Wall clock time and date at job start Tue Mar 31 2020 14:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47018 * 305.00594 * 3 2 1 5 5 C 1.52995 * 109.46760 * 185.00383 * 3 2 1 6 6 N 1.46502 * 109.46952 * 65.00167 * 3 2 1 7 7 C 1.34776 * 119.99993 * 204.99548 * 6 3 2 8 8 S 1.71198 * 119.99801 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99570 * 180.02562 * 7 6 3 10 10 C 1.40140 * 119.99581 * 185.46868 * 9 7 6 11 11 C 1.38654 * 120.09846 * 44.33299 * 10 9 7 12 12 C 1.38253 * 120.00686 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.20919 * 359.97438 * 12 11 10 14 14 C 1.38213 * 120.20032 * 0.02562 * 13 12 11 15 15 C 1.38774 * 119.98738 * 359.97438 * 14 13 12 16 16 S 1.76202 * 120.10397 * 180.02562 * 15 14 13 17 17 C 1.81397 * 102.99722 * 359.97438 * 16 15 14 18 18 C 1.50700 * 109.47096 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00498 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99224 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00314 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47094 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47181 * 119.99890 * 22 20 18 25 25 H 1.48501 * 109.47419 * 239.99650 * 22 20 18 26 26 H 1.09001 * 109.46734 * 299.99716 * 1 2 3 27 27 H 1.08995 * 109.47468 * 59.99490 * 1 2 3 28 28 H 1.09004 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46734 * 240.00284 * 2 1 3 30 30 H 1.08995 * 109.47468 * 120.00510 * 2 1 3 31 31 H 1.09009 * 109.46910 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47527 * 299.99899 * 5 3 2 33 33 H 1.08999 * 109.47662 * 60.00784 * 5 3 2 34 34 H 0.97004 * 119.99725 * 25.00531 * 6 3 2 35 35 H 0.96998 * 120.00300 * 5.47299 * 9 7 6 36 36 H 1.07999 * 119.99542 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.89827 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.89982 * 179.72385 * 13 12 11 39 39 H 1.07991 * 120.00771 * 179.97438 * 14 13 12 40 40 H 1.09007 * 109.47129 * 299.99623 * 17 16 15 41 41 H 1.09000 * 109.47550 * 59.99750 * 17 16 15 42 42 H 0.97001 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 1.6525 2.0974 1.2519 7 6 1.5258 3.4384 1.2997 8 16 1.8170 4.3762 -0.1026 9 7 1.1697 4.0409 2.4515 10 6 0.9263 5.4208 2.4743 11 6 0.1736 6.0107 1.4703 12 6 -0.0649 7.3723 1.4943 13 6 0.4446 8.1500 2.5181 14 6 1.1960 7.5710 3.5232 15 6 1.4405 6.2050 3.5072 16 16 2.3974 5.4634 4.7875 17 6 2.8162 6.8716 5.8516 18 6 3.6478 6.3931 7.0137 19 1 3.8989 5.3465 7.1034 20 6 4.0882 7.2914 7.9626 21 7 3.7827 8.5659 7.8530 22 14 5.1184 6.6983 9.4033 23 1 5.3204 5.2309 9.2965 24 1 6.4362 7.3826 9.3845 25 1 4.4171 7.0097 10.6748 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9282 2.4719 -0.1254 32 1 3.9995 0.9051 0.7159 33 1 3.8531 0.9570 -1.0573 34 1 1.4872 1.5660 2.0463 35 1 1.0821 3.5194 3.2647 36 1 -0.2263 5.4065 0.6694 37 1 -0.6518 7.8299 0.7116 38 1 0.2589 9.2139 2.5295 39 1 1.5927 8.1813 4.3209 40 1 3.3818 7.6054 5.2773 41 1 1.9004 7.3299 6.2250 42 1 4.0928 9.1980 8.5203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730953067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:18 Heat of formation + Delta-G solvation = 11.816547 kcal Electronic energy + Delta-G solvation = -22156.696331 eV Core-core repulsion = 18966.768221 eV Total energy + Delta-G solvation = -3189.928110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16344 -39.64651 -37.34823 -35.37758 -33.88209 -32.19346 -31.07848 -30.65491 -30.03698 -25.96998 -25.29450 -24.52871 -23.76537 -23.24885 -22.06206 -19.90393 -19.29379 -18.57366 -17.99881 -17.23481 -16.88271 -16.47348 -16.37929 -15.83917 -15.40148 -15.02519 -14.87422 -14.75689 -14.67953 -14.43345 -14.28398 -14.27509 -13.78417 -13.22646 -13.04452 -12.80780 -12.71570 -12.65165 -12.49631 -12.32080 -12.30323 -11.95368 -11.81604 -11.68143 -11.64351 -11.05681 -10.90058 -10.84936 -10.55924 -9.62889 -8.97067 -8.38582 -8.33162 -8.26401 -6.53226 -0.11956 0.34687 0.56436 0.71538 0.91009 1.38183 1.38981 1.46617 1.52519 1.74983 2.32697 2.46225 2.77144 2.96897 3.69524 3.89149 4.01176 4.13201 4.15863 4.30360 4.46275 4.47383 4.49770 4.59631 4.71673 4.77033 4.82813 4.83269 4.88056 4.92279 5.01716 5.10686 5.15386 5.26797 5.32779 5.38601 5.39064 5.49857 5.53782 5.58391 5.78752 5.79512 6.05910 6.25962 6.53875 7.15851 8.73697 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003326 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.072150 B = 8415.811265 C = 9873.119990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.140 3.860 4 H 0.099 0.901 5 C -0.162 4.162 6 N -0.653 5.653 7 C 0.580 3.420 8 S -0.697 6.697 9 N -0.616 5.616 10 C 0.131 3.869 11 C -0.057 4.057 12 C -0.120 4.120 13 C -0.091 4.091 14 C -0.149 4.149 15 C -0.094 4.094 16 S -0.156 6.156 17 C 0.083 3.917 18 C -0.542 4.542 19 H 0.067 0.933 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.272 1.272 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.417 0.583 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -15.827 -13.796 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.037 3.963 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.281 5.281 7 C 0.218 3.782 8 S -0.570 6.570 9 N -0.242 5.242 10 C 0.031 3.969 11 C -0.080 4.080 12 C -0.142 4.142 13 C -0.111 4.111 14 C -0.174 4.174 15 C -0.210 4.210 16 S 0.090 5.910 17 C -0.065 4.065 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.184 4.184 21 N -0.559 5.559 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.197 1.197 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.253 0.747 35 H 0.257 0.743 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.019 -16.306 -14.504 23.250 hybrid contribution 0.184 0.798 2.193 2.341 sum -7.836 -15.508 -12.310 21.294 Atomic orbital electron populations 1.21796 0.95261 1.02479 1.01666 1.21854 0.96413 0.92830 1.04933 1.21644 0.96037 0.94039 0.84587 0.88349 1.22138 0.94269 1.02204 1.03404 1.45220 1.64660 1.01986 1.16271 1.21942 0.79481 0.86904 0.89892 1.93478 1.75199 1.64618 1.23675 1.42073 1.64994 1.07559 1.09544 1.16802 1.01372 0.81213 0.97533 1.21223 0.94671 0.96354 0.95741 1.21279 1.01159 0.92671 0.99087 1.21375 0.95663 1.01209 0.92894 1.21172 1.02208 0.92799 1.01203 1.21886 1.02236 0.96968 0.99915 1.84650 1.62536 1.20905 1.22955 1.20993 0.98627 0.91843 0.95028 1.20965 1.34103 0.95271 1.07723 0.91526 1.25900 0.96929 0.94689 1.00852 1.70059 1.45897 1.03115 1.36807 0.85212 0.78023 0.78874 0.77853 1.18663 1.19983 1.19685 0.93448 0.93031 0.91107 0.88083 0.89957 0.93937 0.91837 0.89335 0.74736 0.74292 0.83890 0.82375 0.83244 0.87032 0.96343 0.95728 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.80 71.98 0.71 -0.77 16 2 C -0.12 -1.05 5.47 30.59 0.17 -0.88 16 3 C 0.14 2.15 2.34 44.99 0.11 2.25 16 4 H 0.10 1.97 6.82 -2.39 -0.02 1.96 16 5 C -0.16 -2.70 9.43 71.98 0.68 -2.02 16 6 N -0.65 -11.15 4.53 -329.57 -1.49 -12.64 16 7 C 0.58 14.91 7.71 179.05 1.38 16.29 16 8 S -0.70 -23.42 24.09 -56.49 -1.36 -24.78 16 9 N -0.62 -16.49 4.85 -189.48 -0.92 -17.41 16 10 C 0.13 4.24 5.85 38.22 0.22 4.46 16 11 C -0.06 -1.69 7.88 22.37 0.18 -1.51 16 12 C -0.12 -3.21 10.04 22.29 0.22 -2.98 16 13 C -0.09 -2.69 10.04 22.28 0.22 -2.47 16 14 C -0.15 -5.56 9.36 22.39 0.21 -5.35 16 15 C -0.09 -3.58 6.12 22.71 0.14 -3.44 16 16 S -0.16 -6.58 20.92 -56.49 -1.18 -7.77 16 17 C 0.08 4.30 4.09 71.24 0.29 4.59 16 18 C -0.54 -29.98 9.13 25.60 0.23 -29.75 16 19 H 0.07 3.61 7.71 -2.91 -0.02 3.59 16 20 C 0.02 0.99 5.46 84.66 0.46 1.45 16 21 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 22 Si 0.98 42.45 29.54 68.60 2.03 44.47 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H 0.05 0.50 7.75 -2.39 -0.02 0.48 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 1.03 7.49 -2.38 -0.02 1.01 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.41 4.71 8.62 -92.71 -0.80 3.92 16 35 H 0.42 9.53 8.34 -92.71 -0.77 8.75 16 36 H 0.14 4.11 6.52 -2.91 -0.02 4.09 16 37 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.11 4.64 5.88 -2.92 -0.02 4.63 16 40 H 0.02 1.03 7.75 -2.39 -0.02 1.01 16 41 H 0.02 1.34 7.75 -2.39 -0.02 1.32 16 42 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.50 369.17 2.04 -67.46 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.53 Total: 23.54 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 5.22 Total: -20.13 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.13 Total: -82.79 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -30.00 SS G_CDS: -2.54 Total: -32.55 kcal Total: -69.50 2.04 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730953067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.278 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds