Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 H 1.08999 * 109.47071 * 54.99769 * 3 2 1 5 5 C 1.50699 * 109.46952 * 174.99973 * 3 2 1 6 6 H 1.07999 * 119.99825 * 120.00112 * 5 3 2 7 7 C 1.37874 * 120.00216 * 299.99660 * 5 3 2 8 8 N 1.31519 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47151 * 90.00390 * 9 7 5 11 11 H 1.48506 * 109.47269 * 210.00224 * 9 7 5 12 12 H 1.48496 * 109.47021 * 330.00074 * 9 7 5 13 13 O 1.45204 * 109.47101 * 295.00114 * 3 2 1 14 14 C 1.34746 * 117.00121 * 90.00121 * 13 3 2 15 15 O 1.21506 * 120.00136 * 0.02562 * 14 13 3 16 16 C 1.47478 * 119.99959 * 179.97438 * 14 13 3 17 17 C 1.40218 * 119.93968 * 359.97438 * 16 14 13 18 18 C 1.36166 * 120.51179 * 180.02562 * 17 16 14 19 19 C 1.40032 * 120.08730 * 359.97438 * 18 17 16 20 20 N 1.35535 * 133.39670 * 179.68702 * 19 18 17 21 21 C 1.30234 * 109.70854 * 179.91094 * 20 19 18 22 22 C 1.50706 * 124.92745 * 180.14553 * 21 20 19 23 23 F 1.39898 * 109.46806 * 120.27204 * 22 21 20 24 24 F 1.39893 * 109.47328 * 240.27668 * 22 21 20 25 25 N 1.35850 * 110.15007 * 0.38922 * 21 20 19 26 26 H 0.97004 * 126.36363 * 179.76442 * 25 21 20 27 27 C 1.38188 * 107.26705 * 359.75832 * 25 21 20 28 28 C 1.38386 * 134.01681 * 179.97438 * 27 25 21 29 29 H 1.08994 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46678 * 300.00005 * 1 2 3 31 31 H 1.08994 * 109.46812 * 60.00113 * 1 2 3 32 32 H 1.09000 * 109.46678 * 239.99995 * 2 1 3 33 33 H 1.08994 * 109.46812 * 119.99887 * 2 1 3 34 34 H 0.96995 * 120.00570 * 180.02562 * 8 7 5 35 35 H 1.07996 * 119.75026 * 0.04683 * 17 16 14 36 36 H 1.08006 * 119.95627 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46761 * 0.27378 * 22 21 20 38 38 H 1.07998 * 120.21861 * 0.04637 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1434 0.8784 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0050 0.8812 1.3818 10 1 6.4417 2.1142 2.0850 11 1 6.4396 -0.3098 2.1550 12 1 6.6136 0.8416 0.0279 13 8 1.6559 2.0917 -1.2407 14 6 0.4682 2.7279 -1.2560 15 8 -0.2272 2.7403 -0.2598 16 6 0.0129 3.4101 -2.4817 17 6 0.8172 3.3964 -3.6302 18 6 0.4085 4.0229 -4.7679 19 6 -0.8235 4.6878 -4.7994 20 7 -1.4800 5.3873 -5.7569 21 6 -2.6166 5.8152 -5.2866 22 6 -3.6204 6.6280 -6.0631 23 9 -4.8353 5.9367 -6.1211 24 9 -3.8144 7.8595 -5.4283 25 7 -2.7637 5.4273 -3.9930 26 1 -3.5197 5.6211 -3.4169 27 6 -1.6363 4.7053 -3.6506 28 6 -1.2168 4.0673 -2.4964 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0611 2.9499 35 1 1.7681 2.8846 -3.6124 36 1 1.0350 4.0063 -5.6476 37 1 -3.2487 6.7950 -7.0740 38 1 -1.8377 4.0784 -1.6129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = -121.321179 kcal Electronic energy + Delta-G solvation = -26398.018255 eV Core-core repulsion = 22069.890508 eV Total energy + Delta-G solvation = -4328.127747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.71528 -47.71655 -42.56119 -39.75069 -37.38399 -35.75980 -33.66517 -33.54091 -31.46989 -30.88941 -30.34036 -27.87617 -27.05360 -23.96754 -23.05766 -22.78113 -21.69884 -20.94599 -19.72026 -18.75439 -18.34513 -17.99522 -17.61721 -16.89970 -16.64849 -16.22572 -15.67436 -15.39848 -15.23743 -14.81528 -14.55913 -14.42724 -14.13636 -14.05793 -13.58325 -13.25975 -12.90648 -12.79288 -12.39473 -12.17830 -11.92378 -11.76549 -11.49131 -11.34818 -11.23786 -11.15495 -10.96734 -10.70278 -10.52104 -10.30973 -9.88422 -9.73844 -9.42551 -8.85145 -8.80095 -8.51167 -8.46399 -6.21326 -4.28542 0.25237 1.20910 1.97916 2.09896 2.70702 3.03415 3.23172 3.28708 3.31965 3.44406 3.53959 3.83015 4.01252 4.22595 4.28194 4.31457 4.66176 4.92056 5.00470 5.05994 5.10898 5.22608 5.59419 5.80909 6.01691 6.17223 6.20836 6.26332 6.30296 6.43185 6.51661 6.73099 6.83309 6.92220 7.12971 7.18348 7.23309 7.57937 7.69769 7.88439 8.11402 8.54671 8.83331 9.36719 10.85488 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028698 B = 0.002478 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.433790 B =11295.941147 C =11747.164693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.346 6.346 14 C 0.497 3.503 15 O -0.510 6.510 16 C -0.079 4.079 17 C -0.072 4.072 18 C -0.070 4.070 19 C 0.066 3.934 20 N -0.453 5.453 21 C 0.205 3.795 22 C 0.359 3.641 23 F -0.187 7.187 24 F -0.187 7.187 25 N -0.573 5.573 26 H 0.430 0.570 27 C 0.049 3.951 28 C -0.049 4.049 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.109 0.891 34 H 0.267 0.733 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 10.133 -15.445 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.262 6.262 14 C 0.341 3.659 15 O -0.401 6.401 16 C -0.082 4.082 17 C -0.093 4.093 18 C -0.090 4.090 19 C -0.054 4.054 20 N -0.175 5.175 21 C -0.063 4.063 22 C 0.303 3.697 23 F -0.168 7.168 24 F -0.168 7.168 25 N -0.185 5.185 26 H 0.269 0.731 27 C -0.061 4.061 28 C -0.070 4.070 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.514 10.135 -15.759 22.532 hybrid contribution -0.036 -0.071 1.512 1.514 sum -12.551 10.065 -14.247 21.489 Atomic orbital electron populations 1.21868 0.98412 0.99088 1.00716 1.22029 0.92610 0.99265 1.03489 1.20743 0.95116 0.88777 0.78377 0.93389 1.21028 0.89530 1.39044 1.06329 0.91206 1.24882 0.99269 0.94715 0.95065 1.69885 1.35435 1.37777 1.09462 0.86278 0.83820 0.77693 0.78388 1.20418 1.20962 1.19541 1.86535 1.33179 1.62196 1.44301 1.20689 0.81295 0.77001 0.86872 1.90793 1.55569 1.58655 1.35126 1.19182 0.94749 1.00515 0.93793 1.21108 1.00249 0.97258 0.90639 1.20001 0.93028 0.96809 0.99143 1.19152 0.96434 1.00736 0.89049 1.70183 1.03478 1.13567 1.30250 1.23680 0.96689 1.02034 0.83908 1.19690 0.78350 0.74795 0.96848 1.93081 1.46739 1.79691 1.97322 1.93080 1.95358 1.43555 1.84832 1.42722 1.18819 1.44763 1.12160 0.73055 1.18646 0.89141 1.00694 0.97620 1.20023 0.95738 0.95593 0.95629 0.94754 0.92821 0.94959 0.93827 0.87258 0.92352 0.82827 0.84114 0.82763 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.14 -3.29 5.49 -26.73 -0.15 -3.44 16 3 C 0.22 5.72 2.25 -27.88 -0.06 5.66 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.16 8.90 -34.44 -0.31 -14.46 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 O -0.35 -7.85 9.03 -40.62 -0.37 -8.22 16 14 C 0.50 10.09 6.34 34.50 0.22 10.31 16 15 O -0.51 -11.38 13.51 -19.27 -0.26 -11.64 16 16 C -0.08 -1.27 5.88 -104.94 -0.62 -1.88 16 17 C -0.07 -0.99 9.53 -39.58 -0.38 -1.37 16 18 C -0.07 -0.86 10.03 -39.65 -0.40 -1.26 16 19 C 0.07 0.86 7.23 -84.61 -0.61 0.25 16 20 N -0.45 -5.45 11.26 -8.18 -0.09 -5.54 16 21 C 0.21 2.00 7.51 -154.89 -1.16 0.84 16 22 C 0.36 2.33 5.86 36.01 0.21 2.54 16 23 F -0.19 -1.39 17.32 2.25 0.04 -1.35 16 24 F -0.19 -1.39 17.32 2.25 0.04 -1.35 16 25 N -0.57 -5.62 6.23 -8.03 -0.05 -5.67 16 26 H 0.43 2.98 8.96 -40.82 -0.37 2.61 16 27 C 0.05 0.61 7.29 -84.00 -0.61 0.00 16 28 C -0.05 -0.68 9.61 -39.08 -0.38 -1.06 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 31 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 2.88 5.95 -51.93 -0.31 2.57 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.15 2.05 7.58 -52.49 -0.40 1.65 16 36 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 37 H 0.16 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.14 1.88 7.63 -52.49 -0.40 1.48 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -31.25 336.33 -7.83 -39.08 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.80 Total: 3.01 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -4.02 Total: -5.04 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.48 Total: -35.17 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.63 Total: -19.86 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.70 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.25 -7.83 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.240 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds