Wall clock time and date at job start Tue Mar 31 2020 13:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48507 * 109.46907 * 274.97801 * 3 2 1 5 5 H 1.48499 * 109.47408 * 34.97939 * 3 2 1 6 6 H 1.48500 * 109.47236 * 154.98174 * 3 2 1 7 7 C 1.38980 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99607 * 185.91536 * 7 2 1 9 9 N 1.37312 * 120.00255 * 5.91886 * 7 2 1 10 10 C 1.36505 * 126.07091 * 174.37497 * 9 7 2 11 11 C 1.35689 * 107.50826 * 180.13959 * 10 9 7 12 12 N 1.40562 * 126.08606 * 179.89962 * 11 10 9 13 13 C 1.34773 * 119.99978 * 179.71362 * 12 11 10 14 14 O 1.21638 * 120.00183 * 359.97438 * 13 12 11 15 15 C 1.47304 * 119.99746 * 180.02562 * 13 12 11 16 16 C 1.37921 * 126.80723 * 0.02562 * 15 13 12 17 17 N 1.34204 * 107.89423 * 179.72004 * 16 15 13 18 18 H 0.97005 * 125.17373 * 180.25881 * 17 16 15 19 19 N 1.39770 * 109.66494 * 0.24662 * 17 16 15 20 20 C 1.31380 * 109.07400 * 359.97438 * 19 17 16 21 21 C 1.48263 * 126.51153 * 180.02562 * 20 19 17 22 22 C 1.39813 * 120.90605 * 144.69795 * 21 20 19 23 23 C 1.37970 * 119.01103 * 179.75079 * 22 21 20 24 24 N 1.31936 * 120.88604 * 0.53252 * 23 22 21 25 25 C 1.31926 * 122.01146 * 359.73630 * 24 23 22 26 26 C 1.37961 * 120.89165 * 359.97438 * 25 24 23 27 27 C 1.40664 * 107.83177 * 359.63311 * 11 10 9 28 28 N 1.30908 * 108.38551 * 0.22970 * 27 11 10 29 29 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 30 30 H 1.07998 * 126.24608 * 0.02562 * 10 9 7 31 31 H 0.97000 * 119.99331 * 359.70837 * 12 11 10 32 32 H 1.08006 * 126.05325 * 359.97438 * 16 15 13 33 33 H 1.07994 * 120.49627 * 0.02562 * 22 21 20 34 34 H 1.08005 * 119.55721 * 180.26516 * 23 22 21 35 35 H 1.08006 * 119.55163 * 180.02562 * 25 24 23 36 36 H 1.07998 * 120.49083 * 180.02562 * 26 25 24 37 37 H 1.07999 * 125.80574 * 180.22673 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3892 2.1072 -1.3949 5 1 1.5010 2.6201 0.8026 6 1 3.5932 1.4122 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0969 9 7 1.3269 -2.3897 -0.1216 10 6 1.8863 -3.6288 -0.2437 11 6 0.8733 -4.5262 -0.3414 12 7 1.0109 -5.9178 -0.4838 13 6 -0.0847 -6.6986 -0.5640 14 8 -1.1926 -6.1991 -0.5127 15 6 0.0596 -8.1570 -0.7126 16 6 1.2395 -8.8676 -0.7839 17 7 0.9309 -10.1676 -0.9106 18 1 1.5741 -10.8905 -0.9787 19 7 -0.4582 -10.3216 -0.9292 20 6 -1.0227 -9.1407 -0.8159 21 6 -2.4777 -8.8572 -0.7916 22 6 -2.9961 -7.8305 0.0034 23 6 -4.3559 -7.5973 -0.0078 24 7 -5.1634 -8.3341 -0.7465 25 6 -4.7157 -9.3154 -1.5061 26 6 -3.3695 -9.6127 -1.5587 27 6 -0.3391 -3.8168 -0.2686 28 7 -0.0652 -2.5434 -0.1376 29 1 -0.4850 0.8400 0.0004 30 1 2.9425 -3.8536 -0.2615 31 1 1.8944 -6.3161 -0.5243 32 1 2.2354 -8.4520 -0.7409 33 1 -2.3415 -7.2262 0.6137 34 1 -4.7653 -6.8036 0.5997 35 1 -5.4124 -9.8932 -2.0954 36 1 -3.0100 -10.4172 -2.1832 37 1 -1.3278 -4.2491 -0.3132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746595217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:07 Heat of formation + Delta-G solvation = 142.945497 kcal Electronic energy + Delta-G solvation = -25633.582603 eV Core-core repulsion = 21799.896257 eV Total energy + Delta-G solvation = -3833.686346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32013 -41.49228 -40.72491 -39.73334 -35.90631 -35.00260 -34.52891 -32.32628 -32.14081 -31.55814 -31.48507 -29.30831 -26.79595 -25.34167 -24.53445 -24.13143 -22.74634 -21.89200 -21.20278 -20.87144 -19.44627 -19.15416 -17.61797 -17.44789 -17.21557 -17.06230 -16.73677 -16.69443 -16.12670 -15.70628 -15.50458 -15.07104 -14.96882 -14.75754 -14.71832 -14.64730 -14.34304 -13.71767 -13.45785 -13.21827 -12.92946 -12.78537 -12.64956 -12.14165 -12.04795 -11.74511 -11.49704 -10.95877 -10.80961 -10.69913 -10.40521 -10.19839 -10.03809 -9.95268 -9.74413 -8.43844 -8.41556 -6.18569 -0.16681 0.28532 0.51094 1.18169 1.35500 1.42057 1.59687 1.69343 1.79821 2.09966 2.22821 2.37004 2.77665 2.93320 2.97523 3.13253 3.22536 3.53956 3.61426 4.00725 4.12082 4.17264 4.24985 4.36649 4.42237 4.53018 4.67756 4.73008 4.83033 4.97883 5.06455 5.17553 5.21718 5.35188 5.37077 5.57195 5.78413 6.01795 6.19186 6.36606 6.41527 6.80377 6.88192 7.03513 7.49953 7.55386 7.76518 8.56659 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002969 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.726306 B = 9428.070988 C =10854.126868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.007 4.007 3 Si 1.017 2.983 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.172 5.172 10 C -0.078 4.078 11 C -0.038 4.038 12 N -0.609 5.609 13 C 0.574 3.426 14 O -0.565 6.565 15 C -0.300 4.300 16 C 0.146 3.854 17 N -0.440 5.440 18 H 0.465 0.535 19 N -0.290 5.290 20 C 0.149 3.851 21 C 0.002 3.998 22 C -0.116 4.116 23 C 0.078 3.922 24 N -0.500 5.500 25 C 0.083 3.917 26 C -0.143 4.143 27 C -0.057 4.057 28 N -0.313 5.313 29 H 0.275 0.725 30 H 0.190 0.810 31 H 0.418 0.582 32 H 0.243 0.757 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.189 0.811 36 H 0.156 0.844 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -20.348 -2.228 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.165 1.165 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.059 4.941 10 C -0.228 4.228 11 C -0.144 4.144 12 N -0.254 5.254 13 C 0.363 3.637 14 O -0.446 6.446 15 C -0.315 4.315 16 C -0.006 4.006 17 N -0.148 5.148 18 H 0.315 0.685 19 N -0.112 5.112 20 C -0.019 4.019 21 C -0.009 4.009 22 C -0.137 4.137 23 C -0.078 4.078 24 N -0.210 5.210 25 C -0.074 4.074 26 C -0.163 4.163 27 C -0.232 4.232 28 N -0.145 5.145 29 H 0.084 0.916 30 H 0.207 0.793 31 H 0.255 0.745 32 H 0.259 0.741 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.205 0.795 36 H 0.173 0.827 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.128 -19.804 -2.168 20.345 hybrid contribution 2.021 0.281 -0.025 2.041 sum 6.149 -19.522 -2.192 20.585 Atomic orbital electron populations 1.70408 1.08413 1.28910 1.37665 1.26838 0.96406 1.04266 0.94285 0.84612 0.78587 0.74417 0.78798 1.19352 1.20371 1.16476 1.20570 0.93353 0.81083 1.53496 0.84210 1.44816 1.03574 1.05206 1.40519 1.22012 0.98843 0.84515 1.17473 1.17259 0.92684 0.83967 1.20525 1.42144 1.09276 1.02833 1.71138 1.17494 0.83899 0.85499 0.76764 1.90639 1.26376 1.75171 1.52401 1.21100 0.93142 0.92580 1.24721 1.23699 1.00389 0.84021 0.92509 1.45979 1.05177 1.08035 1.55638 0.68528 1.77265 0.89158 1.20061 1.24748 1.21649 0.92654 0.89861 0.97779 1.18226 0.89043 0.96171 0.97416 1.22567 0.96855 0.95482 0.98817 1.22867 0.89939 0.98059 0.96935 1.67636 1.40747 1.06035 1.06534 1.23153 0.94097 0.94157 0.96001 1.22383 0.94171 1.00239 0.99548 1.24205 0.99168 0.90995 1.08864 1.78150 0.92278 1.16826 1.27236 0.91576 0.79331 0.74475 0.74072 0.84126 0.81803 0.79453 0.82681 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.76 11.84 21.66 0.26 -47.50 16 2 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 3 Si 1.02 38.42 29.56 68.60 2.03 40.45 16 4 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 7 C -0.35 -18.47 10.24 84.01 0.86 -17.61 16 8 H 0.14 6.27 7.84 -2.91 -0.02 6.25 16 9 N -0.17 -9.35 3.74 -190.01 -0.71 -10.06 16 10 C -0.08 -3.43 11.49 83.38 0.96 -2.47 16 11 C -0.04 -1.66 6.90 37.74 0.26 -1.40 16 12 N -0.61 -18.93 5.46 -306.95 -1.67 -20.60 16 13 C 0.57 18.94 7.69 86.63 0.67 19.61 16 14 O -0.57 -23.37 9.60 -4.15 -0.04 -23.41 16 15 C -0.30 -7.34 6.28 -18.78 -0.12 -7.46 16 16 C 0.15 1.80 11.50 84.26 0.97 2.77 16 17 N -0.44 -5.15 7.20 -56.42 -0.41 -5.56 16 18 H 0.47 1.32 8.96 -213.53 -1.91 -0.60 16 19 N -0.29 -6.21 12.65 -44.53 -0.56 -6.77 16 20 C 0.15 3.93 6.98 44.07 0.31 4.24 16 21 C 0.00 0.05 5.76 -19.85 -0.11 -0.07 16 22 C -0.12 -3.73 7.90 22.59 0.18 -3.55 16 23 C 0.08 2.38 11.17 84.61 0.95 3.33 16 24 N -0.50 -14.76 10.35 -196.13 -2.03 -16.79 16 25 C 0.08 1.99 11.17 84.61 0.95 2.93 16 26 C -0.14 -3.46 9.88 22.58 0.22 -3.24 16 27 C -0.06 -3.02 10.85 85.42 0.93 -2.09 16 28 N -0.31 -18.67 10.42 -56.46 -0.59 -19.25 16 29 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.19 6.30 8.06 -2.91 -0.02 6.27 16 31 H 0.42 8.30 7.78 -92.71 -0.72 7.57 16 32 H 0.24 0.27 7.48 -2.91 -0.02 0.25 16 33 H 0.14 5.01 5.73 -2.91 -0.02 4.99 16 34 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 35 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.17 9.02 5.91 -2.91 -0.02 9.00 16 Total: -1.00 -84.99 329.67 2.29 -82.70 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -1.46 Total: 31.67 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 7.47 Total: -4.88 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.72 Total: -126.53 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.41 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -84.99 2.29 -82.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746595217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.642 kcal (2) G-P(sol) polarization free energy of solvation -84.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds