Wall clock time and date at job start Tue Mar 31 2020 14:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 N 1.46502 * 109.46700 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99239 * 179.97438 * 4 3 2 6 6 S 1.71202 * 120.00654 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99631 * 179.97438 * 5 4 3 8 8 C 1.40142 * 120.00037 * 183.38961 * 7 5 4 9 9 C 1.38645 * 120.09361 * 39.62599 * 8 7 5 10 10 C 1.38263 * 120.00469 * 179.72084 * 9 8 7 11 11 C 1.38299 * 120.20572 * 0.25415 * 10 9 8 12 12 C 1.38210 * 120.19796 * 0.02562 * 11 10 9 13 13 C 1.38767 * 119.99097 * 359.97438 * 12 11 10 14 14 S 1.76205 * 120.10155 * 179.97438 * 13 12 11 15 15 C 1.81399 * 103.00007 * 355.25490 * 14 13 12 16 16 H 1.09002 * 109.47149 * 55.20793 * 15 14 13 17 17 C 1.53003 * 109.47090 * 295.20970 * 15 14 13 18 18 C 1.50696 * 109.47309 * 175.21214 * 15 14 13 19 19 H 1.08001 * 119.99724 * 359.97438 * 18 15 14 20 20 C 1.37870 * 120.00292 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00281 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00035 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47140 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46805 * 119.99999 * 22 20 18 25 25 H 1.48500 * 109.47068 * 239.99904 * 22 20 18 26 26 H 1.09003 * 109.47125 * 60.00473 * 1 2 3 27 27 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47137 * 300.00360 * 1 2 3 29 29 H 1.08993 * 109.47137 * 239.99640 * 2 1 3 30 30 H 1.09003 * 109.47125 * 119.99526 * 2 1 3 31 31 H 1.08999 * 109.47191 * 59.99491 * 3 2 1 32 32 H 1.09003 * 109.46785 * 299.99735 * 3 2 1 33 33 H 0.96993 * 120.00015 * 0.02562 * 4 3 2 34 34 H 0.97003 * 120.00022 * 3.39715 * 7 5 4 35 35 H 1.08000 * 120.00249 * 359.97438 * 9 8 7 36 36 H 1.07993 * 119.89802 * 180.23502 * 10 9 8 37 37 H 1.08000 * 119.89604 * 179.97438 * 11 10 9 38 38 H 1.08005 * 120.00235 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47413 * 299.71102 * 17 15 14 40 40 H 1.08997 * 109.47294 * 59.71097 * 17 15 14 41 41 H 1.09008 * 109.47125 * 179.70710 * 17 15 14 42 42 H 0.96995 * 119.99971 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6097 0.0002 6 16 3.3229 4.0924 -0.0017 7 7 5.5266 2.6097 0.0013 8 6 6.2273 3.8213 0.0726 9 6 5.7740 4.8389 0.8981 10 6 6.4699 6.0314 0.9714 11 6 7.6158 6.2157 0.2193 12 6 8.0719 5.2091 -0.6107 13 6 7.3799 4.0090 -0.6907 14 16 7.9585 2.7240 -1.7484 15 6 9.3625 3.4964 -2.5985 16 1 10.0683 3.8785 -1.8610 17 6 8.8598 4.6500 -3.4688 18 6 10.0481 2.4736 -3.4673 19 1 9.6767 1.4602 -3.5040 20 6 11.1502 2.8313 -4.2144 21 7 11.6030 4.0653 -4.1694 22 14 12.0006 1.5632 -5.2908 23 1 11.3012 0.2592 -5.1662 24 1 11.9637 2.0108 -6.7062 25 1 13.4124 1.4118 -4.8561 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9900 0.6025 0.0006 34 1 6.0117 1.7711 -0.0474 35 1 4.8796 4.6987 1.4869 36 1 6.1175 6.8215 1.6178 37 1 8.1552 7.1494 0.2801 38 1 8.9669 5.3566 -1.1971 39 1 8.1579 4.2672 -4.2097 40 1 8.3594 5.3873 -2.8412 41 1 9.7041 5.1175 -3.9757 42 1 12.3781 4.3170 -4.6953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731318844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:41 Heat of formation + Delta-G solvation = 20.253062 kcal Electronic energy + Delta-G solvation = -22196.143466 eV Core-core repulsion = 19006.581191 eV Total energy + Delta-G solvation = -3189.562275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12122 -39.35305 -37.00787 -36.13650 -33.99722 -32.89343 -31.59613 -30.55372 -27.46828 -27.30901 -25.22537 -23.86776 -23.53314 -23.16668 -22.37160 -19.87570 -19.30439 -18.50664 -17.88335 -17.10488 -16.99892 -16.82655 -16.40070 -16.02398 -15.86489 -15.34429 -15.04539 -14.81792 -14.43651 -14.10318 -13.99668 -13.79126 -13.26849 -13.22199 -12.92912 -12.90621 -12.83342 -12.61467 -12.46957 -12.38978 -12.20523 -12.08012 -11.86753 -11.72069 -11.37500 -10.93451 -10.79691 -10.62998 -10.48108 -9.60061 -9.06471 -8.30179 -8.27560 -8.20047 -6.43713 -0.14816 0.39718 0.58094 0.76632 0.88220 1.38906 1.41148 1.44394 1.52817 1.80606 2.35746 2.44116 2.81524 3.03234 3.78568 3.93638 4.03682 4.18857 4.23244 4.35583 4.50901 4.54794 4.57131 4.64772 4.68520 4.75257 4.78384 4.84682 4.88724 5.06105 5.13440 5.18198 5.21010 5.29617 5.37950 5.41728 5.51723 5.55391 5.62508 5.72318 5.78033 5.98590 6.08484 6.22648 6.58853 7.24218 8.79063 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.003381 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.439115 B = 8278.914588 C = 9954.522094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.123 3.877 4 N -0.659 5.659 5 C 0.574 3.426 6 S -0.697 6.697 7 N -0.611 5.611 8 C 0.123 3.877 9 C -0.063 4.063 10 C -0.123 4.123 11 C -0.094 4.094 12 C -0.149 4.149 13 C -0.088 4.088 14 S -0.173 6.173 15 C 0.101 3.899 16 H 0.028 0.972 17 C -0.134 4.134 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.028 3.972 21 N -0.908 5.908 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.275 1.275 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.417 0.583 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.030 0.970 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 -6.365 11.290 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.000 4.000 4 N -0.287 5.287 5 C 0.211 3.789 6 S -0.569 6.569 7 N -0.236 5.236 8 C 0.023 3.977 9 C -0.086 4.086 10 C -0.145 4.145 11 C -0.114 4.114 12 C -0.174 4.174 13 C -0.204 4.204 14 S 0.074 5.926 15 C -0.027 4.027 16 H 0.046 0.954 17 C -0.193 4.193 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.174 4.174 21 N -0.546 5.546 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.200 1.200 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.256 0.744 34 H 0.258 0.742 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.454 -6.521 10.986 20.832 hybrid contribution 2.101 -0.547 -0.807 2.317 sum -14.353 -7.068 10.179 18.963 Atomic orbital electron populations 1.21663 0.93471 1.02966 1.02528 1.21752 0.97767 0.93333 1.03831 1.21944 0.74572 0.99468 1.03969 1.45073 1.09494 1.05025 1.69102 1.21905 0.84339 0.92579 0.80057 1.93455 1.67921 1.18875 1.76633 1.42065 1.02953 1.09562 1.69039 1.16884 0.92935 0.87692 1.00225 1.21466 0.98321 0.92626 0.96206 1.21268 0.94857 0.97635 1.00782 1.21391 0.96513 0.98703 0.94825 1.21295 1.01022 0.93297 1.01788 1.21767 0.99314 0.99109 1.00215 1.84669 1.40301 1.20960 1.46663 1.20795 0.89740 0.96364 0.95773 0.95442 1.22030 1.00372 0.97561 0.99356 1.20888 1.13271 0.95929 1.27101 0.92226 1.25668 0.96871 0.97538 0.97371 1.69970 1.24792 1.18480 1.41334 0.85355 0.78253 0.78949 0.78245 1.19185 1.20217 1.20041 0.92541 0.90921 0.92058 0.90552 0.89875 0.89918 0.90895 0.74440 0.74244 0.83251 0.82694 0.83343 0.86098 0.95103 0.93976 0.90740 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.13 -1.13 6.05 30.60 0.19 -0.94 16 3 C 0.12 1.87 5.13 86.38 0.44 2.31 16 4 N -0.66 -11.25 5.56 -350.15 -1.95 -13.20 16 5 C 0.57 14.93 7.79 179.05 1.39 16.33 16 6 S -0.70 -23.57 24.75 -56.49 -1.40 -24.97 16 7 N -0.61 -16.56 4.93 -189.49 -0.93 -17.49 16 8 C 0.12 4.01 6.01 38.22 0.23 4.24 16 9 C -0.06 -1.90 7.85 22.37 0.18 -1.73 16 10 C -0.12 -3.36 10.04 22.29 0.22 -3.14 16 11 C -0.09 -2.77 10.04 22.28 0.22 -2.54 16 12 C -0.15 -5.45 7.85 22.39 0.18 -5.27 16 13 C -0.09 -3.30 6.02 22.70 0.14 -3.16 16 14 S -0.17 -7.14 20.25 -56.49 -1.14 -8.28 16 15 C 0.10 4.99 2.00 29.85 0.06 5.05 16 16 H 0.03 1.47 7.24 -2.39 -0.02 1.45 16 17 C -0.13 -6.45 8.43 71.98 0.61 -5.85 16 18 C -0.53 -28.44 8.58 25.60 0.22 -28.22 16 19 H 0.06 3.19 7.71 -2.91 -0.02 3.16 16 20 C 0.03 1.45 5.30 84.65 0.45 1.90 16 21 N -0.91 -49.52 11.32 21.45 0.24 -49.28 16 22 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 1.40 7.99 -2.39 -0.02 1.39 16 32 H 0.07 1.40 7.99 -2.39 -0.02 1.38 16 33 H 0.42 4.56 8.49 -92.71 -0.79 3.77 16 34 H 0.42 9.71 8.17 -92.71 -0.76 8.95 16 35 H 0.15 4.52 5.90 -10.71 -0.06 4.46 16 36 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.12 4.87 4.69 -2.91 -0.01 4.86 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.85 5.29 -2.39 -0.01 1.84 16 41 H 0.07 3.89 6.08 -2.38 -0.01 3.88 16 42 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -66.07 361.51 1.54 -64.53 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.54 Total: 26.51 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.24 Total: -21.55 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.64 Total: -79.97 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -30.71 SS G_CDS: -2.54 Total: -33.25 kcal Total: -66.07 1.54 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731318844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.781 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds