Wall clock time and date at job start Tue Mar 31 2020 14:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.46712 * 124.99960 * 3 2 1 5 5 C 1.46490 * 120.00116 * 269.99457 * 4 3 2 6 6 C 1.50700 * 109.47658 * 270.00501 * 5 4 3 7 7 H 1.07996 * 119.99523 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00465 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99866 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00173 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46716 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.46931 * 119.99519 * 10 8 6 13 13 H 1.48493 * 109.47144 * 239.99755 * 10 8 6 14 14 C 1.34777 * 119.99880 * 90.00210 * 4 3 2 15 15 S 1.71198 * 120.00059 * 179.97438 * 14 4 3 16 16 N 1.34786 * 119.99934 * 0.26803 * 14 4 3 17 17 C 1.46497 * 119.99732 * 179.72747 * 16 14 4 18 18 H 1.08994 * 109.47217 * 35.00282 * 17 16 14 19 19 C 1.52999 * 109.47140 * 274.99762 * 17 16 14 20 20 C 1.53007 * 109.46885 * 65.00565 * 19 17 16 21 21 C 1.50703 * 109.47051 * 155.00439 * 17 16 14 22 22 C 1.33386 * 125.20159 * 219.71750 * 21 17 16 23 23 C 1.38427 * 114.91875 * 179.85511 * 22 21 17 24 24 C 1.33386 * 114.92321 * 0.43217 * 23 22 21 25 25 S 1.75883 * 125.20269 * 40.01787 * 21 17 16 26 26 H 1.08005 * 119.99774 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00030 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99516 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47209 * 4.99878 * 3 2 1 30 30 H 1.08996 * 109.46809 * 244.99612 * 3 2 1 31 31 H 1.09006 * 109.47111 * 30.00661 * 5 4 3 32 32 H 1.08996 * 109.46935 * 150.00202 * 5 4 3 33 33 H 0.96996 * 119.99853 * 180.02562 * 9 8 6 34 34 H 0.97000 * 119.99685 * 359.73172 * 16 14 4 35 35 H 1.08997 * 109.47370 * 185.00027 * 19 17 16 36 36 H 1.08998 * 109.47493 * 305.00829 * 19 17 16 37 37 H 1.09005 * 109.46890 * 299.99981 * 20 19 17 38 38 H 1.08998 * 109.47214 * 59.99472 * 20 19 17 39 39 H 1.09001 * 109.47104 * 179.97438 * 20 19 17 40 40 H 1.07997 * 122.53854 * 0.02562 * 22 21 17 41 41 H 1.07996 * 122.54088 * 180.20486 * 23 22 21 42 42 H 1.07996 * 125.20617 * 179.74777 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8369 1.6369 8 6 2.5193 4.0665 3.6086 9 7 1.9599 3.4657 4.6361 10 14 2.8737 5.8993 3.6778 11 1 3.5025 6.3302 2.4033 12 1 1.6035 6.6418 3.8795 13 1 3.7973 6.1827 4.8055 14 6 4.2497 0.8662 0.9825 15 16 5.3370 0.8980 2.3045 16 7 4.6515 0.3809 -0.2091 17 6 6.0186 -0.1198 -0.3727 18 1 6.3430 -0.5988 0.5510 19 6 6.9534 1.0469 -0.6979 20 6 7.0123 2.0015 0.4964 21 6 6.0553 -1.1216 -1.4979 22 6 6.7630 -2.2522 -1.4980 23 6 6.6376 -3.0187 -2.6438 24 6 5.8352 -2.5061 -3.5780 25 16 5.1776 -0.9750 -3.0150 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 1.4887 1.6966 2.5459 32 1 3.0990 1.3603 3.2259 33 1 1.7310 3.9744 5.4296 34 1 4.0356 0.3632 -0.9582 35 1 7.9525 0.6645 -0.9069 36 1 6.5785 1.5804 -1.5713 37 1 6.0131 2.3838 0.7055 38 1 7.3872 1.4679 1.3699 39 1 7.6787 2.8324 0.2649 40 1 7.3844 -2.5486 -0.6659 41 1 7.1533 -3.9587 -2.7733 42 1 5.6222 -2.9613 -4.5339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793246635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:37 Heat of formation + Delta-G solvation = 83.232581 kcal Electronic energy + Delta-G solvation = -23219.227706 eV Core-core repulsion = 20032.396428 eV Total energy + Delta-G solvation = -3186.831278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.47584 -38.10609 -36.37618 -33.73103 -32.89791 -31.65325 -30.20625 -27.74397 -26.91503 -25.59065 -23.45838 -23.00735 -21.63163 -21.04753 -20.00984 -19.33408 -18.05781 -17.19683 -16.60967 -16.09943 -15.61155 -15.24549 -14.87368 -14.76264 -14.28673 -14.06279 -13.58776 -13.26532 -13.06561 -12.79888 -12.67458 -12.57501 -12.17163 -12.03353 -11.58398 -11.41652 -11.29491 -11.20216 -11.05607 -10.87447 -10.84207 -10.69052 -10.61995 -10.15640 -10.07193 -9.66414 -9.38432 -8.88868 -8.70718 -8.42421 -8.21090 -6.67775 -6.15737 -6.02647 -4.06389 0.74863 1.36055 1.75442 2.12101 2.25154 2.50343 2.82484 3.32127 3.37022 3.41200 3.44904 3.90954 4.44147 4.47155 4.83232 4.90999 5.11154 5.15524 5.23641 5.25503 5.33249 5.33568 5.37930 5.66655 5.74741 5.84150 5.91019 5.94123 6.03595 6.13971 6.21602 6.42899 6.43753 6.58060 6.66182 6.70728 6.76496 7.20308 7.23727 7.50073 7.59661 7.92552 8.00697 8.17561 8.92492 9.56314 11.05586 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.004123 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.896735 B = 6789.596453 C = 7765.105166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C 0.120 3.880 4 N -0.536 5.536 5 C 0.240 3.760 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.282 1.282 14 C 0.557 3.443 15 S -0.635 6.635 16 N -0.702 5.702 17 C 0.221 3.779 18 H 0.130 0.870 19 C -0.120 4.120 20 C -0.147 4.147 21 C -0.178 4.178 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.213 4.213 25 S 0.089 5.911 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.263 0.737 34 H 0.387 0.613 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -11.387 -17.915 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C -0.006 4.006 4 N -0.241 5.241 5 C 0.121 3.879 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.135 4.135 9 N -0.529 5.529 10 Si 0.726 3.274 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.207 1.207 14 C 0.198 3.802 15 S -0.505 6.505 16 N -0.338 5.338 17 C 0.114 3.886 18 H 0.148 0.852 19 C -0.160 4.160 20 C -0.205 4.205 21 C -0.296 4.296 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.349 4.349 25 S 0.352 5.648 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.533 -10.231 -17.447 20.532 hybrid contribution 0.174 -0.127 -0.581 0.620 sum 3.707 -10.358 -18.028 21.120 Atomic orbital electron populations 1.23878 0.95624 1.02166 0.98806 1.23259 0.96587 0.98270 1.01473 1.20857 0.93481 0.96862 0.89400 1.47808 1.07042 1.54589 1.14661 1.19928 0.95710 0.94902 0.77327 1.21165 1.40803 0.92136 1.01495 0.92572 1.24811 0.94944 0.98570 0.95144 1.69932 1.41847 1.36000 1.05090 0.86449 0.77775 0.84985 0.78234 1.19910 1.21195 1.20746 1.22162 0.87542 0.81349 0.89125 1.93031 1.47138 1.77344 1.32948 1.45078 1.14241 1.64211 1.10286 1.19745 0.81058 0.91956 0.95867 0.85216 1.21958 0.98393 0.95954 0.99657 1.22386 1.03193 0.97714 0.97204 1.24807 1.04748 1.00956 0.99048 1.20143 1.02016 0.93661 0.99948 1.20189 1.00821 1.01637 0.93480 1.25605 1.05234 0.99612 1.04450 1.84263 1.48545 1.21150 1.10795 0.88299 0.87986 0.87555 0.87970 0.91193 0.94616 0.90380 0.92760 0.77483 0.91144 0.92740 0.91099 0.89780 0.94999 0.83697 0.84094 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 14.32 29.01 0.42 -1.58 16 2 C -0.18 -2.37 9.85 -36.03 -0.35 -2.73 16 3 C 0.12 1.84 5.62 -5.19 -0.03 1.81 16 4 N -0.54 -10.65 2.44 -178.47 -0.44 -11.08 16 5 C 0.24 5.95 4.92 -5.20 -0.03 5.92 16 6 C -0.52 -14.04 9.39 -34.44 -0.32 -14.36 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.56 10.80 6.44 -86.91 -0.56 10.24 16 15 S -0.63 -14.66 21.90 -107.50 -2.35 -17.02 16 16 N -0.70 -10.61 4.88 -56.65 -0.28 -10.89 16 17 C 0.22 3.03 2.64 -69.08 -0.18 2.85 16 18 H 0.13 2.01 6.80 -51.93 -0.35 1.66 16 19 C -0.12 -1.64 5.59 -26.73 -0.15 -1.79 16 20 C -0.15 -2.50 8.09 37.16 0.30 -2.20 16 21 C -0.18 -2.03 5.45 -36.00 -0.20 -2.22 16 22 C -0.13 -1.29 10.04 -41.21 -0.41 -1.71 16 23 C -0.13 -1.14 10.18 -41.21 -0.42 -1.56 16 24 C -0.21 -1.83 11.23 29.04 0.33 -1.50 16 25 S 0.09 0.88 22.31 -107.50 -2.40 -1.51 16 26 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 27 H 0.10 1.18 7.84 -52.48 -0.41 0.77 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.10 1.61 7.72 -51.93 -0.40 1.20 16 30 H 0.07 0.91 6.36 -51.93 -0.33 0.58 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.08 2.21 6.58 -51.93 -0.34 1.87 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.39 5.13 5.40 -40.82 -0.22 4.91 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.45 5.29 -44.13 -0.23 1.21 16 38 H 0.08 1.55 6.48 -47.87 -0.31 1.24 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -31.29 366.26 -11.89 -43.18 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.95 Total: 7.28 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.71 Total: -7.02 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.02 Total: -47.19 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -13.78 SS G_CDS: -4.75 Total: -18.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.29 -11.89 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.409 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds