Wall clock time and date at job start Tue Mar 31 2020 14:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34752 * 116.99598 * 270.00121 * 13 3 2 15 15 O 1.21503 * 120.00101 * 0.02562 * 14 13 3 16 16 C 1.47469 * 119.99737 * 179.97438 * 14 13 3 17 17 C 1.40232 * 119.94525 * 359.72098 * 16 14 13 18 18 C 1.36165 * 120.51594 * 179.77280 * 17 16 14 19 19 C 1.40031 * 120.08345 * 0.48558 * 18 17 16 20 20 N 1.35536 * 133.39275 * 179.74331 * 19 18 17 21 21 C 1.30235 * 109.70864 * 180.02562 * 20 19 18 22 22 C 1.50705 * 124.92492 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.47060 * 29.97934 * 22 21 20 24 24 F 1.39904 * 109.46907 * 149.97945 * 22 21 20 25 25 N 1.35850 * 110.14934 * 0.02562 * 21 20 19 26 26 H 0.97000 * 126.36134 * 179.97438 * 25 21 20 27 27 C 1.38187 * 107.26601 * 359.97438 * 25 21 20 28 28 C 1.38391 * 134.01439 * 180.02562 * 27 25 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.73656 * 0.02899 * 17 16 14 36 36 H 1.07994 * 119.95541 * 180.24152 * 18 17 16 37 37 H 1.09005 * 109.46948 * 269.97454 * 22 21 20 38 38 H 1.08002 * 120.21508 * 359.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 8 1.6559 2.0918 1.2407 14 6 0.4681 2.7280 1.2559 15 8 -0.2277 2.7395 0.2599 16 6 0.0123 3.4093 2.4818 17 6 0.8132 3.3894 3.6327 18 6 0.4058 4.0185 4.7695 19 6 -0.8258 4.6841 4.8005 20 7 -1.4855 5.3777 5.7601 21 6 -2.6193 5.8109 5.2879 22 6 -3.6241 6.6218 6.0650 23 9 -2.9591 7.3937 7.0237 24 9 -4.3209 7.4628 5.1907 25 7 -2.7653 5.4248 3.9937 26 1 -3.5209 5.6192 3.4173 27 6 -1.6375 4.7035 3.6511 28 6 -1.2170 4.0672 2.4963 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0604 -2.9502 35 1 1.7624 2.8745 3.6160 36 1 1.0315 4.0007 5.6495 37 1 -4.3262 5.9517 6.5612 38 1 -1.8372 4.0797 1.6122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:04 Heat of formation + Delta-G solvation = -138.214171 kcal Electronic energy + Delta-G solvation = -26394.788984 eV Core-core repulsion = 22065.928702 eV Total energy + Delta-G solvation = -4328.860282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.20440 -48.23361 -43.47337 -41.38294 -38.57944 -37.46058 -35.48956 -34.54757 -33.36652 -31.86941 -31.35888 -29.42641 -28.32684 -25.53237 -24.60432 -23.78857 -22.50071 -22.37995 -21.44028 -19.80993 -19.24991 -18.77242 -18.72027 -18.23192 -17.82344 -17.61359 -17.10079 -16.75053 -16.39235 -16.35266 -15.74567 -15.14667 -15.01710 -14.94581 -14.75802 -14.56326 -14.22810 -14.15745 -13.90261 -13.41804 -13.30590 -13.14058 -12.98710 -12.82192 -12.79992 -12.60607 -12.52900 -12.12159 -12.08957 -11.75311 -11.53267 -11.40837 -11.31841 -10.81234 -10.52194 -9.79021 -9.48944 -8.26405 -6.42422 -0.78795 0.17740 0.98670 1.25358 1.43522 1.43912 1.57548 1.72521 1.94073 2.19434 2.43104 2.65348 2.95093 3.03772 3.15852 3.58852 3.69070 3.74169 3.83766 3.96311 4.04136 4.08504 4.38846 4.40788 4.43726 4.58998 4.82735 4.84188 4.97567 5.09183 5.13240 5.22256 5.22568 5.38330 5.50822 5.53104 5.68305 5.96212 6.00997 6.11141 6.38461 6.61718 6.94366 7.28480 8.80656 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.002477 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.223823 B =11303.366937 C =11809.301200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.272 1.272 12 H -0.278 1.278 13 O -0.352 6.352 14 C 0.496 3.504 15 O -0.538 6.538 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.066 4.066 19 C 0.060 3.940 20 N -0.482 5.482 21 C 0.220 3.780 22 C 0.367 3.633 23 F -0.186 7.186 24 F -0.192 7.192 25 N -0.561 5.561 26 H 0.446 0.554 27 C 0.040 3.960 28 C -0.035 4.035 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.270 0.730 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.199 0.801 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 9.693 16.723 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.197 1.197 12 H -0.203 1.203 13 O -0.268 6.268 14 C 0.342 3.658 15 O -0.431 6.431 16 C -0.111 4.111 17 C -0.093 4.093 18 C -0.085 4.085 19 C -0.060 4.060 20 N -0.204 5.204 21 C -0.050 4.050 22 C 0.312 3.688 23 F -0.167 7.167 24 F -0.173 7.173 25 N -0.174 5.174 26 H 0.290 0.710 27 C -0.070 4.070 28 C -0.055 4.055 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.216 0.784 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.124 9.739 17.062 24.793 hybrid contribution 0.263 -0.044 -1.953 1.971 sum -14.861 9.695 15.109 23.305 Atomic orbital electron populations 1.21718 0.96334 1.00616 1.00087 1.21872 0.94435 0.98006 1.02468 1.20438 0.94620 0.89316 0.78396 0.97328 1.21354 0.90414 1.39748 1.06883 0.91427 1.25776 1.04085 0.93952 0.94418 1.70017 1.37302 1.38063 1.09869 0.85181 0.77904 0.78270 0.78349 1.18717 1.19741 1.20343 1.86516 1.34871 1.62812 1.42616 1.21398 0.80048 0.76223 0.88095 1.90763 1.55974 1.59767 1.36592 1.18916 0.96640 1.02959 0.92545 1.21051 1.00044 0.97726 0.90526 1.20153 0.93283 0.95834 0.99222 1.19498 0.96682 1.00345 0.89495 1.70285 1.04590 1.14871 1.30620 1.24586 0.96406 1.00107 0.83861 1.20129 0.85623 0.84070 0.78954 1.93075 1.82757 1.77303 1.63572 1.93069 1.79023 1.74189 1.71015 1.42611 1.18626 1.44105 1.12033 0.71012 1.18492 0.90204 1.01457 0.96888 1.19956 0.94747 0.94639 0.96200 0.92007 0.94453 0.94517 0.93385 0.89497 0.92072 0.82999 0.81974 0.78433 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.56 71.98 0.62 -5.03 16 2 C -0.13 -6.45 5.49 30.60 0.17 -6.29 16 3 C 0.23 12.12 2.25 29.85 0.07 12.19 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -30.58 8.90 25.60 0.23 -30.36 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.83 11.29 21.45 0.24 -51.59 16 9 Si 0.98 42.56 29.54 68.60 2.03 44.59 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 O -0.35 -16.63 9.03 -56.63 -0.51 -17.14 16 14 C 0.50 20.86 6.34 70.25 0.45 21.30 16 15 O -0.54 -24.96 13.51 19.83 0.27 -24.69 16 16 C -0.11 -3.48 5.88 -20.07 -0.12 -3.60 16 17 C -0.07 -2.03 9.53 22.27 0.21 -1.82 16 18 C -0.07 -1.57 10.03 22.22 0.22 -1.35 16 19 C 0.06 1.49 7.23 39.61 0.29 1.78 16 20 N -0.48 -11.12 11.16 -179.79 -2.01 -13.12 16 21 C 0.22 3.60 7.62 137.95 1.05 4.65 16 22 C 0.37 3.26 5.86 71.24 0.42 3.68 16 23 F -0.19 -2.76 17.24 44.97 0.78 -1.98 16 24 F -0.19 -1.91 17.26 44.97 0.78 -1.13 16 25 N -0.56 -8.79 6.15 -179.33 -1.10 -9.90 16 26 H 0.45 3.95 8.96 -92.71 -0.83 3.12 16 27 C 0.04 0.92 7.29 38.79 0.28 1.20 16 28 C -0.03 -0.94 9.61 22.59 0.22 -0.72 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.71 7.79 -2.39 -0.02 1.69 16 31 H 0.04 1.52 6.06 -2.38 -0.01 1.51 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.09 4.73 5.95 -2.39 -0.01 4.71 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.15 4.18 7.58 -2.91 -0.02 4.16 16 36 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.20 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.15 3.75 7.64 -2.91 -0.02 3.72 16 Total: -1.00 -71.38 336.11 5.32 -66.06 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.31 Total: 11.88 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.54 Total: -2.96 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.87 Total: -74.61 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.24 Total: -41.83 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 1.55 Total: -3.11 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.38 5.32 -66.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.156 kcal (2) G-P(sol) polarization free energy of solvation -71.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds