Wall clock time and date at job start Tue Mar 31 2020 14:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47159 * 2 1 4 4 N 1.46493 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00209 * 179.72413 * 4 3 2 6 6 S 1.71205 * 119.99782 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00416 * 179.97438 * 5 4 3 8 8 C 1.40133 * 120.00016 * 175.38781 * 7 5 4 9 9 C 1.38650 * 120.09899 * 46.66331 * 8 7 5 10 10 C 1.38254 * 120.00532 * 179.76921 * 9 8 7 11 11 C 1.38297 * 120.20916 * 0.50401 * 10 9 8 12 12 C 1.38208 * 120.19833 * 359.74910 * 11 10 9 13 13 C 1.38773 * 119.99118 * 359.97438 * 12 11 10 14 14 S 1.76198 * 120.10689 * 179.97438 * 13 12 11 15 15 C 1.81404 * 102.99687 * 357.80263 * 14 13 12 16 16 H 1.09004 * 109.46934 * 48.38297 * 15 14 13 17 17 C 1.53003 * 109.46893 * 168.38452 * 15 14 13 18 18 C 1.50697 * 109.46929 * 288.38360 * 15 14 13 19 19 H 1.07999 * 120.00392 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99753 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00449 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99844 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.47007 * 89.99657 * 22 20 18 24 24 H 1.48498 * 109.46804 * 209.99365 * 22 20 18 25 25 H 1.48492 * 109.47170 * 329.99758 * 22 20 18 26 26 H 1.09002 * 109.47077 * 299.99495 * 1 2 3 27 27 H 1.08992 * 109.47153 * 60.00132 * 1 2 3 28 28 H 1.09001 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47077 * 240.00505 * 2 1 3 30 30 H 1.09003 * 109.47256 * 120.00337 * 2 1 3 31 31 H 1.09002 * 109.46713 * 60.00282 * 3 2 1 32 32 H 1.09000 * 109.47169 * 300.00808 * 3 2 1 33 33 H 0.97001 * 120.00443 * 0.02562 * 4 3 2 34 34 H 0.97005 * 119.99790 * 355.38965 * 7 5 4 35 35 H 1.07999 * 119.99514 * 359.97438 * 9 8 7 36 36 H 1.07996 * 119.90006 * 180.27237 * 10 9 8 37 37 H 1.07998 * 119.89727 * 179.77080 * 11 10 9 38 38 H 1.07999 * 120.00442 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.46826 * 187.12453 * 17 15 14 40 40 H 1.08998 * 109.47058 * 307.11688 * 17 15 14 41 41 H 1.08994 * 109.47163 * 67.12136 * 17 15 14 42 42 H 0.96989 * 120.00629 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0063 6 16 3.3228 4.0924 -0.0122 7 7 5.5266 2.6098 -0.0064 8 6 6.2272 3.8190 -0.1099 9 6 5.8619 4.9035 0.6729 10 6 6.5575 6.0941 0.5727 11 6 7.6118 6.2115 -0.3146 12 6 7.9799 5.1375 -1.1028 13 6 7.2911 3.9368 -1.0048 14 16 7.7574 2.5659 -2.0087 15 6 9.1068 3.2390 -3.0171 16 1 9.8166 3.7590 -2.3737 17 6 9.8192 2.0964 -3.7437 18 6 8.5447 4.2044 -4.0285 19 1 7.4820 4.3939 -4.0617 20 6 9.3872 4.8451 -4.9122 21 7 10.6812 4.6141 -4.8722 22 14 8.6904 6.0414 -6.1664 23 1 8.6648 7.4081 -5.5859 24 1 9.5428 6.0359 -7.3823 25 1 7.3097 5.6312 -6.5278 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9900 0.6025 -0.0013 34 1 6.0117 1.7728 0.0652 35 1 5.0360 4.8171 1.3635 36 1 6.2743 6.9364 1.1864 37 1 8.1493 7.1450 -0.3914 38 1 8.8035 5.2328 -1.7949 39 1 10.7050 2.4828 -4.2478 40 1 10.1151 1.3352 -3.0218 41 1 9.1452 1.6573 -4.4791 42 1 11.2739 5.0651 -5.4935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731318845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:44 Heat of formation + Delta-G solvation = 17.363112 kcal Electronic energy + Delta-G solvation = -22396.789176 eV Core-core repulsion = 19207.101583 eV Total energy + Delta-G solvation = -3189.687593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05914 -39.30343 -36.94422 -36.09119 -33.97376 -32.47093 -31.85520 -30.52311 -27.45087 -27.27177 -25.17374 -23.99921 -23.55566 -22.98618 -22.28477 -19.63467 -19.19751 -18.53052 -17.94139 -17.12916 -16.97485 -16.79596 -16.36906 -16.05912 -15.84937 -15.16263 -14.95136 -14.85853 -14.63085 -14.02023 -13.99052 -13.49177 -13.42364 -13.14871 -12.93818 -12.90727 -12.80253 -12.52913 -12.38308 -12.35042 -12.25601 -12.07535 -11.86553 -11.68616 -11.34673 -10.92829 -10.77456 -10.61371 -10.42696 -9.60450 -9.06431 -8.35724 -8.31881 -8.04226 -6.36280 -0.06575 0.44054 0.58417 0.82102 0.92602 1.36722 1.39768 1.48139 1.48911 1.80249 2.37526 2.46864 2.85559 3.07046 3.79585 4.03559 4.05028 4.23449 4.25133 4.38546 4.55872 4.58794 4.64159 4.64923 4.70581 4.76259 4.81289 4.85278 4.96803 5.10811 5.16649 5.21370 5.22299 5.32537 5.40136 5.46343 5.55040 5.59200 5.68910 5.74861 5.82103 6.01790 6.12859 6.26431 6.65689 7.30976 8.81551 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.003608 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.279101 B = 7758.250112 C = 8356.991230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.123 3.877 4 N -0.659 5.659 5 C 0.577 3.423 6 S -0.704 6.704 7 N -0.610 5.610 8 C 0.118 3.882 9 C -0.058 4.058 10 C -0.126 4.126 11 C -0.099 4.099 12 C -0.136 4.136 13 C -0.075 4.075 14 S -0.174 6.174 15 C 0.094 3.906 16 H 0.032 0.968 17 C -0.114 4.114 18 C -0.525 4.525 19 H 0.047 0.953 20 C 0.035 3.965 21 N -0.906 5.906 22 Si 0.946 3.054 23 H -0.274 1.274 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.417 0.583 34 H 0.418 0.582 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.034 0.966 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.085 -9.357 12.749 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.001 3.999 4 N -0.287 5.287 5 C 0.214 3.786 6 S -0.577 6.577 7 N -0.235 5.235 8 C 0.018 3.982 9 C -0.081 4.081 10 C -0.148 4.148 11 C -0.119 4.119 12 C -0.160 4.160 13 C -0.190 4.190 14 S 0.073 5.927 15 C -0.034 4.034 16 H 0.050 0.950 17 C -0.174 4.174 18 C -0.564 4.564 19 H 0.066 0.934 20 C -0.167 4.167 21 N -0.544 5.544 22 Si 0.772 3.228 23 H -0.200 1.200 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.259 0.741 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.023 -9.588 12.523 20.453 hybrid contribution 1.356 0.620 -1.108 1.858 sum -11.667 -8.968 11.414 18.623 Atomic orbital electron populations 1.21664 0.93536 1.02979 1.02470 1.21747 0.97714 0.93252 1.03875 1.21923 0.74706 0.99496 1.03817 1.45030 1.09399 1.04989 1.69293 1.21861 0.84457 0.92409 0.79825 1.93491 1.68108 1.19262 1.76832 1.41947 1.02770 1.09748 1.69065 1.16849 0.94602 0.87260 0.99526 1.21351 0.97281 0.91926 0.97586 1.21241 0.95507 0.98040 1.00029 1.21367 0.97280 0.98250 0.95046 1.21326 1.01311 0.92660 1.00725 1.21606 1.00237 0.98739 0.98457 1.84114 1.47889 1.17141 1.43595 1.20898 0.90862 0.96608 0.95052 0.94999 1.21494 1.01093 0.95823 0.98984 1.21268 0.93359 1.24678 1.17089 0.93436 1.25502 0.95048 0.97740 0.98435 1.69936 1.03206 1.43133 1.38164 0.85729 0.78317 0.79694 0.79092 1.19996 1.20207 1.20244 0.92062 0.92684 0.90833 0.90560 0.89711 0.90003 0.91191 0.74385 0.74110 0.83534 0.82902 0.84079 0.86053 0.90401 0.93799 0.94656 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.13 -1.19 6.05 30.60 0.19 -1.01 16 3 C 0.12 2.00 5.13 86.38 0.44 2.45 16 4 N -0.66 -11.74 5.56 -350.17 -1.95 -13.68 16 5 C 0.58 15.62 7.85 179.05 1.41 17.02 16 6 S -0.70 -25.17 24.93 -56.49 -1.41 -26.58 16 7 N -0.61 -16.69 4.80 -189.48 -0.91 -17.60 16 8 C 0.12 4.00 5.91 38.22 0.23 4.22 16 9 C -0.06 -1.88 7.88 22.37 0.18 -1.70 16 10 C -0.13 -3.79 10.04 22.29 0.22 -3.57 16 11 C -0.10 -3.31 10.04 22.28 0.22 -3.09 16 12 C -0.14 -5.49 8.88 22.39 0.20 -5.29 16 13 C -0.07 -2.93 6.09 22.71 0.14 -2.80 16 14 S -0.17 -6.99 20.36 -56.49 -1.15 -8.14 16 15 C 0.09 4.48 2.00 29.85 0.06 4.54 16 16 H 0.03 1.65 6.91 -2.39 -0.02 1.63 16 17 C -0.11 -5.18 8.87 71.98 0.64 -4.54 16 18 C -0.52 -27.78 7.06 25.60 0.18 -27.60 16 19 H 0.05 2.67 7.71 -2.91 -0.02 2.64 16 20 C 0.03 1.84 5.30 84.66 0.45 2.29 16 21 N -0.91 -48.80 11.40 21.45 0.24 -48.56 16 22 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.47 8.00 -2.39 -0.02 1.46 16 32 H 0.07 1.45 7.98 -2.39 -0.02 1.43 16 33 H 0.42 4.67 8.49 -92.71 -0.79 3.88 16 34 H 0.42 9.25 8.44 -92.70 -0.78 8.47 16 35 H 0.15 4.64 6.21 -6.11 -0.04 4.61 16 36 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.12 5.62 5.04 -2.91 -0.01 5.60 16 39 H 0.08 3.85 6.30 -2.39 -0.02 3.83 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 42 H 0.27 13.72 8.31 -92.72 -0.77 12.95 16 Total: -1.00 -65.84 365.42 1.57 -64.27 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.55 Total: 24.92 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.26 Total: -19.70 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.61 Total: -79.84 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -32.16 SS G_CDS: -2.56 Total: -34.72 kcal Total: -65.84 1.57 -64.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731318845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.629 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds