Wall clock time and date at job start Tue Mar 31 2020 14:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 H 1.08999 * 109.47071 * 54.99769 * 3 2 1 5 5 C 1.50699 * 109.46952 * 174.99973 * 3 2 1 6 6 H 1.07999 * 119.99825 * 120.00112 * 5 3 2 7 7 C 1.37874 * 120.00216 * 299.99660 * 5 3 2 8 8 N 1.31519 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47151 * 90.00390 * 9 7 5 11 11 H 1.48506 * 109.47269 * 210.00224 * 9 7 5 12 12 H 1.48496 * 109.47021 * 330.00074 * 9 7 5 13 13 O 1.45204 * 109.47101 * 295.00114 * 3 2 1 14 14 C 1.34746 * 117.00121 * 90.00121 * 13 3 2 15 15 O 1.21506 * 120.00136 * 0.02562 * 14 13 3 16 16 C 1.47478 * 119.99959 * 179.97438 * 14 13 3 17 17 C 1.40218 * 119.93968 * 359.97438 * 16 14 13 18 18 C 1.36166 * 120.51179 * 180.02562 * 17 16 14 19 19 C 1.40032 * 120.08730 * 359.97438 * 18 17 16 20 20 N 1.35535 * 133.39670 * 179.68702 * 19 18 17 21 21 C 1.30234 * 109.70854 * 179.91094 * 20 19 18 22 22 C 1.50706 * 124.92745 * 180.14553 * 21 20 19 23 23 F 1.39898 * 109.46806 * 120.27204 * 22 21 20 24 24 F 1.39893 * 109.47328 * 240.27668 * 22 21 20 25 25 N 1.35850 * 110.15007 * 0.38922 * 21 20 19 26 26 H 0.97004 * 126.36363 * 179.76442 * 25 21 20 27 27 C 1.38188 * 107.26705 * 359.75832 * 25 21 20 28 28 C 1.38386 * 134.01681 * 179.97438 * 27 25 21 29 29 H 1.08994 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46678 * 300.00005 * 1 2 3 31 31 H 1.08994 * 109.46812 * 60.00113 * 1 2 3 32 32 H 1.09000 * 109.46678 * 239.99995 * 2 1 3 33 33 H 1.08994 * 109.46812 * 119.99887 * 2 1 3 34 34 H 0.96995 * 120.00570 * 180.02562 * 8 7 5 35 35 H 1.07996 * 119.75026 * 0.04683 * 17 16 14 36 36 H 1.08006 * 119.95627 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46761 * 0.27378 * 22 21 20 38 38 H 1.07998 * 120.21861 * 0.04637 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1434 0.8784 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0050 0.8812 1.3818 10 1 6.4417 2.1142 2.0850 11 1 6.4396 -0.3098 2.1550 12 1 6.6136 0.8416 0.0279 13 8 1.6559 2.0917 -1.2407 14 6 0.4682 2.7279 -1.2560 15 8 -0.2272 2.7403 -0.2598 16 6 0.0129 3.4101 -2.4817 17 6 0.8172 3.3964 -3.6302 18 6 0.4085 4.0229 -4.7679 19 6 -0.8235 4.6878 -4.7994 20 7 -1.4800 5.3873 -5.7569 21 6 -2.6166 5.8152 -5.2866 22 6 -3.6204 6.6280 -6.0631 23 9 -4.8353 5.9367 -6.1211 24 9 -3.8144 7.8595 -5.4283 25 7 -2.7637 5.4273 -3.9930 26 1 -3.5197 5.6211 -3.4169 27 6 -1.6363 4.7053 -3.6506 28 6 -1.2168 4.0673 -2.4964 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0611 2.9499 35 1 1.7681 2.8846 -3.6124 36 1 1.0350 4.0063 -5.6476 37 1 -3.2487 6.7950 -7.0740 38 1 -1.8377 4.0784 -1.6129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:07 Heat of formation + Delta-G solvation = -138.847213 kcal Electronic energy + Delta-G solvation = -26398.778241 eV Core-core repulsion = 22069.890508 eV Total energy + Delta-G solvation = -4328.887733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.27397 -48.27696 -43.49005 -41.39127 -38.58834 -37.46810 -35.49176 -34.59551 -33.37075 -31.88777 -31.37529 -29.43523 -28.33359 -25.52015 -24.58981 -23.82944 -22.56667 -22.40538 -21.44805 -19.82246 -19.26568 -18.81394 -18.56722 -18.32344 -17.84606 -17.64389 -17.10912 -16.77783 -16.44406 -16.36930 -15.74634 -15.13493 -15.12883 -14.95707 -14.75858 -14.61666 -14.32679 -14.08285 -13.85058 -13.42065 -13.30083 -13.15434 -12.93423 -12.84673 -12.78886 -12.70441 -12.55163 -12.13063 -12.12044 -11.75357 -11.55548 -11.45743 -11.33688 -10.81400 -10.52256 -9.83244 -9.50356 -8.26031 -6.42366 -0.81002 0.16839 0.96691 1.27719 1.43995 1.45124 1.56740 1.70865 1.88259 2.08592 2.42956 2.64230 2.95994 3.04086 3.17676 3.64790 3.68868 3.73208 3.77911 3.94188 4.02652 4.07246 4.38174 4.40188 4.42706 4.57986 4.81449 4.83561 4.95792 5.08424 5.12518 5.21670 5.22104 5.37655 5.49411 5.52864 5.67946 5.94959 5.96528 6.10843 6.32321 6.61557 6.93697 7.28498 8.80839 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028698 B = 0.002478 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.433790 B =11295.941147 C =11747.164693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.008 0.992 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.262 1.262 13 O -0.351 6.351 14 C 0.496 3.504 15 O -0.539 6.539 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.061 4.061 19 C 0.060 3.940 20 N -0.470 5.470 21 C 0.220 3.780 22 C 0.366 3.634 23 F -0.190 7.190 24 F -0.190 7.190 25 N -0.566 5.566 26 H 0.443 0.557 27 C 0.039 3.961 28 C -0.038 4.038 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.270 0.730 35 H 0.154 0.846 36 H 0.168 0.832 37 H 0.194 0.806 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 11.057 -17.717 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.026 0.974 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.186 1.186 13 O -0.267 6.267 14 C 0.342 3.658 15 O -0.432 6.432 16 C -0.108 4.108 17 C -0.094 4.094 18 C -0.080 4.080 19 C -0.060 4.060 20 N -0.192 5.192 21 C -0.049 4.049 22 C 0.311 3.689 23 F -0.171 7.171 24 F -0.172 7.172 25 N -0.178 5.178 26 H 0.285 0.715 27 C -0.071 4.071 28 C -0.059 4.059 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.210 0.790 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.920 11.075 -18.037 24.797 hybrid contribution -0.093 -0.233 2.136 2.151 sum -13.013 10.842 -15.901 23.232 Atomic orbital electron populations 1.21721 0.96415 1.00603 1.00049 1.21874 0.94355 0.98050 1.02494 1.20434 0.94643 0.89284 0.78379 0.97380 1.21325 0.90376 1.39833 1.06932 0.91317 1.25783 1.04121 0.93920 0.94418 1.70010 1.37416 1.38006 1.09866 0.85225 0.77842 0.77882 0.78743 1.19956 1.20188 1.18564 1.86512 1.34798 1.62793 1.42617 1.21413 0.80063 0.76239 0.88100 1.90766 1.56006 1.59776 1.36618 1.18924 0.96479 1.02757 0.92668 1.21074 1.00066 0.97784 0.90500 1.20182 0.93058 0.95574 0.99227 1.19467 0.96689 1.00418 0.89408 1.70221 1.04354 1.14429 1.30160 1.24469 0.96489 1.00363 0.83608 1.20073 0.77430 0.73798 0.97644 1.93082 1.46898 1.79839 1.97301 1.93081 1.95291 1.43653 1.85127 1.42794 1.18508 1.43883 1.12591 0.71470 1.18556 0.90240 1.01230 0.97090 1.19959 0.94877 0.94827 0.96222 0.92018 0.94498 0.94559 0.93339 0.89481 0.92070 0.82826 0.81483 0.78969 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.57 71.99 0.62 -5.09 16 2 C -0.13 -6.47 5.49 30.60 0.17 -6.30 16 3 C 0.23 12.14 2.25 29.85 0.07 12.20 16 4 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 5 C -0.55 -30.54 8.90 25.60 0.23 -30.31 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.92 -51.91 11.29 21.45 0.24 -51.67 16 9 Si 0.98 42.42 29.54 68.60 2.03 44.44 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 13 O -0.35 -16.55 9.03 -56.56 -0.51 -17.06 16 14 C 0.50 20.90 6.34 70.26 0.45 21.35 16 15 O -0.54 -25.20 13.51 19.82 0.27 -24.93 16 16 C -0.11 -3.41 5.88 -20.07 -0.12 -3.53 16 17 C -0.07 -2.00 9.53 22.27 0.21 -1.79 16 18 C -0.06 -1.40 10.03 22.22 0.22 -1.17 16 19 C 0.06 1.46 7.23 39.62 0.29 1.74 16 20 N -0.47 -10.02 11.26 -179.78 -2.03 -12.04 16 21 C 0.22 3.67 7.51 137.95 1.04 4.70 16 22 C 0.37 3.49 5.86 71.24 0.42 3.90 16 23 F -0.19 -2.23 17.32 44.97 0.78 -1.45 16 24 F -0.19 -2.26 17.32 44.97 0.78 -1.48 16 25 N -0.57 -9.86 6.23 -179.33 -1.12 -10.98 16 26 H 0.44 5.19 8.96 -92.71 -0.83 4.36 16 27 C 0.04 0.93 7.29 38.79 0.28 1.21 16 28 C -0.04 -1.05 9.61 22.59 0.22 -0.83 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.70 7.79 -2.39 -0.02 1.68 16 31 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 4.75 5.95 -2.39 -0.01 4.73 16 34 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.15 4.11 7.58 -2.91 -0.02 4.09 16 36 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.19 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.14 3.83 7.63 -2.91 -0.02 3.81 16 Total: -1.00 -69.06 336.33 5.28 -63.78 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.31 Total: 13.92 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.53 Total: -2.53 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -2.90 Total: -74.69 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.24 Total: -42.00 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 1.56 Total: -2.93 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -69.06 5.28 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.064 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds