Wall clock time and date at job start Tue Mar 31 2020 13:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48507 * 109.46907 * 274.97801 * 3 2 1 5 5 H 1.48499 * 109.47408 * 34.97939 * 3 2 1 6 6 H 1.48500 * 109.47236 * 154.98174 * 3 2 1 7 7 C 1.38980 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99607 * 185.91536 * 7 2 1 9 9 N 1.37312 * 120.00255 * 5.91886 * 7 2 1 10 10 C 1.36505 * 126.07091 * 174.37497 * 9 7 2 11 11 C 1.35689 * 107.50826 * 180.13959 * 10 9 7 12 12 N 1.40562 * 126.08606 * 179.89962 * 11 10 9 13 13 C 1.34773 * 119.99978 * 179.71362 * 12 11 10 14 14 O 1.21638 * 120.00183 * 359.97438 * 13 12 11 15 15 C 1.47304 * 119.99746 * 180.02562 * 13 12 11 16 16 C 1.37921 * 126.80723 * 0.02562 * 15 13 12 17 17 N 1.34204 * 107.89423 * 179.72004 * 16 15 13 18 18 H 0.97005 * 125.17373 * 180.25881 * 17 16 15 19 19 N 1.39770 * 109.66494 * 0.24662 * 17 16 15 20 20 C 1.31380 * 109.07400 * 359.97438 * 19 17 16 21 21 C 1.48263 * 126.51153 * 180.02562 * 20 19 17 22 22 C 1.39813 * 120.90605 * 144.69795 * 21 20 19 23 23 C 1.37970 * 119.01103 * 179.75079 * 22 21 20 24 24 N 1.31936 * 120.88604 * 0.53252 * 23 22 21 25 25 C 1.31926 * 122.01146 * 359.73630 * 24 23 22 26 26 C 1.37961 * 120.89165 * 359.97438 * 25 24 23 27 27 C 1.40664 * 107.83177 * 359.63311 * 11 10 9 28 28 N 1.30908 * 108.38551 * 0.22970 * 27 11 10 29 29 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 30 30 H 1.07998 * 126.24608 * 0.02562 * 10 9 7 31 31 H 0.97000 * 119.99331 * 359.70837 * 12 11 10 32 32 H 1.08006 * 126.05325 * 359.97438 * 16 15 13 33 33 H 1.07994 * 120.49627 * 0.02562 * 22 21 20 34 34 H 1.08005 * 119.55721 * 180.26516 * 23 22 21 35 35 H 1.08006 * 119.55163 * 180.02562 * 25 24 23 36 36 H 1.07998 * 120.49083 * 180.02562 * 26 25 24 37 37 H 1.07999 * 125.80574 * 180.22673 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3892 2.1072 -1.3949 5 1 1.5010 2.6201 0.8026 6 1 3.5932 1.4122 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0969 9 7 1.3269 -2.3897 -0.1216 10 6 1.8863 -3.6288 -0.2437 11 6 0.8733 -4.5262 -0.3414 12 7 1.0109 -5.9178 -0.4838 13 6 -0.0847 -6.6986 -0.5640 14 8 -1.1926 -6.1991 -0.5127 15 6 0.0596 -8.1570 -0.7126 16 6 1.2395 -8.8676 -0.7839 17 7 0.9309 -10.1676 -0.9106 18 1 1.5741 -10.8905 -0.9787 19 7 -0.4582 -10.3216 -0.9292 20 6 -1.0227 -9.1407 -0.8159 21 6 -2.4777 -8.8572 -0.7916 22 6 -2.9961 -7.8305 0.0034 23 6 -4.3559 -7.5973 -0.0078 24 7 -5.1634 -8.3341 -0.7465 25 6 -4.7157 -9.3154 -1.5061 26 6 -3.3695 -9.6127 -1.5587 27 6 -0.3391 -3.8168 -0.2686 28 7 -0.0652 -2.5434 -0.1376 29 1 -0.4850 0.8400 0.0004 30 1 2.9425 -3.8536 -0.2615 31 1 1.8944 -6.3161 -0.5243 32 1 2.2354 -8.4520 -0.7409 33 1 -2.3415 -7.2262 0.6137 34 1 -4.7653 -6.8036 0.5997 35 1 -5.4124 -9.8932 -2.0954 36 1 -3.0100 -10.4172 -2.1832 37 1 -1.3278 -4.2491 -0.3132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746595217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:07 Heat of formation + Delta-G solvation = 169.637403 kcal Electronic energy + Delta-G solvation = -25632.425155 eV Core-core repulsion = 21799.896257 eV Total energy + Delta-G solvation = -3832.528898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38643 -39.76655 -39.69967 -38.27343 -34.37827 -33.59276 -33.16183 -31.16196 -30.69081 -30.61449 -30.07261 -27.62576 -24.99775 -24.31400 -23.48399 -22.95720 -21.01048 -20.70606 -19.98525 -19.33128 -18.43251 -17.45009 -16.63437 -16.15657 -16.02201 -15.61424 -15.44976 -15.17713 -15.08114 -14.26672 -14.17544 -13.93434 -13.71407 -13.62179 -13.28787 -13.06097 -12.93254 -12.74164 -11.72424 -11.67258 -11.42202 -11.28566 -11.19426 -10.94277 -10.55417 -10.53530 -10.15771 -9.54033 -9.31911 -9.22502 -9.14417 -8.91468 -8.81712 -8.68880 -8.05980 -6.70145 -6.56877 -4.23381 0.87712 1.33520 1.35236 2.23841 2.41052 2.94543 3.04367 3.09870 3.37734 3.56714 3.79982 3.86625 3.97862 4.09874 4.36940 4.46486 4.59682 4.79544 4.81538 5.00593 5.05357 5.16354 5.22026 5.34194 5.40291 5.75439 5.81340 6.00023 6.22325 6.23069 6.40337 6.47038 6.80774 6.82400 6.89535 6.95111 7.11384 7.22310 7.24497 7.85452 8.09209 8.17703 8.27364 8.63484 8.85869 9.37193 9.66696 10.39287 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002969 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.726306 B = 9428.070988 C =10854.126868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.058 4.058 12 N -0.618 5.618 13 C 0.574 3.426 14 O -0.529 6.529 15 C -0.259 4.259 16 C 0.100 3.900 17 N -0.464 5.464 18 H 0.444 0.556 19 N -0.279 5.279 20 C 0.166 3.834 21 C 0.015 3.985 22 C -0.099 4.099 23 C 0.091 3.909 24 N -0.480 5.480 25 C 0.082 3.918 26 C -0.145 4.145 27 C -0.030 4.030 28 N -0.261 5.261 29 H 0.275 0.725 30 H 0.144 0.856 31 H 0.392 0.608 32 H 0.190 0.810 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -18.042 -1.441 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.164 4.164 12 N -0.259 5.259 13 C 0.361 3.639 14 O -0.408 6.408 15 C -0.274 4.274 16 C -0.050 4.050 17 N -0.171 5.171 18 H 0.288 0.712 19 N -0.100 5.100 20 C -0.003 4.003 21 C 0.005 3.995 22 C -0.120 4.120 23 C -0.066 4.066 24 N -0.189 5.189 25 C -0.075 4.075 26 C -0.166 4.166 27 C -0.205 4.205 28 N -0.092 5.092 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.225 0.775 32 H 0.207 0.793 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.660 -17.403 -1.382 17.470 hybrid contribution 3.053 -0.111 -0.233 3.064 sum 3.713 -17.513 -1.615 17.975 Atomic orbital electron populations 1.70219 1.06125 1.27992 1.35138 1.25631 0.95679 1.00237 0.95489 0.85829 0.79438 0.80128 0.78851 1.19660 1.20093 1.18827 1.19857 0.92113 0.80722 1.52952 0.86667 1.44543 1.04028 1.03658 1.38798 1.21240 0.96753 0.85852 1.19680 1.17226 0.94357 0.81442 1.23374 1.42312 1.07694 1.05235 1.70677 1.16927 0.84604 0.83981 0.78387 1.90637 1.24755 1.74065 1.51296 1.21420 0.91191 0.94634 1.20191 1.23054 0.99881 0.84764 0.97285 1.45909 1.06016 1.07189 1.57945 0.71178 1.77315 0.87246 1.20898 1.24573 1.21655 0.92784 0.89037 0.96774 1.17947 0.87753 0.96304 0.97519 1.22721 0.96850 0.94600 0.97868 1.22737 0.89880 0.97543 0.96397 1.67589 1.40498 1.05115 1.05747 1.22545 0.93279 0.94888 0.96793 1.22124 0.94365 1.00160 0.99956 1.24139 0.98023 0.90839 1.07542 1.78259 0.90247 1.15170 1.25519 0.91453 0.83817 0.77485 0.79323 0.82216 0.82336 0.82881 0.84911 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.22 11.84 55.49 0.66 -20.57 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.67 29.56 -169.99 -5.02 13.65 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.32 -8.42 10.24 -14.82 -0.15 -8.57 16 8 H 0.12 2.67 7.84 -52.48 -0.41 2.26 16 9 N -0.14 -3.82 3.74 -11.41 -0.04 -3.87 16 10 C -0.08 -1.90 11.49 -16.38 -0.19 -2.09 16 11 C -0.06 -1.28 6.90 -83.85 -0.58 -1.86 16 12 N -0.62 -10.17 5.46 -11.00 -0.06 -10.23 16 13 C 0.57 9.60 7.69 -12.58 -0.10 9.51 16 14 O -0.53 -10.44 9.60 5.24 0.05 -10.39 16 15 C -0.26 -3.43 6.28 -102.95 -0.65 -4.08 16 16 C 0.10 0.85 11.50 -16.63 -0.19 0.66 16 17 N -0.46 -3.76 7.20 30.81 0.22 -3.54 16 18 H 0.44 1.80 8.96 -182.84 -1.64 0.16 16 19 N -0.28 -3.36 12.65 34.57 0.44 -2.92 16 20 C 0.17 2.30 6.98 -80.56 -0.56 1.74 16 21 C 0.01 0.22 5.76 -104.60 -0.60 -0.39 16 22 C -0.10 -1.50 7.90 -39.09 -0.31 -1.81 16 23 C 0.09 1.31 11.17 -17.60 -0.20 1.11 16 24 N -0.48 -6.95 10.35 -13.34 -0.14 -7.09 16 25 C 0.08 1.01 11.17 -17.61 -0.20 0.82 16 26 C -0.14 -1.82 9.88 -39.09 -0.39 -2.21 16 27 C -0.03 -0.76 10.85 -17.03 -0.18 -0.94 16 28 N -0.26 -7.42 10.42 30.80 0.32 -7.10 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.14 2.67 8.06 -52.49 -0.42 2.24 16 31 H 0.39 4.69 7.78 -40.82 -0.32 4.37 16 32 H 0.19 0.78 7.48 -52.48 -0.39 0.39 16 33 H 0.16 2.59 5.73 -52.49 -0.30 2.29 16 34 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 35 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.18 4.40 5.91 -52.49 -0.31 4.09 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -35.67 329.67 -7.19 -42.86 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.20 Total: 11.24 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -4.39 Total: -7.01 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 1.40 Total: -55.31 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.05 Total: -10.39 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.67 -7.19 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746595217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.497 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds