Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34752 * 116.99598 * 270.00121 * 13 3 2 15 15 O 1.21503 * 120.00101 * 0.02562 * 14 13 3 16 16 C 1.47469 * 119.99737 * 179.97438 * 14 13 3 17 17 C 1.40232 * 119.94525 * 359.72098 * 16 14 13 18 18 C 1.36165 * 120.51594 * 179.77280 * 17 16 14 19 19 C 1.40031 * 120.08345 * 0.48558 * 18 17 16 20 20 N 1.35536 * 133.39275 * 179.74331 * 19 18 17 21 21 C 1.30235 * 109.70864 * 180.02562 * 20 19 18 22 22 C 1.50705 * 124.92492 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.47060 * 29.97934 * 22 21 20 24 24 F 1.39904 * 109.46907 * 149.97945 * 22 21 20 25 25 N 1.35850 * 110.14934 * 0.02562 * 21 20 19 26 26 H 0.97000 * 126.36134 * 179.97438 * 25 21 20 27 27 C 1.38187 * 107.26601 * 359.97438 * 25 21 20 28 28 C 1.38391 * 134.01439 * 180.02562 * 27 25 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.73656 * 0.02899 * 17 16 14 36 36 H 1.07994 * 119.95541 * 180.24152 * 18 17 16 37 37 H 1.09005 * 109.46948 * 269.97454 * 22 21 20 38 38 H 1.08002 * 120.21508 * 359.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 8 1.6559 2.0918 1.2407 14 6 0.4681 2.7280 1.2559 15 8 -0.2277 2.7395 0.2599 16 6 0.0123 3.4093 2.4818 17 6 0.8132 3.3894 3.6327 18 6 0.4058 4.0185 4.7695 19 6 -0.8258 4.6841 4.8005 20 7 -1.4855 5.3777 5.7601 21 6 -2.6193 5.8109 5.2879 22 6 -3.6241 6.6218 6.0650 23 9 -2.9591 7.3937 7.0237 24 9 -4.3209 7.4628 5.1907 25 7 -2.7653 5.4248 3.9937 26 1 -3.5209 5.6192 3.4173 27 6 -1.6375 4.7035 3.6511 28 6 -1.2170 4.0672 2.4963 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0604 -2.9502 35 1 1.7624 2.8745 3.6160 36 1 1.0315 4.0007 5.6495 37 1 -4.3262 5.9517 6.5612 38 1 -1.8372 4.0797 1.6122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = -119.884247 kcal Electronic energy + Delta-G solvation = -26393.994138 eV Core-core repulsion = 22065.928702 eV Total energy + Delta-G solvation = -4328.065437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.65787 -47.67132 -42.54954 -39.74702 -37.37566 -35.75780 -33.61743 -33.54055 -31.46763 -30.89149 -30.31333 -27.87722 -27.06078 -23.99559 -23.04650 -22.76162 -21.60688 -20.95112 -19.70999 -18.79668 -18.25365 -18.18506 -17.52199 -16.85959 -16.62966 -16.21772 -15.65930 -15.35498 -15.22928 -14.81910 -14.49899 -14.42157 -14.10602 -14.00497 -13.53418 -13.29866 -12.93308 -12.80528 -12.39980 -12.18844 -11.85974 -11.73939 -11.48990 -11.34916 -11.22096 -11.12240 -10.99120 -10.68349 -10.45694 -10.30063 -9.88541 -9.73844 -9.42181 -8.84475 -8.77483 -8.50595 -8.45386 -6.21526 -4.28480 0.27088 1.22084 1.96054 2.09361 2.82877 3.05339 3.22206 3.29130 3.33330 3.38819 3.54459 3.83879 3.92222 4.17058 4.28808 4.35222 4.68630 4.93318 5.01282 5.07359 5.10886 5.23361 5.61423 5.82040 6.03559 6.17936 6.20738 6.26516 6.30873 6.43008 6.53452 6.74209 6.83192 6.91884 7.12765 7.18324 7.27674 7.58179 7.69703 7.88514 8.11402 8.54914 8.83788 9.36827 10.85351 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.002477 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.223823 B =11303.366937 C =11809.301200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.346 6.346 14 C 0.498 3.502 15 O -0.511 6.511 16 C -0.080 4.080 17 C -0.072 4.072 18 C -0.070 4.070 19 C 0.066 3.934 20 N -0.451 5.451 21 C 0.201 3.799 22 C 0.365 3.635 23 F -0.172 7.172 24 F -0.192 7.192 25 N -0.575 5.575 26 H 0.430 0.570 27 C 0.047 3.953 28 C -0.049 4.049 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.324 8.969 14.801 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.262 6.262 14 C 0.342 3.658 15 O -0.402 6.402 16 C -0.083 4.083 17 C -0.093 4.093 18 C -0.090 4.090 19 C -0.054 4.054 20 N -0.172 5.172 21 C -0.067 4.067 22 C 0.309 3.691 23 F -0.153 7.153 24 F -0.173 7.173 25 N -0.187 5.187 26 H 0.270 0.730 27 C -0.062 4.062 28 C -0.070 4.070 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.110 8.999 15.141 22.568 hybrid contribution 0.128 0.043 -1.444 1.450 sum -13.982 9.041 13.698 21.560 Atomic orbital electron populations 1.21867 0.98412 0.99069 1.00716 1.22028 0.92615 0.99268 1.03485 1.20750 0.95139 0.88773 0.78393 0.93382 1.21072 0.89534 1.38932 1.06311 0.91153 1.24886 0.99277 0.94739 0.95058 1.69898 1.35328 1.37868 1.09461 0.86227 0.83837 0.77890 0.78254 1.19419 1.20718 1.20782 1.86538 1.33201 1.62189 1.44281 1.20688 0.81287 0.76980 0.86872 1.90790 1.55571 1.58672 1.35153 1.19177 0.94827 1.00590 0.93745 1.21109 1.00250 0.97265 0.90640 1.20007 0.93105 0.96701 0.99179 1.19202 0.96421 1.00731 0.89012 1.70250 1.03247 1.13443 1.30237 1.23786 0.96937 1.01943 0.84039 1.19525 0.85997 0.83971 0.79612 1.93098 1.82254 1.76813 1.63140 1.93061 1.79351 1.74050 1.70835 1.42619 1.19021 1.45257 1.11849 0.72994 1.18615 0.89074 1.00912 0.97601 1.20006 0.95717 0.95668 0.95576 0.94769 0.92815 0.94961 0.93833 0.87264 0.92417 0.82860 0.84149 0.83759 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.56 37.16 0.32 -2.74 16 2 C -0.14 -3.28 5.49 -26.73 -0.15 -3.43 16 3 C 0.22 5.71 2.25 -27.88 -0.06 5.65 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.15 8.90 -34.44 -0.31 -14.45 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.35 -7.85 9.03 -40.63 -0.37 -8.22 16 14 C 0.50 10.08 6.34 34.49 0.22 10.30 16 15 O -0.51 -11.34 13.51 -19.27 -0.26 -11.60 16 16 C -0.08 -1.28 5.88 -104.94 -0.62 -1.90 16 17 C -0.07 -1.01 9.53 -39.58 -0.38 -1.38 16 18 C -0.07 -0.88 10.03 -39.66 -0.40 -1.28 16 19 C 0.07 0.88 7.23 -84.62 -0.61 0.27 16 20 N -0.45 -5.72 11.16 -8.18 -0.09 -5.81 16 21 C 0.20 1.95 7.62 -154.89 -1.18 0.77 16 22 C 0.36 2.30 5.86 36.01 0.21 2.52 16 23 F -0.17 -1.52 17.24 2.25 0.04 -1.48 16 24 F -0.19 -1.29 17.26 2.25 0.04 -1.25 16 25 N -0.58 -5.28 6.15 -8.03 -0.05 -5.33 16 26 H 0.43 2.54 8.96 -40.82 -0.37 2.18 16 27 C 0.05 0.58 7.29 -84.00 -0.61 -0.03 16 28 C -0.05 -0.67 9.61 -39.08 -0.38 -1.04 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 31 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.15 2.07 7.58 -52.49 -0.40 1.67 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.15 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.14 1.84 7.64 -52.49 -0.40 1.44 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -31.96 336.11 -7.85 -39.81 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.80 Total: 2.31 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.03 Total: -5.18 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.49 Total: -35.09 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.63 Total: -19.82 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.73 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.96 -7.85 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.070 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds