Wall clock time and date at job start Tue Mar 31 2020 14:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40000 * 120.46071 * 160.54325 * 3 2 1 5 5 C 1.38198 * 118.37084 * 179.75316 * 4 3 2 6 6 C 1.39518 * 119.20673 * 0.50327 * 5 4 3 7 7 C 1.47941 * 119.57021 * 179.75456 * 6 5 4 8 8 O 1.21557 * 120.00508 * 355.63383 * 7 6 5 9 9 N 1.34777 * 119.99912 * 175.63965 * 7 6 5 10 10 C 1.46500 * 120.00048 * 5.97002 * 9 7 6 11 11 C 1.50695 * 109.46928 * 276.65125 * 10 9 7 12 12 H 1.08001 * 120.00483 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99997 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99787 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00298 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46995 * 89.99691 * 15 13 11 17 17 H 1.48492 * 109.47374 * 209.99885 * 15 13 11 18 18 H 1.48506 * 109.46694 * 329.99951 * 15 13 11 19 19 C 1.39935 * 120.00184 * 185.96813 * 9 7 6 20 20 C 1.38870 * 120.04658 * 352.89481 * 19 9 7 21 21 C 1.38100 * 119.95343 * 180.29916 * 20 19 9 22 22 C 1.38481 * 120.04521 * 359.43794 * 21 20 19 23 23 F 1.35105 * 119.95399 * 180.28083 * 22 21 20 24 24 C 1.38478 * 120.09346 * 0.56135 * 22 21 20 25 25 C 1.38098 * 120.04862 * 359.71703 * 24 22 21 26 26 N 1.32832 * 120.85402 * 359.48328 * 6 5 4 27 27 C 1.31299 * 121.78756 * 0.27105 * 26 6 5 28 28 H 4.52944 * 13.94782 * 359.97438 * 4 2 1 29 29 H 1.08004 * 120.81112 * 0.03784 * 4 3 2 30 30 H 1.08005 * 120.39734 * 180.25659 * 5 4 3 31 31 H 1.08998 * 109.47191 * 36.64800 * 10 9 7 32 32 H 1.08996 * 109.47446 * 156.65073 * 10 9 7 33 33 H 0.96996 * 119.99676 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.02531 * 0.02562 * 20 19 9 35 35 H 1.08003 * 119.98139 * 179.71795 * 21 20 19 36 36 H 1.08001 * 119.97555 * 179.69720 * 24 22 21 37 37 H 1.08004 * 120.02533 * 179.97438 * 25 24 22 38 38 H 1.07996 * 119.64896 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3153 1.1388 -0.4020 5 6 4.6963 1.0937 -0.3802 6 6 5.3328 -0.0788 0.0281 7 6 6.8109 -0.1378 0.0492 8 8 7.4627 0.8020 -0.3625 9 7 7.4348 -1.2337 0.5248 10 6 6.6551 -2.4163 0.8987 11 6 6.1231 -2.2453 2.2982 12 1 6.3441 -1.3459 2.8539 13 6 5.3542 -3.2371 2.8694 14 7 5.0847 -4.3321 2.1926 15 14 4.6953 -3.0256 4.6045 16 1 3.3647 -2.3683 4.5520 17 1 4.5649 -4.3564 5.2502 18 1 5.6327 -2.1837 5.3906 19 6 8.8275 -1.2420 0.6616 20 6 9.5805 -0.1828 0.1723 21 6 10.9553 -0.1959 0.3027 22 6 11.5820 -1.2588 0.9314 23 9 12.9266 -1.2670 1.0630 24 6 10.8330 -2.3160 1.4200 25 6 9.4585 -2.3097 1.2866 26 7 4.6289 -1.1409 0.4032 27 6 3.3159 -1.1364 0.4014 28 1 -1.0499 -0.0010 -0.0001 29 1 2.7957 2.0318 -0.7169 30 1 5.2760 1.9544 -0.6796 31 1 5.8224 -2.5364 0.2057 32 1 7.2923 -3.2996 0.8576 33 1 4.5441 -5.0299 2.5946 34 1 9.0918 0.6486 -0.3140 35 1 11.5418 0.6255 -0.0817 36 1 11.3241 -3.1463 1.9056 37 1 8.8747 -3.1347 1.6675 38 1 2.7781 -2.0193 0.7137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732093420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:02 Heat of formation + Delta-G solvation = 79.675602 kcal Electronic energy + Delta-G solvation = -26281.180327 eV Core-core repulsion = 22392.537679 eV Total energy + Delta-G solvation = -3888.642648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.46108 -40.72821 -39.41820 -37.63468 -35.40793 -34.12508 -32.61101 -31.94684 -30.80860 -30.56539 -28.91510 -27.26746 -24.91107 -23.53817 -23.39632 -22.33453 -21.79428 -19.89668 -18.99509 -17.38108 -17.19521 -16.87515 -16.58391 -15.97680 -15.64983 -15.36678 -15.19334 -14.80350 -14.67709 -14.32531 -13.94928 -13.63941 -13.53788 -13.11639 -13.04087 -12.71477 -12.49899 -12.37524 -12.19322 -11.96611 -11.45032 -11.40673 -11.05575 -10.93780 -10.75466 -10.62041 -10.29934 -10.07578 -9.58947 -9.17944 -9.06544 -8.69147 -8.66768 -8.59453 -8.26468 -7.23136 -6.15284 -4.14926 0.54297 1.51001 1.58492 1.71129 2.68496 2.76695 3.20601 3.28669 3.30387 3.38462 3.46987 4.13305 4.17351 4.30821 4.36506 4.56545 4.75273 4.93343 4.99963 5.20728 5.23202 5.25619 5.29477 5.39186 5.74918 5.79625 5.81880 5.99674 6.01231 6.12677 6.24376 6.33985 6.58808 6.68985 6.71158 6.79547 6.81078 7.19824 7.42077 7.45219 7.66690 7.74068 7.97346 8.07621 8.20995 8.58800 8.83394 9.44312 10.92321 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.004565 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.576671 B = 6131.763559 C = 7991.630907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.139 4.139 3 C -0.033 4.033 4 C -0.074 4.074 5 C -0.116 4.116 6 C 0.084 3.916 7 C 0.570 3.430 8 O -0.539 6.539 9 N -0.513 5.513 10 C 0.220 3.780 11 C -0.500 4.500 12 H 0.053 0.947 13 C 0.073 3.927 14 N -0.885 5.885 15 Si 0.884 3.116 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.158 3.842 20 C -0.153 4.153 21 C -0.137 4.137 22 C 0.052 3.948 23 F -0.152 7.152 24 C -0.134 4.134 25 C -0.115 4.115 26 N -0.372 5.372 27 C 0.125 3.875 28 H 0.224 0.776 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.189 0.811 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 6.662 -5.193 8.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 C -0.035 4.035 4 C -0.100 4.100 5 C -0.136 4.136 6 C -0.054 4.054 7 C 0.361 3.639 8 O -0.420 6.420 9 N -0.229 5.229 10 C 0.102 3.898 11 C -0.539 4.539 12 H 0.071 0.929 13 C -0.130 4.130 14 N -0.524 5.524 15 Si 0.712 3.288 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.061 3.939 20 C -0.172 4.172 21 C -0.157 4.157 22 C 0.032 3.968 23 F -0.131 7.131 24 C -0.153 4.153 25 C -0.135 4.135 26 N -0.081 5.081 27 C -0.035 4.035 28 H 0.241 0.759 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.205 0.795 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.537 6.178 -5.124 8.172 hybrid contribution -0.919 0.598 1.126 1.572 sum -2.456 6.776 -3.997 8.241 Atomic orbital electron populations 1.24827 0.95660 0.99480 0.99478 1.19847 0.91728 1.01214 1.01189 1.17322 0.87738 0.96242 1.02233 1.21446 0.93438 0.97429 0.97654 1.21921 0.94356 0.98831 0.98533 1.21096 0.94085 0.91343 0.98841 1.18005 0.86485 0.81797 0.77654 1.90321 1.64437 1.38179 1.49060 1.46049 1.04435 1.16496 1.55952 1.20403 0.91377 0.79775 0.98259 1.21121 1.31534 1.03396 0.97892 0.92896 1.24717 0.95902 0.95085 0.97297 1.69912 1.38298 1.07158 1.37004 0.86718 0.79486 0.77530 0.85095 1.20681 1.21078 1.19984 1.18155 0.83284 0.95289 0.97160 1.22690 0.92584 1.00747 1.01202 1.21051 0.95282 0.97948 1.01410 1.17742 0.76669 0.97773 1.04601 1.91427 1.30237 1.96866 1.94587 1.20863 0.93821 0.98304 1.02361 1.21024 0.93536 0.99296 0.99682 1.68784 1.06734 1.25500 1.07084 1.23257 0.89926 0.96456 0.93822 0.75893 0.84402 0.83510 0.89316 0.94496 0.92746 0.79540 0.85338 0.85035 0.83224 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 19.25 29.55 0.57 -1.36 16 2 C -0.14 -1.89 13.28 -38.84 -0.52 -2.40 16 3 C -0.03 -0.49 5.75 -106.68 -0.61 -1.11 16 4 C -0.07 -1.00 9.89 -38.94 -0.39 -1.39 16 5 C -0.12 -1.75 9.61 -39.12 -0.38 -2.13 16 6 C 0.08 1.57 6.59 -82.98 -0.55 1.02 16 7 C 0.57 11.46 7.54 -12.29 -0.09 11.37 16 8 O -0.54 -10.66 12.72 5.32 0.07 -10.59 16 9 N -0.51 -10.75 2.70 -115.74 -0.31 -11.07 16 10 C 0.22 5.01 4.24 -5.20 -0.02 4.98 16 11 C -0.50 -12.34 7.59 -34.44 -0.26 -12.60 16 12 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -22.84 13.29 55.43 0.74 -22.10 16 15 Si 0.88 20.08 29.54 -169.99 -5.02 15.06 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.16 3.11 6.49 -83.69 -0.54 2.57 16 20 C -0.15 -2.78 9.05 -39.40 -0.36 -3.14 16 21 C -0.14 -2.24 10.02 -39.54 -0.40 -2.64 16 22 C 0.05 0.87 7.30 -39.40 -0.29 0.58 16 23 F -0.15 -2.46 17.27 2.25 0.04 -2.42 16 24 C -0.13 -2.22 10.02 -39.54 -0.40 -2.62 16 25 C -0.12 -2.14 9.16 -39.40 -0.36 -2.50 16 26 N -0.37 -7.36 4.75 -9.50 -0.05 -7.41 16 27 C 0.13 2.20 10.92 -17.15 -0.19 2.01 16 28 H 0.22 1.45 7.80 -54.09 -0.42 1.03 16 29 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.15 1.97 7.63 -52.48 -0.40 1.57 16 31 H 0.09 2.10 5.53 -51.93 -0.29 1.82 16 32 H 0.04 0.88 6.15 -51.93 -0.32 0.56 16 33 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.19 3.48 4.52 -56.25 -0.25 3.23 16 35 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.15 2.90 6.21 -52.48 -0.33 2.58 16 38 H 0.16 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -27.33 339.93 -7.53 -34.86 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.25 Total: 6.16 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -4.87 Total: -7.62 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.38 Total: -40.58 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.33 -7.53 -34.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732093420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.538 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds