Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48506 * 109.46876 * 269.99560 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99720 * 3 2 1 6 6 H 1.48504 * 109.47306 * 150.00098 * 3 2 1 7 7 C 1.38992 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37312 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.36486 * 126.06732 * 180.02562 * 9 7 2 11 11 C 1.35710 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40491 * 126.08786 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00286 * 179.97438 * 12 11 10 14 14 O 1.21545 * 119.99309 * 359.97438 * 13 12 11 15 15 C 1.48117 * 120.00132 * 180.02562 * 13 12 11 16 16 C 1.39964 * 120.89552 * 359.97377 * 15 13 12 17 17 C 1.38046 * 119.13479 * 180.02562 * 16 15 13 18 18 N 1.31850 * 120.98082 * 359.73752 * 17 16 15 19 19 C 1.32243 * 121.97826 * 0.53342 * 18 17 16 20 20 N 1.39830 * 119.62368 * 179.74608 * 19 18 17 21 21 C 1.35847 * 126.10427 * 359.73098 * 20 19 18 22 22 C 1.35277 * 107.61431 * 179.97438 * 21 20 19 23 23 C 1.39963 * 107.96905 * 359.97438 * 22 21 20 24 24 N 1.30818 * 108.36940 * 0.23118 * 23 22 21 25 25 C 1.38899 * 120.74679 * 359.47400 * 19 18 17 26 26 C 1.40673 * 107.82348 * 0.23822 * 11 10 9 27 27 N 1.30899 * 108.38795 * 359.58853 * 26 11 10 28 28 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 29 29 H 1.08001 * 126.24323 * 0.03716 * 10 9 7 30 30 H 0.96999 * 120.00156 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.43140 * 0.02562 * 16 15 13 32 32 H 1.07996 * 119.50559 * 180.02562 * 17 16 15 33 33 H 1.07995 * 126.19060 * 0.02562 * 21 20 19 34 34 H 1.07994 * 126.01890 * 179.97438 * 22 21 20 35 35 H 1.08002 * 125.81291 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.52549 * 180.23672 * 25 19 18 37 37 H 1.08001 * 125.80825 * 179.75882 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0464 -1.4002 5 1 1.4443 2.6528 0.7000 6 1 3.5445 1.4403 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3214 -2.3928 0.0005 10 6 1.8750 -3.6403 0.0015 11 6 0.8577 -4.5385 0.0006 12 7 0.9887 -5.9373 0.0006 13 6 -0.1105 -6.7172 0.0001 14 8 -1.2152 -6.2103 0.0001 15 6 0.0277 -8.1919 0.0007 16 6 1.2906 -8.7954 0.0012 17 6 1.3771 -10.1732 0.0012 18 7 0.2915 -10.9214 0.0059 19 6 -0.9218 -10.3952 0.0003 20 7 -2.0395 -11.2354 0.0003 21 6 -2.0199 -12.5937 0.0005 22 6 -3.3032 -13.0216 0.0010 23 6 -4.1340 -11.8952 0.0017 24 7 -3.3795 -10.8265 -0.0033 25 6 -1.0983 -9.0175 0.0002 26 6 -0.3514 -3.8196 -0.0066 27 7 -0.0715 -2.5409 -0.0009 28 1 -0.4850 0.8401 -0.0004 29 1 2.9302 -3.8706 0.0030 30 1 1.8704 -6.3419 0.0010 31 1 2.1857 -8.1911 0.0016 32 1 2.3485 -10.6451 0.0020 33 1 -1.1392 -13.2187 0.0010 34 1 -3.6294 -14.0511 0.0008 35 1 -5.2139 -11.9064 0.0019 36 1 -2.0908 -8.5916 -0.0006 37 1 -1.3422 -4.2495 -0.0128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739707913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = 186.316727 kcal Electronic energy + Delta-G solvation = -24925.410330 eV Core-core repulsion = 21093.604701 eV Total energy + Delta-G solvation = -3831.805629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80444 -40.56300 -39.73223 -38.44217 -34.50921 -33.94803 -33.23345 -32.73834 -30.65720 -30.28810 -29.64003 -27.95086 -25.50983 -24.54073 -24.10225 -22.18348 -21.14694 -21.02140 -20.34057 -19.52658 -18.63247 -17.62678 -17.14534 -16.30671 -15.82433 -15.81444 -15.51481 -15.20902 -15.02333 -14.77499 -14.45290 -14.09069 -13.84225 -13.76773 -13.51727 -13.18337 -13.05384 -12.94280 -12.31130 -11.73513 -11.51657 -11.31268 -11.08816 -11.02556 -10.75396 -10.57293 -10.35085 -10.23902 -10.08293 -9.46729 -9.42812 -9.24110 -8.88452 -8.57246 -8.13388 -6.79720 -6.61424 -4.28931 0.26924 0.60853 1.74392 1.83698 2.50357 2.81777 2.99751 3.01279 3.07205 3.26733 3.48891 3.75166 3.79679 3.99976 4.22109 4.36705 4.41443 4.61973 4.62377 4.76641 4.78718 4.94160 4.96779 5.17972 5.34329 5.42817 5.54613 5.64305 5.78896 6.05291 6.17120 6.24796 6.36882 6.77281 6.79562 6.87534 6.99492 7.08211 7.15645 7.56575 7.78826 8.02031 8.17897 8.50582 8.69950 9.30292 9.59189 10.34325 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.034672 B = 0.002192 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.368604 B =12773.156914 C =13570.680081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.082 4.082 11 C -0.065 4.065 12 N -0.607 5.607 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.045 4.045 16 C -0.161 4.161 17 C 0.132 3.868 18 N -0.499 5.499 19 C 0.365 3.635 20 N -0.326 5.326 21 C 0.078 3.922 22 C -0.267 4.267 23 C 0.062 3.938 24 N -0.278 5.278 25 C -0.110 4.110 26 C -0.028 4.028 27 N -0.260 5.260 28 H 0.276 0.724 29 H 0.147 0.853 30 H 0.397 0.603 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.156 0.844 35 H 0.194 0.806 36 H 0.162 0.838 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 -21.995 -0.008 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.454 4.454 8 H 0.135 0.865 9 N 0.094 4.906 10 C -0.233 4.233 11 C -0.171 4.171 12 N -0.249 5.249 13 C 0.320 3.680 14 O -0.396 6.396 15 C -0.057 4.057 16 C -0.182 4.182 17 C -0.026 4.026 18 N -0.213 5.213 19 C 0.138 3.862 20 N -0.104 5.104 21 C -0.064 4.064 22 C -0.295 4.295 23 C -0.127 4.127 24 N -0.096 5.096 25 C -0.133 4.133 26 C -0.204 4.204 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.232 0.768 31 H 0.165 0.835 32 H 0.191 0.809 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.211 0.789 36 H 0.180 0.820 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.008 -19.836 0.003 19.862 hybrid contribution 1.231 -0.545 -0.006 1.346 sum 2.239 -20.381 -0.003 20.503 Atomic orbital electron populations 1.70213 1.06165 1.28151 1.34804 1.25670 0.95734 1.00369 0.95435 0.85809 0.79386 0.79836 0.79019 1.19535 1.20035 1.18762 1.19901 0.91711 0.80493 1.53329 0.86488 1.44584 1.04103 1.03346 1.38604 1.21245 0.96814 0.85308 1.19942 1.17218 0.94511 0.80718 1.24647 1.42314 1.07894 1.04793 1.69894 1.17781 0.84956 0.85041 0.80185 1.90711 1.25486 1.73875 1.49515 1.20391 0.93159 0.94554 0.97586 1.22393 0.97800 0.96598 1.01435 1.22442 0.95682 0.90026 0.94437 1.66696 0.97216 1.41835 1.15591 1.17512 0.84282 0.86628 0.97784 1.45793 1.03872 1.04288 1.56422 1.22913 1.00191 0.84001 0.99246 1.21670 0.91573 1.00525 1.15748 1.24211 1.00716 0.89904 0.97822 1.77604 0.84634 1.23346 1.24048 1.21708 1.01628 0.90787 0.99156 1.24152 0.98054 0.90755 1.07424 1.78288 0.90051 1.14987 1.25748 0.91335 0.83536 0.76832 0.83455 0.80947 0.80044 0.82620 0.78945 0.82025 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.22 11.81 55.50 0.66 -20.56 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 3 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 8 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 9 N -0.14 -3.76 3.74 -11.41 -0.04 -3.80 16 10 C -0.08 -1.87 11.49 -16.39 -0.19 -2.05 16 11 C -0.07 -1.47 6.90 -83.87 -0.58 -2.05 16 12 N -0.61 -10.42 5.42 -10.78 -0.06 -10.47 16 13 C 0.54 9.46 7.77 -12.20 -0.09 9.36 16 14 O -0.52 -11.27 13.59 5.33 0.07 -11.20 16 15 C -0.05 -0.62 5.91 -104.68 -0.62 -1.24 16 16 C -0.16 -1.55 9.61 -39.01 -0.37 -1.93 16 17 C 0.13 1.15 11.17 -17.61 -0.20 0.95 16 18 N -0.50 -5.62 9.83 -12.34 -0.12 -5.74 16 19 C 0.36 4.81 7.55 -154.43 -1.17 3.65 16 20 N -0.33 -4.18 3.81 -12.13 -0.05 -4.22 16 21 C 0.08 0.77 11.10 -16.83 -0.19 0.58 16 22 C -0.27 -2.23 10.80 -39.99 -0.43 -2.67 16 23 C 0.06 0.60 12.02 -17.34 -0.21 0.39 16 24 N -0.28 -3.67 11.83 30.64 0.36 -3.31 16 25 C -0.11 -1.58 9.27 -38.82 -0.36 -1.94 16 26 C -0.03 -0.74 10.85 -17.03 -0.18 -0.92 16 27 N -0.26 -7.49 10.39 30.80 0.32 -7.17 16 28 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 30 H 0.40 4.99 6.96 -40.82 -0.28 4.70 16 31 H 0.15 0.97 6.53 -52.49 -0.34 0.63 16 32 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.18 1.36 8.05 -52.49 -0.42 0.94 16 34 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 2.59 7.37 -52.48 -0.39 2.20 16 37 H 0.18 4.57 5.92 -52.49 -0.31 4.26 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -35.58 334.66 -6.66 -42.24 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -2.98 Total: 10.92 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -4.84 Total: -5.31 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 1.07 Total: -55.28 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.58 -6.66 -42.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739707913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.558 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds