Wall clock time and date at job start Tue Mar 31 2020 14:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40000 * 120.46071 * 160.54325 * 3 2 1 5 5 C 1.38198 * 118.37084 * 179.75316 * 4 3 2 6 6 C 1.39518 * 119.20673 * 0.50327 * 5 4 3 7 7 C 1.47941 * 119.57021 * 179.75456 * 6 5 4 8 8 O 1.21557 * 120.00508 * 355.63383 * 7 6 5 9 9 N 1.34777 * 119.99912 * 175.63965 * 7 6 5 10 10 C 1.46500 * 120.00048 * 5.97002 * 9 7 6 11 11 C 1.50695 * 109.46928 * 276.65125 * 10 9 7 12 12 H 1.08001 * 120.00483 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99997 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99787 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00298 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46995 * 89.99691 * 15 13 11 17 17 H 1.48492 * 109.47374 * 209.99885 * 15 13 11 18 18 H 1.48506 * 109.46694 * 329.99951 * 15 13 11 19 19 C 1.39935 * 120.00184 * 185.96813 * 9 7 6 20 20 C 1.38870 * 120.04658 * 352.89481 * 19 9 7 21 21 C 1.38100 * 119.95343 * 180.29916 * 20 19 9 22 22 C 1.38481 * 120.04521 * 359.43794 * 21 20 19 23 23 F 1.35105 * 119.95399 * 180.28083 * 22 21 20 24 24 C 1.38478 * 120.09346 * 0.56135 * 22 21 20 25 25 C 1.38098 * 120.04862 * 359.71703 * 24 22 21 26 26 N 1.32832 * 120.85402 * 359.48328 * 6 5 4 27 27 C 1.31299 * 121.78756 * 0.27105 * 26 6 5 28 28 H 4.52944 * 13.94782 * 359.97438 * 4 2 1 29 29 H 1.08004 * 120.81112 * 0.03784 * 4 3 2 30 30 H 1.08005 * 120.39734 * 180.25659 * 5 4 3 31 31 H 1.08998 * 109.47191 * 36.64800 * 10 9 7 32 32 H 1.08996 * 109.47446 * 156.65073 * 10 9 7 33 33 H 0.96996 * 119.99676 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.02531 * 0.02562 * 20 19 9 35 35 H 1.08003 * 119.98139 * 179.71795 * 21 20 19 36 36 H 1.08001 * 119.97555 * 179.69720 * 24 22 21 37 37 H 1.08004 * 120.02533 * 179.97438 * 25 24 22 38 38 H 1.07996 * 119.64896 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3153 1.1388 -0.4020 5 6 4.6963 1.0937 -0.3802 6 6 5.3328 -0.0788 0.0281 7 6 6.8109 -0.1378 0.0492 8 8 7.4627 0.8020 -0.3625 9 7 7.4348 -1.2337 0.5248 10 6 6.6551 -2.4163 0.8987 11 6 6.1231 -2.2453 2.2982 12 1 6.3441 -1.3459 2.8539 13 6 5.3542 -3.2371 2.8694 14 7 5.0847 -4.3321 2.1926 15 14 4.6953 -3.0256 4.6045 16 1 3.3647 -2.3683 4.5520 17 1 4.5649 -4.3564 5.2502 18 1 5.6327 -2.1837 5.3906 19 6 8.8275 -1.2420 0.6616 20 6 9.5805 -0.1828 0.1723 21 6 10.9553 -0.1959 0.3027 22 6 11.5820 -1.2588 0.9314 23 9 12.9266 -1.2670 1.0630 24 6 10.8330 -2.3160 1.4200 25 6 9.4585 -2.3097 1.2866 26 7 4.6289 -1.1409 0.4032 27 6 3.3159 -1.1364 0.4014 28 1 -1.0499 -0.0010 -0.0001 29 1 2.7957 2.0318 -0.7169 30 1 5.2760 1.9544 -0.6796 31 1 5.8224 -2.5364 0.2057 32 1 7.2923 -3.2996 0.8576 33 1 4.5441 -5.0299 2.5946 34 1 9.0918 0.6486 -0.3140 35 1 11.5418 0.6255 -0.0817 36 1 11.3241 -3.1463 1.9056 37 1 8.8747 -3.1347 1.6675 38 1 2.7781 -2.0193 0.7137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732093420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:02 Heat of formation + Delta-G solvation = 67.835658 kcal Electronic energy + Delta-G solvation = -26281.693745 eV Core-core repulsion = 22392.537679 eV Total energy + Delta-G solvation = -3889.156066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.78049 -42.16969 -40.75315 -39.06233 -36.98637 -35.22992 -34.48754 -33.16568 -32.13935 -31.84809 -30.36365 -29.00953 -26.23458 -25.24993 -24.68101 -23.77439 -23.20363 -21.32744 -20.02014 -18.83452 -18.62656 -18.60529 -18.16764 -17.29959 -16.92354 -16.60009 -16.47145 -16.43223 -16.26697 -15.77656 -15.38964 -14.99121 -14.87110 -14.51353 -14.35985 -14.20790 -14.09144 -13.78647 -13.56600 -13.45773 -13.04816 -12.84568 -12.64743 -12.49994 -12.20410 -12.08776 -11.88270 -11.68409 -10.85816 -10.73123 -10.63224 -10.49876 -10.04362 -9.80751 -9.76051 -8.75140 -8.07980 -6.13148 -0.71080 0.18936 0.31613 0.32506 1.36824 1.40444 1.44373 1.49508 1.74147 1.93859 2.23340 2.43985 2.75920 2.99517 3.07853 3.26393 3.32386 3.38642 3.67457 3.85617 3.90483 3.97587 4.06921 4.23454 4.33844 4.40498 4.52478 4.74154 4.78867 4.94124 5.00477 5.12137 5.13868 5.25075 5.28636 5.31936 5.43999 5.59656 5.75960 5.83117 6.11847 6.20486 6.34177 6.53295 6.79974 6.90963 7.12364 7.48467 8.98599 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.004565 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.576671 B = 6131.763559 C = 7991.630907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.206 4.206 3 C -0.016 4.016 4 C -0.063 4.063 5 C -0.102 4.102 6 C 0.050 3.950 7 C 0.564 3.436 8 O -0.542 6.542 9 N -0.523 5.523 10 C 0.239 3.761 11 C -0.496 4.496 12 H 0.032 0.968 13 C 0.041 3.959 14 N -0.908 5.908 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.132 3.868 20 C -0.158 4.158 21 C -0.127 4.127 22 C 0.054 3.946 23 F -0.145 7.145 24 C -0.126 4.126 25 C -0.129 4.129 26 N -0.406 5.406 27 C 0.101 3.899 28 H 0.268 0.732 29 H 0.179 0.821 30 H 0.166 0.834 31 H 0.080 0.920 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.185 0.815 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 8.456 -5.450 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.207 4.207 3 C -0.018 4.018 4 C -0.088 4.088 5 C -0.123 4.123 6 C -0.087 4.087 7 C 0.355 3.645 8 O -0.424 6.424 9 N -0.240 5.240 10 C 0.120 3.880 11 C -0.535 4.535 12 H 0.051 0.949 13 C -0.160 4.160 14 N -0.548 5.548 15 Si 0.758 3.242 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.207 1.207 19 C 0.036 3.964 20 C -0.178 4.178 21 C -0.146 4.146 22 C 0.034 3.966 23 F -0.124 7.124 24 C -0.145 4.145 25 C -0.149 4.149 26 N -0.115 5.115 27 C -0.059 4.059 28 H 0.284 0.716 29 H 0.197 0.803 30 H 0.184 0.816 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.201 0.799 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.662 7.982 -5.381 9.987 hybrid contribution -0.672 0.122 1.144 1.333 sum -3.334 8.104 -4.237 9.733 Atomic orbital electron populations 1.25868 0.96335 0.96027 0.95386 1.19946 0.91951 1.04365 1.04405 1.17406 0.89060 0.95446 0.99925 1.21867 0.92637 0.98191 0.96099 1.22142 0.95294 0.97931 0.96918 1.21087 0.93332 0.92717 1.01524 1.18347 0.87397 0.81477 0.77239 1.90295 1.64814 1.37962 1.49281 1.45986 1.05018 1.16328 1.56708 1.19992 0.90786 0.80080 0.97188 1.21053 1.31450 1.02402 0.98603 0.94949 1.25170 0.96157 0.94952 0.99690 1.69982 1.39124 1.07680 1.38045 0.85989 0.78818 0.77346 0.82060 1.20349 1.20602 1.20653 1.18481 0.83007 0.96462 0.98416 1.22651 0.93367 1.00207 1.01554 1.21305 0.94569 0.98519 1.00183 1.17771 0.76929 0.97670 1.04245 1.91449 1.29662 1.96821 1.94501 1.21058 0.92892 0.99032 1.01539 1.20947 0.94453 0.98884 1.00615 1.68504 1.08013 1.26824 1.08196 1.23176 0.89487 0.97569 0.95684 0.71612 0.80342 0.81622 0.90292 0.96144 0.92735 0.79921 0.82367 0.82660 0.84835 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 19.25 74.32 1.43 -0.69 16 2 C -0.21 -5.13 13.28 30.01 0.40 -4.74 16 3 C -0.02 -0.47 5.75 -21.20 -0.12 -0.59 16 4 C -0.06 -1.58 9.89 22.69 0.22 -1.35 16 5 C -0.10 -3.02 9.61 22.57 0.22 -2.80 16 6 C 0.05 1.94 6.59 41.87 0.28 2.21 16 7 C 0.56 23.52 7.54 86.81 0.65 24.17 16 8 O -0.54 -21.78 12.72 -3.90 -0.05 -21.83 16 9 N -0.52 -23.08 2.70 -638.38 -1.72 -24.81 16 10 C 0.24 11.54 4.24 85.63 0.36 11.91 16 11 C -0.50 -25.65 7.59 25.60 0.19 -25.45 16 12 H 0.03 1.77 7.81 -2.91 -0.02 1.75 16 13 C 0.04 2.10 5.46 84.66 0.46 2.56 16 14 N -0.91 -48.51 13.29 21.45 0.28 -48.23 16 15 Si 0.93 42.08 29.54 68.60 2.03 44.10 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C 0.13 5.39 6.49 38.15 0.25 5.64 16 20 C -0.16 -5.77 9.05 22.39 0.20 -5.57 16 21 C -0.13 -3.93 10.02 22.29 0.22 -3.71 16 22 C 0.05 1.70 7.30 22.39 0.16 1.86 16 23 F -0.15 -4.35 17.27 44.97 0.78 -3.58 16 24 C -0.13 -4.10 10.02 22.29 0.22 -3.87 16 25 C -0.13 -4.94 9.16 22.39 0.21 -4.73 16 26 N -0.41 -16.87 4.75 -183.96 -0.87 -17.74 16 27 C 0.10 3.69 10.92 85.18 0.93 4.62 16 28 H 0.27 1.90 7.80 -4.42 -0.03 1.87 16 29 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.17 4.17 7.63 -2.91 -0.02 4.15 16 31 H 0.08 4.01 5.53 -2.39 -0.01 4.00 16 32 H 0.02 1.05 6.15 -2.39 -0.01 1.03 16 33 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.18 6.85 4.52 -62.52 -0.28 6.56 16 35 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.13 5.52 6.21 -2.91 -0.02 5.50 16 38 H 0.15 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -61.47 339.93 7.58 -53.88 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.85 Total: 18.71 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.29 Total: -0.51 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.31 Total: -90.77 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -61.47 7.58 -53.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732093420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.719 kcal (2) G-P(sol) polarization free energy of solvation -61.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds