Wall clock time and date at job start Tue Mar 31 2020 14:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 N 1.46502 * 109.46700 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99239 * 179.97438 * 4 3 2 6 6 S 1.71202 * 120.00654 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99631 * 179.97438 * 5 4 3 8 8 C 1.40142 * 120.00037 * 183.38961 * 7 5 4 9 9 C 1.38645 * 120.09361 * 39.62599 * 8 7 5 10 10 C 1.38263 * 120.00469 * 179.72084 * 9 8 7 11 11 C 1.38299 * 120.20572 * 0.25415 * 10 9 8 12 12 C 1.38210 * 120.19796 * 0.02562 * 11 10 9 13 13 C 1.38767 * 119.99097 * 359.97438 * 12 11 10 14 14 S 1.76205 * 120.10155 * 179.97438 * 13 12 11 15 15 C 1.81399 * 103.00007 * 355.25490 * 14 13 12 16 16 H 1.09002 * 109.47149 * 55.20793 * 15 14 13 17 17 C 1.53003 * 109.47090 * 295.20970 * 15 14 13 18 18 C 1.50696 * 109.47309 * 175.21214 * 15 14 13 19 19 H 1.08001 * 119.99724 * 359.97438 * 18 15 14 20 20 C 1.37870 * 120.00292 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00281 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00035 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47140 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46805 * 119.99999 * 22 20 18 25 25 H 1.48500 * 109.47068 * 239.99904 * 22 20 18 26 26 H 1.09003 * 109.47125 * 60.00473 * 1 2 3 27 27 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47137 * 300.00360 * 1 2 3 29 29 H 1.08993 * 109.47137 * 239.99640 * 2 1 3 30 30 H 1.09003 * 109.47125 * 119.99526 * 2 1 3 31 31 H 1.08999 * 109.47191 * 59.99491 * 3 2 1 32 32 H 1.09003 * 109.46785 * 299.99735 * 3 2 1 33 33 H 0.96993 * 120.00015 * 0.02562 * 4 3 2 34 34 H 0.97003 * 120.00022 * 3.39715 * 7 5 4 35 35 H 1.08000 * 120.00249 * 359.97438 * 9 8 7 36 36 H 1.07993 * 119.89802 * 180.23502 * 10 9 8 37 37 H 1.08000 * 119.89604 * 179.97438 * 11 10 9 38 38 H 1.08005 * 120.00235 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47413 * 299.71102 * 17 15 14 40 40 H 1.08997 * 109.47294 * 59.71097 * 17 15 14 41 41 H 1.09008 * 109.47125 * 179.70710 * 17 15 14 42 42 H 0.96995 * 119.99971 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6097 0.0002 6 16 3.3229 4.0924 -0.0017 7 7 5.5266 2.6097 0.0013 8 6 6.2273 3.8213 0.0726 9 6 5.7740 4.8389 0.8981 10 6 6.4699 6.0314 0.9714 11 6 7.6158 6.2157 0.2193 12 6 8.0719 5.2091 -0.6107 13 6 7.3799 4.0090 -0.6907 14 16 7.9585 2.7240 -1.7484 15 6 9.3625 3.4964 -2.5985 16 1 10.0683 3.8785 -1.8610 17 6 8.8598 4.6500 -3.4688 18 6 10.0481 2.4736 -3.4673 19 1 9.6767 1.4602 -3.5040 20 6 11.1502 2.8313 -4.2144 21 7 11.6030 4.0653 -4.1694 22 14 12.0006 1.5632 -5.2908 23 1 11.3012 0.2592 -5.1662 24 1 11.9637 2.0108 -6.7062 25 1 13.4124 1.4118 -4.8561 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9900 0.6025 0.0006 34 1 6.0117 1.7711 -0.0474 35 1 4.8796 4.6987 1.4869 36 1 6.1175 6.8215 1.6178 37 1 8.1552 7.1494 0.2801 38 1 8.9669 5.3566 -1.1971 39 1 8.1579 4.2672 -4.2097 40 1 8.3594 5.3873 -2.8412 41 1 9.7041 5.1175 -3.9757 42 1 12.3781 4.3170 -4.6953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731318844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:42 Heat of formation + Delta-G solvation = 35.303160 kcal Electronic energy + Delta-G solvation = -22195.490845 eV Core-core repulsion = 19006.581191 eV Total energy + Delta-G solvation = -3188.909654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92271 -38.26563 -35.98441 -34.25504 -33.23725 -31.21681 -30.00482 -29.35989 -26.57088 -25.43526 -24.13030 -22.60723 -22.43839 -21.61846 -21.24079 -18.63088 -18.17649 -16.96374 -16.20032 -16.07500 -15.92268 -15.53040 -15.09502 -14.86166 -14.37914 -13.99754 -13.70540 -13.45479 -13.39923 -13.06759 -12.60269 -12.41809 -12.21276 -12.03378 -11.74679 -11.60507 -11.30816 -11.24846 -11.13271 -11.10519 -11.01118 -10.60317 -10.48834 -10.15063 -9.82589 -9.51045 -9.18378 -8.99987 -8.59544 -8.37702 -7.76204 -6.96851 -6.66458 -6.28580 -4.38425 1.04630 1.70717 1.81222 2.03981 2.33648 2.57117 3.15771 3.24097 3.28050 3.38741 3.57941 4.10752 4.23411 4.36730 4.55068 4.77810 5.03710 5.19706 5.23428 5.27064 5.34655 5.38488 5.48200 5.60557 5.69494 5.72607 5.79578 5.85653 6.05887 6.20483 6.37945 6.52083 6.61966 6.66126 6.68773 6.75261 6.84743 6.93693 7.20514 7.26309 7.36124 7.54730 7.70273 7.93967 8.60285 9.26244 10.77303 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.003381 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.439115 B = 8278.914588 C = 9954.522094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.124 3.876 4 N -0.685 5.685 5 C 0.560 3.440 6 S -0.630 6.630 7 N -0.614 5.614 8 C 0.120 3.880 9 C -0.058 4.058 10 C -0.136 4.136 11 C -0.096 4.096 12 C -0.133 4.133 13 C -0.065 4.065 14 S -0.180 6.180 15 C 0.104 3.896 16 H 0.052 0.948 17 C -0.149 4.149 18 C -0.512 4.512 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.884 5.884 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.398 0.602 34 H 0.408 0.592 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.039 0.961 40 H 0.027 0.973 41 H 0.096 0.904 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 -5.234 10.381 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.001 3.999 4 N -0.315 5.315 5 C 0.201 3.799 6 S -0.501 6.501 7 N -0.237 5.237 8 C 0.020 3.980 9 C -0.082 4.082 10 C -0.158 4.158 11 C -0.117 4.117 12 C -0.157 4.157 13 C -0.181 4.181 14 S 0.068 5.932 15 C -0.023 4.023 16 H 0.070 0.930 17 C -0.208 4.208 18 C -0.552 4.552 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.207 1.207 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.247 0.753 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.444 -5.345 10.062 19.191 hybrid contribution 1.907 -0.894 -0.641 2.201 sum -13.537 -6.238 9.420 17.633 Atomic orbital electron populations 1.21647 0.93918 1.02274 1.02714 1.21793 0.97548 0.95527 1.02834 1.21811 0.75731 0.97472 1.04906 1.45001 1.08827 1.05503 1.72145 1.22274 0.84818 0.92469 0.80370 1.93331 1.67116 1.16058 1.73622 1.42208 1.02855 1.09825 1.68820 1.16818 0.93572 0.86686 1.00897 1.21275 0.98242 0.92340 0.96337 1.20859 0.95949 0.97420 1.01595 1.21114 0.96241 0.98459 0.95884 1.21321 1.01274 0.92378 1.00770 1.21785 0.97890 0.99280 0.99170 1.85028 1.41904 1.20367 1.45931 1.21075 0.88564 0.96494 0.96197 0.93026 1.22218 1.01536 0.97424 0.99666 1.20629 1.12519 0.95751 1.26287 0.91566 1.24884 0.96327 0.95786 0.96290 1.69867 1.24461 1.17052 1.40757 0.86296 0.79245 0.81172 0.79953 1.19552 1.20638 1.20653 0.92017 0.92078 0.92104 0.91172 0.91308 0.89489 0.89443 0.76568 0.75338 0.83631 0.85992 0.86081 0.84124 0.94143 0.95448 0.88606 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.40 16 2 C -0.14 -0.78 6.05 -26.73 -0.16 -0.94 16 3 C 0.12 1.04 5.13 -4.04 -0.02 1.02 16 4 N -0.69 -6.54 5.56 -62.03 -0.34 -6.89 16 5 C 0.56 7.66 7.79 -86.92 -0.68 6.98 16 6 S -0.63 -10.83 24.75 -107.50 -2.66 -13.49 16 7 N -0.61 -8.69 4.93 -11.24 -0.06 -8.75 16 8 C 0.12 2.02 6.01 -83.43 -0.50 1.52 16 9 C -0.06 -0.93 7.85 -39.42 -0.31 -1.24 16 10 C -0.14 -2.01 10.04 -39.55 -0.40 -2.41 16 11 C -0.10 -1.50 10.04 -39.57 -0.40 -1.90 16 12 C -0.13 -2.42 7.85 -39.40 -0.31 -2.73 16 13 C -0.07 -1.22 6.02 -38.91 -0.23 -1.46 16 14 S -0.18 -3.69 20.25 -107.50 -2.18 -5.87 16 15 C 0.10 2.49 2.00 -27.88 -0.06 2.43 16 16 H 0.05 1.31 7.24 -51.92 -0.38 0.94 16 17 C -0.15 -3.49 8.43 37.16 0.31 -3.18 16 18 C -0.51 -13.41 8.58 -34.44 -0.30 -13.71 16 19 H 0.07 1.75 7.71 -52.49 -0.40 1.34 16 20 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 21 N -0.88 -23.66 11.32 55.43 0.63 -23.03 16 22 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.79 7.99 -51.93 -0.42 0.38 16 32 H 0.09 0.87 7.99 -51.93 -0.41 0.46 16 33 H 0.40 2.74 8.49 -40.82 -0.35 2.40 16 34 H 0.41 5.05 8.17 -40.82 -0.33 4.72 16 35 H 0.15 2.31 5.90 -40.22 -0.24 2.08 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.14 2.75 4.69 -52.48 -0.25 2.50 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.03 0.58 5.29 -51.93 -0.27 0.31 16 41 H 0.10 2.42 6.08 -51.92 -0.32 2.10 16 42 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -30.10 361.51 -12.84 -42.93 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.88 Total: 8.61 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.77 Total: -14.23 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.23 Total: -38.66 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -14.53 SS G_CDS: -4.84 Total: -19.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.10 -12.84 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731318844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.236 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds