Wall clock time and date at job start Tue Mar 31 2020 14:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47159 * 2 1 4 4 N 1.46493 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00209 * 179.72413 * 4 3 2 6 6 S 1.71205 * 119.99782 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00416 * 179.97438 * 5 4 3 8 8 C 1.40133 * 120.00016 * 175.38781 * 7 5 4 9 9 C 1.38650 * 120.09899 * 46.66331 * 8 7 5 10 10 C 1.38254 * 120.00532 * 179.76921 * 9 8 7 11 11 C 1.38297 * 120.20916 * 0.50401 * 10 9 8 12 12 C 1.38208 * 120.19833 * 359.74910 * 11 10 9 13 13 C 1.38773 * 119.99118 * 359.97438 * 12 11 10 14 14 S 1.76198 * 120.10689 * 179.97438 * 13 12 11 15 15 C 1.81404 * 102.99687 * 357.80263 * 14 13 12 16 16 H 1.09004 * 109.46934 * 48.38297 * 15 14 13 17 17 C 1.53003 * 109.46893 * 168.38452 * 15 14 13 18 18 C 1.50697 * 109.46929 * 288.38360 * 15 14 13 19 19 H 1.07999 * 120.00392 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99753 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00449 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99844 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.47007 * 89.99657 * 22 20 18 24 24 H 1.48498 * 109.46804 * 209.99365 * 22 20 18 25 25 H 1.48492 * 109.47170 * 329.99758 * 22 20 18 26 26 H 1.09002 * 109.47077 * 299.99495 * 1 2 3 27 27 H 1.08992 * 109.47153 * 60.00132 * 1 2 3 28 28 H 1.09001 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47077 * 240.00505 * 2 1 3 30 30 H 1.09003 * 109.47256 * 120.00337 * 2 1 3 31 31 H 1.09002 * 109.46713 * 60.00282 * 3 2 1 32 32 H 1.09000 * 109.47169 * 300.00808 * 3 2 1 33 33 H 0.97001 * 120.00443 * 0.02562 * 4 3 2 34 34 H 0.97005 * 119.99790 * 355.38965 * 7 5 4 35 35 H 1.07999 * 119.99514 * 359.97438 * 9 8 7 36 36 H 1.07996 * 119.90006 * 180.27237 * 10 9 8 37 37 H 1.07998 * 119.89727 * 179.77080 * 11 10 9 38 38 H 1.07999 * 120.00442 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.46826 * 187.12453 * 17 15 14 40 40 H 1.08998 * 109.47058 * 307.11688 * 17 15 14 41 41 H 1.08994 * 109.47163 * 67.12136 * 17 15 14 42 42 H 0.96989 * 120.00629 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0063 6 16 3.3228 4.0924 -0.0122 7 7 5.5266 2.6098 -0.0064 8 6 6.2272 3.8190 -0.1099 9 6 5.8619 4.9035 0.6729 10 6 6.5575 6.0941 0.5727 11 6 7.6118 6.2115 -0.3146 12 6 7.9799 5.1375 -1.1028 13 6 7.2911 3.9368 -1.0048 14 16 7.7574 2.5659 -2.0087 15 6 9.1068 3.2390 -3.0171 16 1 9.8166 3.7590 -2.3737 17 6 9.8192 2.0964 -3.7437 18 6 8.5447 4.2044 -4.0285 19 1 7.4820 4.3939 -4.0617 20 6 9.3872 4.8451 -4.9122 21 7 10.6812 4.6141 -4.8722 22 14 8.6904 6.0414 -6.1664 23 1 8.6648 7.4081 -5.5859 24 1 9.5428 6.0359 -7.3823 25 1 7.3097 5.6312 -6.5278 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9900 0.6025 -0.0013 34 1 6.0117 1.7728 0.0652 35 1 5.0360 4.8171 1.3635 36 1 6.2743 6.9364 1.1864 37 1 8.1493 7.1450 -0.3914 38 1 8.8035 5.2328 -1.7949 39 1 10.7050 2.4828 -4.2478 40 1 10.1151 1.3352 -3.0218 41 1 9.1452 1.6573 -4.4791 42 1 11.2739 5.0651 -5.4935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731318845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:44 Heat of formation + Delta-G solvation = 32.103416 kcal Electronic energy + Delta-G solvation = -22396.149988 eV Core-core repulsion = 19207.101583 eV Total energy + Delta-G solvation = -3189.048405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80193 -38.15318 -35.87432 -34.19924 -33.17300 -30.70736 -30.27059 -29.26632 -26.51177 -25.41602 -24.01634 -22.61536 -22.31728 -21.73957 -20.97782 -18.45241 -17.97731 -16.68266 -16.41196 -16.04471 -15.80899 -15.43284 -15.09513 -14.81981 -14.26855 -13.86242 -13.51618 -13.41721 -13.33661 -12.97425 -12.80667 -12.38456 -12.09314 -11.81699 -11.63048 -11.56786 -11.25597 -11.24929 -11.03515 -11.01247 -10.86197 -10.55252 -10.41609 -10.20367 -9.67994 -9.45520 -9.09947 -9.03369 -8.54991 -8.29510 -7.69831 -6.91404 -6.65739 -6.18546 -4.31816 1.19456 1.77680 1.94093 2.11938 2.44087 2.67303 3.22972 3.29838 3.34487 3.45854 3.58821 4.24178 4.30954 4.41015 4.58625 4.81482 5.08895 5.23430 5.27588 5.37791 5.46029 5.52971 5.60005 5.64854 5.73439 5.79143 5.91179 5.99955 6.16609 6.35319 6.47650 6.54916 6.62638 6.67526 6.75939 6.82122 7.00228 7.10878 7.23060 7.27993 7.50137 7.51417 7.75189 7.94559 8.70651 9.34111 10.81898 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.003608 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.279101 B = 7758.250112 C = 8356.991230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.125 3.875 4 N -0.687 5.687 5 C 0.562 3.438 6 S -0.631 6.631 7 N -0.615 5.615 8 C 0.113 3.887 9 C -0.057 4.057 10 C -0.137 4.137 11 C -0.097 4.097 12 C -0.115 4.115 13 C -0.049 4.049 14 S -0.198 6.198 15 C 0.099 3.901 16 H 0.053 0.947 17 C -0.124 4.124 18 C -0.520 4.520 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.888 5.888 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.271 1.271 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.397 0.603 34 H 0.405 0.595 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.019 0.981 41 H 0.039 0.961 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 -8.337 11.676 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.001 3.999 4 N -0.316 5.316 5 C 0.203 3.797 6 S -0.502 6.502 7 N -0.239 5.239 8 C 0.014 3.986 9 C -0.080 4.080 10 C -0.160 4.160 11 C -0.118 4.118 12 C -0.139 4.139 13 C -0.165 4.165 14 S 0.049 5.951 15 C -0.028 4.028 16 H 0.071 0.929 17 C -0.184 4.184 18 C -0.559 4.559 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.526 5.526 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.196 1.196 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.233 0.767 34 H 0.243 0.757 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.117 0.883 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.845 -8.512 11.437 18.535 hybrid contribution 1.081 0.353 -0.878 1.437 sum -10.763 -8.158 10.559 17.143 Atomic orbital electron populations 1.21646 0.93957 1.02231 1.02721 1.21789 0.97518 0.95583 1.02768 1.21792 0.75836 0.97383 1.04874 1.44977 1.08748 1.05476 1.72415 1.22277 0.84870 0.92375 0.80163 1.93342 1.67132 1.16207 1.73567 1.42134 1.02776 1.09959 1.69005 1.16822 0.95311 0.86085 1.00383 1.21151 0.97343 0.91772 0.97709 1.20867 0.96874 0.97389 1.00850 1.21142 0.96851 0.98257 0.95549 1.21461 1.01311 0.91227 0.99910 1.21530 0.98780 0.98880 0.97312 1.84527 1.49266 1.17323 1.43965 1.21116 0.89801 0.96655 0.95201 0.92943 1.21652 1.02206 0.95733 0.98806 1.21251 0.94409 1.23845 1.16364 0.91407 1.24943 0.94751 0.96536 0.97051 1.69859 1.02609 1.42497 1.37594 0.86478 0.79251 0.81263 0.80584 1.20268 1.21053 1.19580 0.92118 0.92011 0.92112 0.91186 0.91370 0.89583 0.89460 0.76678 0.75663 0.84097 0.86175 0.86187 0.83147 0.88347 0.96152 0.94150 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.14 -0.84 6.05 -26.73 -0.16 -1.00 16 3 C 0.12 1.12 5.13 -4.05 -0.02 1.10 16 4 N -0.69 -6.92 5.56 -62.03 -0.34 -7.26 16 5 C 0.56 8.05 7.85 -86.92 -0.68 7.37 16 6 S -0.63 -11.43 24.93 -107.50 -2.68 -14.11 16 7 N -0.61 -8.91 4.80 -11.24 -0.05 -8.97 16 8 C 0.11 1.98 5.91 -83.43 -0.49 1.49 16 9 C -0.06 -0.95 7.88 -39.42 -0.31 -1.26 16 10 C -0.14 -2.20 10.04 -39.55 -0.40 -2.59 16 11 C -0.10 -1.67 10.04 -39.57 -0.40 -2.07 16 12 C -0.11 -2.29 8.88 -39.39 -0.35 -2.64 16 13 C -0.05 -0.97 6.09 -38.91 -0.24 -1.20 16 14 S -0.20 -4.00 20.36 -107.50 -2.19 -6.19 16 15 C 0.10 2.33 2.00 -27.88 -0.06 2.27 16 16 H 0.05 1.30 6.91 -51.92 -0.36 0.94 16 17 C -0.12 -2.80 8.87 37.16 0.33 -2.47 16 18 C -0.52 -13.46 7.06 -34.44 -0.24 -13.70 16 19 H 0.07 1.86 7.71 -52.49 -0.40 1.45 16 20 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 21 N -0.89 -23.56 11.40 55.43 0.63 -22.92 16 22 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.83 8.00 -51.93 -0.42 0.42 16 32 H 0.09 0.94 7.98 -51.93 -0.41 0.53 16 33 H 0.40 2.89 8.49 -40.82 -0.35 2.54 16 34 H 0.41 4.92 8.44 -40.82 -0.34 4.58 16 35 H 0.14 2.34 6.21 -47.46 -0.29 2.04 16 36 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.15 3.34 5.04 -52.49 -0.26 3.07 16 39 H 0.10 2.39 6.30 -51.93 -0.33 2.07 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.91 8.13 -51.93 -0.42 0.48 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -29.97 365.42 -13.01 -42.98 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.11 Total: 8.56 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.75 Total: -13.39 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.23 Total: -39.15 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -15.44 SS G_CDS: -4.87 Total: -20.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.97 -13.01 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731318845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.080 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds