 6.6263 -8.1546 21 7 4.2509 7.9346 -8.0929 22 14 5.2669 5.8369 -9.5906 23 1 4.3005 5.5524 -10.6817 24 1 6.3165 6.7624 -10.0878 25 1 5.8966 4.5683 -9.1440 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8531 0.9570 1.0572 32 1 3.9994 0.9053 -0.7160 33 1 3.9281 2.4720 0.1262 34 1 1.4872 1.5659 -2.0463 35 1 0.9438 3.5064 -3.2288 36 1 0.0329 5.6599 -0.6974 37 1 -0.0401 8.1161 -0.8292 38 1 0.9997 9.2841 -2.7276 39 1 2.1265 8.0033 -4.5009 40 1 2.2575 7.0443 -6.3740 41 1 3.7884 7.1408 -5.4710 42 1 4.6295 8.4897 -8.7925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730953066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:16 Heat of formation + Delta-G solvation = 12.187968 kcal Electronic energy + Delta-G solvation = -22179.242960 eV Core-core repulsion = 18989.330956 eV Total energy + Delta-G solvation = -3189.912004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14873 -39.64598 -37.34306 -35.37771 -33.87980 -32.18387 -31.07934 -30.65549 -30.02814 -25.95654 -25.29477 -24.52196 -23.75989 -23.24921 -22.06417 -19.91016 -19.28508 -18.56596 -17.98303 -17.20750 -16.87663 -16.53525 -16.37286 -15.85032 -15.38117 -15.01797 -14.85698 -14.75684 -14.67086 -14.42974 -14.31127 -14.26802 -13.77514 -13.21725 -13.02207 -12.78964 -12.72745 -12.66098 -12.49590 -12.35517 -12.27202 -11.96061 -11.81728 -11.68248 -11.66321 -11.05335 -10.89121 -10.81159 -10.55295 -9.62703 -9.00269 -8.38410 -8.29448 -8.26508 -6.53301 -0.07923 0.36033 0.53675 0.71619 0.88490 1.38711 1.39602 1.48579 1.51606 1.74871 2.32714 2.46370 2.77384 2.96982 3.69546 3.91363 4.01162 4.13155 4.17181 4.31192 4.47069 4.48062 4.51878 4.59938 4.71666 4.77020 4.82939 4.83707 4.88425 4.92700 5.02128 5.10723 5.18105 5.27327 5.32710 5.38776 5.39455 5.49614 5.53858 5.59536 5.78692 5.80358 6.07198 6.26302 6.53627 7.15806 8.73613 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.003413 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.627108 B = 8200.955243 C = 9774.096678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C 0.141 3.859 4 H 0.099 0.901 5 C -0.161 4.161 6 N -0.654 5.654 7 C 0.580 3.420 8 S -0.695 6.695 9 N -0.615 5.615 10 C 0.124 3.876 11 C -0.053 4.053 12 C -0.124 4.124 13 C -0.089 4.089 14 C -0.152 4.152 15 C -0.092 4.092 16 S -0.154 6.154 17 C 0.082 3.918 18 C -0.543 4.543 19 H 0.067 0.933 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.977 3.023 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.264 1.264 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.413 0.587 35 H 0.417 0.583 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.111 0.889 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -13.963 14.307 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.037 3.963 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.282 5.282 7 C 0.217 3.783 8 S -0.567 6.567 9 N -0.241 5.241 10 C 0.024 3.976 11 C -0.076 4.076 12 C -0.146 4.146 13 C -0.109 4.109 14 C -0.177 4.177 15 C -0.208 4.208 16 S 0.091 5.909 17 C -0.065 4.065 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.183 4.183 21 N -0.559 5.559 22 Si 0.800 3.200 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.188 1.188 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.252 0.748 35 H 0.257 0.743 36 H 0.166 0.834 37 H 0.175 0.825 38 H 0.167 0.833 39 H 0.129 0.871 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.625 -14.501 15.048 22.608 hybrid contribution 0.268 0.694 -2.257 2.376 sum -8.357 -13.806 12.791 20.593 Atomic orbital electron populations 1.21795 0.95229 1.02488 1.01671 1.21857 0.96442 0.92880 1.04906 1.21636 0.96001 0.94023 0.84617 0.88304 1.22133 0.94290 1.02204 1.03355 1.45213 1.64565 1.02164 1.16286 1.21937 0.79621 0.86930 0.89800 1.93417 1.75751 1.64319 1.23234 1.42012 1.64375 1.05896 1.11785 1.16804 1.02941 0.80787 0.97020 1.21403 0.95475 0.94737 0.96025 1.21298 1.00985 0.93483 0.98788 1.21382 0.95676 1.01042 0.92837 1.21162 1.03178 0.92102 1.01245 1.21928 1.02168 0.97266 0.99433 1.84639 1.66891 1.18495 1.20855 1.20989 0.97734 0.93327 0.94467 1.20931 1.37128 0.93901 1.06182 0.91495 1.25899 0.96280 0.95267 1.00896 1.70050 1.45403 1.05076 1.35361 0.85268 0.78200 0.78422 0.78130 1.19208 1.20212 1.18823 0.91108 0.93000 0.93443 0.90031 0.88083 0.89309 0.91945 0.93919 0.74773 0.74278 0.83397 0.82456 0.83289 0.87063 0.95784 0.96373 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.80 71.98 0.71 -0.80 16 2 C -0.12 -1.10 5.47 30.59 0.17 -0.93 16 3 C 0.14 2.20 2.34 44.99 0.11 2.30 16 4 H 0.10 2.00 6.82 -2.39 -0.02 1.98 16 5 C -0.16 -2.77 9.43 71.98 0.68 -2.09 16 6 N -0.65 -11.42 4.53 -329.57 -1.49 -12.91 16 7 C 0.58 14.93 7.81 179.06 1.40 16.33 16 8 S -0.70 -23.08 23.82 -56.49 -1.35 -24.43 16 9 N -0.62 -16.41 4.79 -189.49 -0.91 -17.32 16 10 C 0.12 4.03 5.89 38.22 0.22 4.26 16 11 C -0.05 -1.58 7.88 22.37 0.18 -1.41 16 12 C -0.12 -3.32 10.04 22.29 0.22 -3.10 16 13 C -0.09 -2.64 10.04 22.27 0.22 -2.42 16 14 C -0.15 -5.67 9.36 22.39 0.21 -5.46 16 15 C -0.09 -3.49 6.12 22.71 0.14 -3.35 16 16 S -0.15 -6.48 20.99 -56.49 -1.19 -7.66 16 17 C 0.08 4.27 4.09 71.23 0.29 4.56 16 18 C -0.54 -29.93 9.13 25.60 0.23 -29.70 16 19 H 0.07 3.61 7.71 -2.91 -0.02 3.58 16 20 C 0.02 1.00 5.46 84.66 0.46 1.47 16 21 N -0.92 -52.99 13.29 21.45 0.28 -52.71 16 22 Si 0.98 42.29 29.54 68.60 2.03 44.31 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 26 H 0.07 0.53 8.14 -2.38 -0.02 0.52 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.51 7.75 -2.39 -0.02 0.49 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.05 7.48 -2.38 -0.02 1.03 16 34 H 0.41 4.97 8.62 -92.71 -0.80 4.17 16 35 H 0.42 9.41 8.45 -92.70 -0.78 8.62 16 36 H 0.15 4.33 6.31 -4.65 -0.03 4.30 16 37 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 39 H 0.11 4.63 5.88 -2.91 -0.02 4.61 16 40 H 0.02 1.31 7.75 -2.39 -0.02 1.29 16 41 H 0.02 1.01 7.75 -2.38 -0.02 0.99 16 42 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -68.85 368.93 2.06 -66.79 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.55 Total: 24.27 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 5.24 Total: -20.34 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.12 Total: -82.94 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -29.56 SS G_CDS: -2.53 Total: -32.09 kcal Total: -68.85 2.06 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730953066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.974 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds