Wall clock time and date at job start Tue Mar 31 2020 14:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47018 * 305.00594 * 3 2 1 5 5 C 1.52995 * 109.46760 * 185.00383 * 3 2 1 6 6 N 1.46502 * 109.46952 * 65.00167 * 3 2 1 7 7 C 1.34776 * 119.99993 * 204.99548 * 6 3 2 8 8 S 1.71198 * 119.99801 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99570 * 180.02562 * 7 6 3 10 10 C 1.40140 * 119.99581 * 185.46868 * 9 7 6 11 11 C 1.38654 * 120.09846 * 44.33299 * 10 9 7 12 12 C 1.38253 * 120.00686 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.20919 * 359.97438 * 12 11 10 14 14 C 1.38213 * 120.20032 * 0.02562 * 13 12 11 15 15 C 1.38774 * 119.98738 * 359.97438 * 14 13 12 16 16 S 1.76202 * 120.10397 * 180.02562 * 15 14 13 17 17 C 1.81397 * 102.99722 * 359.97438 * 16 15 14 18 18 C 1.50700 * 109.47096 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00498 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99224 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00314 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47094 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47181 * 119.99890 * 22 20 18 25 25 H 1.48501 * 109.47419 * 239.99650 * 22 20 18 26 26 H 1.09001 * 109.46734 * 299.99716 * 1 2 3 27 27 H 1.08995 * 109.47468 * 59.99490 * 1 2 3 28 28 H 1.09004 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46734 * 240.00284 * 2 1 3 30 30 H 1.08995 * 109.47468 * 120.00510 * 2 1 3 31 31 H 1.09009 * 109.46910 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47527 * 299.99899 * 5 3 2 33 33 H 1.08999 * 109.47662 * 60.00784 * 5 3 2 34 34 H 0.97004 * 119.99725 * 25.00531 * 6 3 2 35 35 H 0.96998 * 120.00300 * 5.47299 * 9 7 6 36 36 H 1.07999 * 119.99542 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.89827 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.89982 * 179.72385 * 13 12 11 39 39 H 1.07991 * 120.00771 * 179.97438 * 14 13 12 40 40 H 1.09007 * 109.47129 * 299.99623 * 17 16 15 41 41 H 1.09000 * 109.47550 * 59.99750 * 17 16 15 42 42 H 0.97001 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 1.6525 2.0974 1.2519 7 6 1.5258 3.4384 1.2997 8 16 1.8170 4.3762 -0.1026 9 7 1.1697 4.0409 2.4515 10 6 0.9263 5.4208 2.4743 11 6 0.1736 6.0107 1.4703 12 6 -0.0649 7.3723 1.4943 13 6 0.4446 8.1500 2.5181 14 6 1.1960 7.5710 3.5232 15 6 1.4405 6.2050 3.5072 16 16 2.3974 5.4634 4.7875 17 6 2.8162 6.8716 5.8516 18 6 3.6478 6.3931 7.0137 19 1 3.8989 5.3465 7.1034 20 6 4.0882 7.2914 7.9626 21 7 3.7827 8.5659 7.8530 22 14 5.1184 6.6983 9.4033 23 1 5.3204 5.2309 9.2965 24 1 6.4362 7.3826 9.3845 25 1 4.4171 7.0097 10.6748 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9282 2.4719 -0.1254 32 1 3.9995 0.9051 0.7159 33 1 3.8531 0.9570 -1.0573 34 1 1.4872 1.5660 2.0463 35 1 1.0821 3.5194 3.2647 36 1 -0.2263 5.4065 0.6694 37 1 -0.6518 7.8299 0.7116 38 1 0.2589 9.2139 2.5295 39 1 1.5927 8.1813 4.3209 40 1 3.3818 7.6054 5.2773 41 1 1.9004 7.3299 6.2250 42 1 4.0928 9.1980 8.5203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730953067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:19 Heat of formation + Delta-G solvation = 27.484626 kcal Electronic energy + Delta-G solvation = -22156.016912 eV Core-core repulsion = 18966.768221 eV Total energy + Delta-G solvation = -3189.248691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00542 -38.60987 -36.31151 -33.34783 -33.02340 -30.83118 -30.27295 -28.95297 -28.64873 -24.86582 -23.79477 -23.36751 -22.54312 -22.08396 -21.15831 -18.75900 -18.06105 -17.02294 -16.32205 -16.15651 -15.51461 -15.29053 -14.92438 -14.53731 -14.42917 -14.15716 -13.81174 -13.59416 -13.36639 -13.05806 -12.99232 -12.51720 -12.43089 -12.15295 -12.10943 -11.73592 -11.56858 -11.44187 -11.14600 -11.11462 -11.01487 -10.99368 -10.78404 -10.18784 -9.81549 -9.73858 -9.29995 -9.21726 -8.70043 -8.42867 -7.69373 -7.01070 -6.69568 -6.32842 -4.38963 1.06879 1.65745 1.79191 2.04663 2.30728 2.57980 3.16628 3.24389 3.28602 3.40645 3.57095 4.05544 4.23973 4.31328 4.61629 4.67196 5.04883 5.14505 5.19405 5.24447 5.25082 5.32808 5.39765 5.48434 5.55416 5.58791 5.67586 5.76083 5.81036 5.84479 6.08948 6.14122 6.23289 6.33896 6.58147 6.65329 6.82050 6.88497 6.89967 6.92753 7.20537 7.32106 7.59404 7.82396 8.61886 9.25385 10.78319 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003326 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.072150 B = 8415.811265 C = 9873.119990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.142 3.858 4 H 0.117 0.883 5 C -0.166 4.166 6 N -0.679 5.679 7 C 0.565 3.435 8 S -0.631 6.631 9 N -0.618 5.618 10 C 0.126 3.874 11 C -0.054 4.054 12 C -0.134 4.134 13 C -0.093 4.093 14 C -0.131 4.131 15 C -0.068 4.068 16 S -0.170 6.170 17 C 0.077 3.923 18 C -0.520 4.520 19 H 0.068 0.932 20 C 0.069 3.931 21 N -0.887 5.887 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.396 0.604 35 H 0.407 0.593 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -13.676 -13.340 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.038 3.962 4 H 0.134 0.866 5 C -0.224 4.224 6 N -0.308 5.308 7 C 0.206 3.794 8 S -0.503 6.503 9 N -0.242 5.242 10 C 0.026 3.974 11 C -0.077 4.077 12 C -0.157 4.157 13 C -0.114 4.114 14 C -0.155 4.155 15 C -0.184 4.184 16 S 0.077 5.923 17 C -0.069 4.069 18 C -0.560 4.560 19 H 0.086 0.914 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.246 0.754 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.446 -14.099 -14.034 21.241 hybrid contribution 0.100 0.187 2.197 2.207 sum -7.346 -13.913 -11.837 19.689 Atomic orbital electron populations 1.21793 0.95195 1.01826 1.02363 1.21888 0.96643 0.95121 1.03412 1.21507 0.96250 0.92552 0.85920 0.86570 1.22186 0.94211 1.04126 1.01924 1.45127 1.67312 1.03352 1.15021 1.22341 0.79836 0.85933 0.91295 1.93353 1.72411 1.63019 1.21506 1.42213 1.64738 1.08250 1.09004 1.16744 1.02072 0.80285 0.98280 1.21005 0.94974 0.95600 0.96138 1.20847 1.02489 0.93176 0.99168 1.21100 0.96783 0.99693 0.93810 1.21195 1.00887 0.92898 1.00557 1.21897 1.00713 0.96360 0.99450 1.85095 1.61158 1.23376 1.22677 1.21380 1.00212 0.90583 0.94754 1.20630 1.33507 0.95156 1.06695 0.91414 1.24949 0.95921 0.94647 0.98090 1.69950 1.44898 1.01915 1.35681 0.86271 0.79755 0.79111 0.81386 1.19447 1.20556 1.20593 0.92918 0.92125 0.92410 0.89650 0.91472 0.90462 0.92826 0.91159 0.76725 0.75423 0.84610 0.85916 0.85964 0.84680 0.93577 0.93666 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.80 37.16 0.36 -0.56 16 2 C -0.13 -0.77 5.47 -26.73 -0.15 -0.91 16 3 C 0.14 1.21 2.34 -67.93 -0.16 1.05 16 4 H 0.12 1.22 6.82 -51.93 -0.35 0.86 16 5 C -0.17 -1.51 9.43 37.16 0.35 -1.16 16 6 N -0.68 -6.39 4.53 -55.52 -0.25 -6.64 16 7 C 0.56 7.53 7.71 -86.92 -0.67 6.86 16 8 S -0.63 -10.63 24.09 -107.50 -2.59 -13.22 16 9 N -0.62 -8.53 4.85 -11.24 -0.05 -8.59 16 10 C 0.13 2.07 5.85 -83.43 -0.49 1.58 16 11 C -0.05 -0.84 7.88 -39.42 -0.31 -1.15 16 12 C -0.13 -1.93 10.04 -39.56 -0.40 -2.33 16 13 C -0.09 -1.42 10.04 -39.57 -0.40 -1.82 16 14 C -0.13 -2.37 9.36 -39.39 -0.37 -2.73 16 15 C -0.07 -1.27 6.12 -38.91 -0.24 -1.51 16 16 S -0.17 -3.50 20.92 -107.50 -2.25 -5.75 16 17 C 0.08 1.91 4.09 36.01 0.15 2.06 16 18 C -0.52 -14.01 9.13 -34.44 -0.31 -14.33 16 19 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 20 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 22 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H 0.05 0.34 7.75 -51.93 -0.40 -0.06 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.95 7.49 -51.92 -0.39 0.56 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 2.78 8.62 -40.82 -0.35 2.43 16 35 H 0.41 4.89 8.34 -40.82 -0.34 4.55 16 36 H 0.14 2.05 6.52 -52.49 -0.34 1.71 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.14 2.62 5.88 -52.49 -0.31 2.31 16 40 H 0.05 1.21 7.75 -51.92 -0.40 0.81 16 41 H 0.05 1.16 7.75 -51.92 -0.40 0.75 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -30.89 369.17 -12.81 -43.70 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.22 Total: 6.66 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.72 Total: -13.20 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.43 Total: -39.37 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -14.13 SS G_CDS: -4.84 Total: -18.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.89 -12.81 -43.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730953067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.182 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds