Wall clock time and date at job start Tue Mar 31 2020 13:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48506 * 109.46876 * 269.99560 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99720 * 3 2 1 6 6 H 1.48504 * 109.47306 * 150.00098 * 3 2 1 7 7 C 1.38992 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37312 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.36486 * 126.06732 * 180.02562 * 9 7 2 11 11 C 1.35710 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40491 * 126.08786 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00286 * 179.97438 * 12 11 10 14 14 O 1.21545 * 119.99309 * 359.97438 * 13 12 11 15 15 C 1.48117 * 120.00132 * 180.02562 * 13 12 11 16 16 C 1.39964 * 120.89552 * 359.97377 * 15 13 12 17 17 C 1.38046 * 119.13479 * 180.02562 * 16 15 13 18 18 N 1.31850 * 120.98082 * 359.73752 * 17 16 15 19 19 C 1.32243 * 121.97826 * 0.53342 * 18 17 16 20 20 N 1.39830 * 119.62368 * 179.74608 * 19 18 17 21 21 C 1.35847 * 126.10427 * 359.73098 * 20 19 18 22 22 C 1.35277 * 107.61431 * 179.97438 * 21 20 19 23 23 C 1.39963 * 107.96905 * 359.97438 * 22 21 20 24 24 N 1.30818 * 108.36940 * 0.23118 * 23 22 21 25 25 C 1.38899 * 120.74679 * 359.47400 * 19 18 17 26 26 C 1.40673 * 107.82348 * 0.23822 * 11 10 9 27 27 N 1.30899 * 108.38795 * 359.58853 * 26 11 10 28 28 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 29 29 H 1.08001 * 126.24323 * 0.03716 * 10 9 7 30 30 H 0.96999 * 120.00156 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.43140 * 0.02562 * 16 15 13 32 32 H 1.07996 * 119.50559 * 180.02562 * 17 16 15 33 33 H 1.07995 * 126.19060 * 0.02562 * 21 20 19 34 34 H 1.07994 * 126.01890 * 179.97438 * 22 21 20 35 35 H 1.08002 * 125.81291 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.52549 * 180.23672 * 25 19 18 37 37 H 1.08001 * 125.80825 * 179.75882 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0464 -1.4002 5 1 1.4443 2.6528 0.7000 6 1 3.5445 1.4403 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3214 -2.3928 0.0005 10 6 1.8750 -3.6403 0.0015 11 6 0.8577 -4.5385 0.0006 12 7 0.9887 -5.9373 0.0006 13 6 -0.1105 -6.7172 0.0001 14 8 -1.2152 -6.2103 0.0001 15 6 0.0277 -8.1919 0.0007 16 6 1.2906 -8.7954 0.0012 17 6 1.3771 -10.1732 0.0012 18 7 0.2915 -10.9214 0.0059 19 6 -0.9218 -10.3952 0.0003 20 7 -2.0395 -11.2354 0.0003 21 6 -2.0199 -12.5937 0.0005 22 6 -3.3032 -13.0216 0.0010 23 6 -4.1340 -11.8952 0.0017 24 7 -3.3795 -10.8265 -0.0033 25 6 -1.0983 -9.0175 0.0002 26 6 -0.3514 -3.8196 -0.0066 27 7 -0.0715 -2.5409 -0.0009 28 1 -0.4850 0.8401 -0.0004 29 1 2.9302 -3.8706 0.0030 30 1 1.8704 -6.3419 0.0010 31 1 2.1857 -8.1911 0.0016 32 1 2.3485 -10.6451 0.0020 33 1 -1.1392 -13.2187 0.0010 34 1 -3.6294 -14.0511 0.0008 35 1 -5.2139 -11.9064 0.0019 36 1 -2.0908 -8.5916 -0.0006 37 1 -1.3422 -4.2495 -0.0128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739707913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:08 Heat of formation + Delta-G solvation = 161.535247 kcal Electronic energy + Delta-G solvation = -24926.484935 eV Core-core repulsion = 21093.604701 eV Total energy + Delta-G solvation = -3832.880234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62609 -41.89579 -41.16952 -39.91462 -36.11755 -35.25366 -34.61743 -33.76892 -32.25993 -31.44393 -30.47227 -29.69865 -27.13753 -25.82023 -25.05776 -23.28135 -22.81178 -21.94632 -21.53710 -21.21752 -19.78268 -19.22838 -18.24079 -17.53207 -17.33838 -16.84654 -16.73122 -16.49847 -16.20880 -16.11655 -15.65668 -15.20146 -15.18228 -15.05401 -14.77508 -14.55948 -14.43003 -13.70320 -13.49802 -13.38774 -13.17570 -12.93176 -12.87788 -12.09330 -11.96454 -11.85032 -11.58745 -11.34070 -11.14914 -11.05363 -10.84938 -10.77666 -10.25914 -10.13519 -9.36991 -8.59357 -8.48345 -6.26353 -0.64955 -0.33895 0.95213 1.05071 1.25655 1.40031 1.57680 1.59678 1.81883 1.86833 1.87521 2.17846 2.41462 2.73223 2.82554 3.08525 3.22270 3.36411 3.49881 3.76510 3.84989 4.04740 4.06312 4.41751 4.42575 4.52632 4.60711 4.66228 4.73049 4.86927 4.98429 5.02610 5.04962 5.23678 5.28648 5.35254 5.57238 5.93672 6.00365 6.25539 6.30643 6.57636 6.70454 6.74584 7.19685 7.44095 7.64056 8.50917 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.034672 B = 0.002192 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.368604 B =12773.156914 C =13570.680081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.241 1.241 7 C -0.351 4.351 8 H 0.146 0.854 9 N -0.166 5.166 10 C -0.072 4.072 11 C -0.050 4.050 12 N -0.594 5.594 13 C 0.537 3.463 14 O -0.568 6.568 15 C -0.059 4.059 16 C -0.141 4.141 17 C 0.148 3.852 18 N -0.497 5.497 19 C 0.356 3.644 20 N -0.345 5.345 21 C 0.066 3.934 22 C -0.257 4.257 23 C 0.064 3.936 24 N -0.335 5.335 25 C -0.135 4.135 26 C -0.060 4.060 27 N -0.311 5.311 28 H 0.276 0.724 29 H 0.196 0.804 30 H 0.424 0.576 31 H 0.187 0.813 32 H 0.227 0.773 33 H 0.205 0.795 34 H 0.191 0.809 35 H 0.224 0.776 36 H 0.129 0.871 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -24.657 0.020 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.164 1.164 7 C -0.482 4.482 8 H 0.163 0.837 9 N 0.066 4.934 10 C -0.222 4.222 11 C -0.156 4.156 12 N -0.239 5.239 13 C 0.325 3.675 14 O -0.448 6.448 15 C -0.071 4.071 16 C -0.161 4.161 17 C -0.010 4.010 18 N -0.211 5.211 19 C 0.129 3.871 20 N -0.123 5.123 21 C -0.074 4.074 22 C -0.285 4.285 23 C -0.124 4.124 24 N -0.153 5.153 25 C -0.159 4.159 26 C -0.235 4.235 27 N -0.143 5.143 28 H 0.086 0.914 29 H 0.213 0.787 30 H 0.263 0.737 31 H 0.204 0.796 32 H 0.243 0.757 33 H 0.221 0.779 34 H 0.208 0.792 35 H 0.240 0.760 36 H 0.147 0.853 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.888 -22.576 0.031 23.099 hybrid contribution 0.008 -0.024 -0.018 0.030 sum 4.896 -22.600 0.014 23.124 Atomic orbital electron populations 1.70406 1.08526 1.29151 1.37208 1.26929 0.96465 1.04519 0.94131 0.84578 0.78352 0.73954 0.79232 1.18910 1.20443 1.16434 1.20671 0.93082 0.80721 1.53759 0.83717 1.44885 1.03579 1.04982 1.40003 1.22042 0.98923 0.83864 1.17404 1.17261 0.92957 0.83154 1.22248 1.42124 1.09340 1.02556 1.69931 1.18458 0.84130 0.86829 0.78127 1.90695 1.27588 1.75293 1.51193 1.20019 0.95049 0.91575 1.00412 1.22802 0.96919 0.97547 0.98864 1.23394 0.96795 0.89596 0.91248 1.66883 0.96910 1.42007 1.15292 1.17574 0.85310 0.86150 0.98023 1.45928 1.03603 1.05222 1.57559 1.23474 1.01771 0.83095 0.99016 1.22122 0.90700 1.01687 1.13987 1.24888 1.02142 0.89632 0.95771 1.77586 0.85629 1.25629 1.26505 1.21495 1.00642 0.92020 1.01695 1.24165 0.99079 0.91105 1.09135 1.78184 0.92190 1.16389 1.27523 0.91406 0.78676 0.73704 0.79558 0.75652 0.77867 0.79191 0.76004 0.85295 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.73 11.81 21.66 0.26 -47.48 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.01 16 3 Si 1.02 38.08 29.55 68.60 2.03 40.11 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.28 -10.44 7.11 99.48 0.71 -9.74 16 6 H -0.24 -8.06 7.11 99.48 0.71 -7.35 16 7 C -0.35 -18.20 10.25 84.02 0.86 -17.34 16 8 H 0.15 6.38 7.83 -2.91 -0.02 6.35 16 9 N -0.17 -9.07 3.74 -190.00 -0.71 -9.78 16 10 C -0.07 -3.18 11.49 83.38 0.96 -2.22 16 11 C -0.05 -2.25 6.90 37.76 0.26 -1.99 16 12 N -0.59 -19.63 5.42 -306.29 -1.66 -21.29 16 13 C 0.54 19.32 7.77 86.87 0.67 19.99 16 14 O -0.57 -26.46 13.59 -3.86 -0.05 -26.51 16 15 C -0.06 -1.59 5.91 -19.90 -0.12 -1.71 16 16 C -0.14 -2.17 9.61 22.64 0.22 -1.95 16 17 C 0.15 1.88 11.17 84.64 0.95 2.83 16 18 N -0.50 -9.84 9.83 -192.96 -1.90 -11.73 16 19 C 0.36 9.31 7.55 132.77 1.00 10.32 16 20 N -0.34 -8.88 3.81 -192.28 -0.73 -9.62 16 21 C 0.07 1.22 11.10 83.39 0.93 2.14 16 22 C -0.26 -3.80 10.80 22.00 0.24 -3.56 16 23 C 0.06 1.18 12.02 85.26 1.02 2.21 16 24 N -0.33 -9.24 11.83 -56.97 -0.67 -9.91 16 25 C -0.13 -4.09 9.27 22.76 0.21 -3.87 16 26 C -0.06 -3.29 10.85 85.43 0.93 -2.36 16 27 N -0.31 -18.84 10.39 -56.45 -0.59 -19.43 16 28 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.20 6.46 8.06 -2.91 -0.02 6.44 16 30 H 0.42 9.10 6.96 -92.71 -0.65 8.45 16 31 H 0.19 1.34 6.53 -2.91 -0.02 1.32 16 32 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.20 2.56 8.05 -2.91 -0.02 2.53 16 34 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.13 4.68 7.37 -2.91 -0.02 4.65 16 37 H 0.16 9.21 5.92 -2.91 -0.02 9.20 16 Total: -1.00 -87.09 334.66 5.07 -82.02 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.51 Total: 31.14 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 8.59 Total: 2.48 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -6.00 Total: -129.24 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -87.09 5.07 -82.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739707913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.557 kcal (2) G-P(sol) polarization free energy of solvation -87.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds