Wall clock time and date at job start Tue Mar 31 2020 14:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.46712 * 124.99960 * 3 2 1 5 5 C 1.46490 * 120.00116 * 269.99457 * 4 3 2 6 6 C 1.50700 * 109.47658 * 270.00501 * 5 4 3 7 7 H 1.07996 * 119.99523 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00465 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99866 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00173 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46716 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.46931 * 119.99519 * 10 8 6 13 13 H 1.48493 * 109.47144 * 239.99755 * 10 8 6 14 14 C 1.34777 * 119.99880 * 90.00210 * 4 3 2 15 15 S 1.71198 * 120.00059 * 179.97438 * 14 4 3 16 16 N 1.34786 * 119.99934 * 0.26803 * 14 4 3 17 17 C 1.46497 * 119.99732 * 179.72747 * 16 14 4 18 18 H 1.08994 * 109.47217 * 35.00282 * 17 16 14 19 19 C 1.52999 * 109.47140 * 274.99762 * 17 16 14 20 20 C 1.53007 * 109.46885 * 65.00565 * 19 17 16 21 21 C 1.50703 * 109.47051 * 155.00439 * 17 16 14 22 22 C 1.33386 * 125.20159 * 219.71750 * 21 17 16 23 23 C 1.38427 * 114.91875 * 179.85511 * 22 21 17 24 24 C 1.33386 * 114.92321 * 0.43217 * 23 22 21 25 25 S 1.75883 * 125.20269 * 40.01787 * 21 17 16 26 26 H 1.08005 * 119.99774 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00030 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99516 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47209 * 4.99878 * 3 2 1 30 30 H 1.08996 * 109.46809 * 244.99612 * 3 2 1 31 31 H 1.09006 * 109.47111 * 30.00661 * 5 4 3 32 32 H 1.08996 * 109.46935 * 150.00202 * 5 4 3 33 33 H 0.96996 * 119.99853 * 180.02562 * 9 8 6 34 34 H 0.97000 * 119.99685 * 359.73172 * 16 14 4 35 35 H 1.08997 * 109.47370 * 185.00027 * 19 17 16 36 36 H 1.08998 * 109.47493 * 305.00829 * 19 17 16 37 37 H 1.09005 * 109.46890 * 299.99981 * 20 19 17 38 38 H 1.08998 * 109.47214 * 59.99472 * 20 19 17 39 39 H 1.09001 * 109.47104 * 179.97438 * 20 19 17 40 40 H 1.07997 * 122.53854 * 0.02562 * 22 21 17 41 41 H 1.07996 * 122.54088 * 180.20486 * 23 22 21 42 42 H 1.07996 * 125.20617 * 179.74777 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8369 1.6369 8 6 2.5193 4.0665 3.6086 9 7 1.9599 3.4657 4.6361 10 14 2.8737 5.8993 3.6778 11 1 3.5025 6.3302 2.4033 12 1 1.6035 6.6418 3.8795 13 1 3.7973 6.1827 4.8055 14 6 4.2497 0.8662 0.9825 15 16 5.3370 0.8980 2.3045 16 7 4.6515 0.3809 -0.2091 17 6 6.0186 -0.1198 -0.3727 18 1 6.3430 -0.5988 0.5510 19 6 6.9534 1.0469 -0.6979 20 6 7.0123 2.0015 0.4964 21 6 6.0553 -1.1216 -1.4979 22 6 6.7630 -2.2522 -1.4980 23 6 6.6376 -3.0187 -2.6438 24 6 5.8352 -2.5061 -3.5780 25 16 5.1776 -0.9750 -3.0150 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 1.4887 1.6966 2.5459 32 1 3.0990 1.3603 3.2259 33 1 1.7310 3.9744 5.4296 34 1 4.0356 0.3632 -0.9582 35 1 7.9525 0.6645 -0.9069 36 1 6.5785 1.5804 -1.5713 37 1 6.0131 2.3838 0.7055 38 1 7.3872 1.4679 1.3699 39 1 7.6787 2.8324 0.2649 40 1 7.3844 -2.5486 -0.6659 41 1 7.1533 -3.9587 -2.7733 42 1 5.6222 -2.9613 -4.5339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793246635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:37 Heat of formation + Delta-G solvation = 67.072360 kcal Electronic energy + Delta-G solvation = -23219.928465 eV Core-core repulsion = 20032.396428 eV Total energy + Delta-G solvation = -3187.532038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86162 -39.10817 -37.54547 -35.18718 -34.57239 -33.19040 -31.20097 -29.50753 -28.16640 -26.89337 -24.99883 -24.19425 -23.03792 -22.35926 -21.09835 -20.23049 -19.24282 -18.61798 -18.49118 -17.43675 -16.64341 -16.38766 -16.37425 -16.17453 -15.88005 -15.44251 -14.72586 -14.51844 -14.22141 -14.15760 -13.67386 -13.58446 -13.44304 -13.37568 -13.12653 -12.91008 -12.73079 -12.65347 -12.51923 -12.36379 -12.25358 -12.19030 -12.04244 -11.73021 -11.60271 -11.49580 -10.59355 -10.48242 -9.83177 -9.62200 -9.43944 -8.47341 -8.16095 -7.94657 -6.27348 -0.01659 0.57162 0.61774 0.97346 1.02840 1.35163 1.37919 1.42483 1.51484 1.72655 1.94882 2.39947 2.53412 3.16216 3.45777 3.76945 3.94285 4.01927 4.12531 4.18616 4.25159 4.45571 4.54832 4.58959 4.68270 4.69896 4.85370 4.92250 4.93418 5.09231 5.11405 5.19272 5.26502 5.33815 5.38001 5.53308 5.57352 5.64293 5.67838 5.76213 5.81449 5.99210 6.06607 6.45219 6.77550 7.38815 8.91033 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.004123 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.896735 B = 6789.596453 C = 7765.105166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.195 4.195 3 C 0.117 3.883 4 N -0.542 5.542 5 C 0.261 3.739 6 C -0.521 4.521 7 H 0.048 0.952 8 C 0.019 3.981 9 N -0.923 5.923 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.271 1.271 13 H -0.286 1.286 14 C 0.577 3.423 15 S -0.718 6.718 16 N -0.677 5.677 17 C 0.225 3.775 18 H 0.109 0.891 19 C -0.111 4.111 20 C -0.138 4.138 21 C -0.206 4.206 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.200 4.200 25 S 0.088 5.912 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -12.238 -21.188 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.214 4.214 3 C -0.007 4.007 4 N -0.246 5.246 5 C 0.141 3.859 6 C -0.560 4.560 7 H 0.066 0.934 8 C -0.181 4.181 9 N -0.563 5.563 10 Si 0.784 3.216 11 H -0.195 1.195 12 H -0.196 1.196 13 H -0.212 1.212 14 C 0.215 3.785 15 S -0.589 6.589 16 N -0.312 5.312 17 C 0.118 3.882 18 H 0.126 0.874 19 C -0.150 4.150 20 C -0.196 4.196 21 C -0.323 4.323 22 C -0.152 4.152 23 C -0.169 4.169 24 C -0.336 4.336 25 S 0.351 5.649 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.168 0.832 41 H 0.184 0.816 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.200 -11.102 -20.798 23.792 hybrid contribution 0.240 0.029 0.306 0.390 sum 3.439 -11.073 -20.492 23.545 Atomic orbital electron populations 1.24137 0.95135 1.03476 0.95843 1.23104 0.97059 0.97164 1.04090 1.21112 0.93076 0.98108 0.88397 1.47592 1.07909 1.54475 1.14610 1.19283 0.94354 0.93589 0.78719 1.21354 1.40117 0.93323 1.01207 0.93358 1.25594 0.94852 1.02771 0.94877 1.70036 1.42946 1.37620 1.05657 0.85497 0.77951 0.80169 0.77933 1.19513 1.19632 1.21235 1.21649 0.86531 0.80994 0.89335 1.93179 1.49114 1.80296 1.36328 1.45055 1.15241 1.61963 1.08912 1.19664 0.79734 0.92505 0.96298 0.87375 1.21879 0.99737 0.95223 0.98163 1.22143 1.00894 0.98500 0.98025 1.24468 1.07208 1.01284 0.99359 1.20410 1.01012 0.93093 1.00653 1.20431 1.01219 1.02495 0.92777 1.26007 1.03894 0.98367 1.05288 1.84232 1.48448 1.22431 1.09745 0.86065 0.87581 0.87321 0.88329 0.88754 0.95490 0.94266 0.92609 0.75873 0.88888 0.91710 0.94749 0.91847 0.94164 0.83173 0.81585 0.79162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 14.32 67.77 0.97 -2.24 16 2 C -0.19 -4.93 9.85 25.64 0.25 -4.68 16 3 C 0.12 3.50 5.62 85.63 0.48 3.98 16 4 N -0.54 -21.91 2.44 -718.54 -1.75 -23.67 16 5 C 0.26 13.46 4.92 85.63 0.42 13.88 16 6 C -0.52 -29.04 9.39 25.60 0.24 -28.80 16 7 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.05 5.46 84.65 0.46 1.51 16 9 N -0.92 -55.12 13.29 21.45 0.28 -54.84 16 10 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 14 C 0.58 23.00 6.44 179.05 1.15 24.16 16 15 S -0.72 -35.16 21.90 -56.49 -1.24 -36.40 16 16 N -0.68 -20.25 4.88 -333.15 -1.63 -21.88 16 17 C 0.22 6.07 2.64 44.25 0.12 6.18 16 18 H 0.11 3.46 6.80 -2.39 -0.02 3.45 16 19 C -0.11 -2.94 5.59 30.60 0.17 -2.77 16 20 C -0.14 -4.82 8.09 71.98 0.58 -4.24 16 21 C -0.21 -4.32 5.45 24.59 0.13 -4.19 16 22 C -0.12 -2.18 10.04 21.22 0.21 -1.97 16 23 C -0.14 -1.95 10.18 21.22 0.22 -1.74 16 24 C -0.20 -2.66 11.23 66.72 0.75 -1.91 16 25 S 0.09 1.50 22.31 -56.49 -1.26 0.24 16 26 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 27 H 0.11 2.23 7.84 -2.91 -0.02 2.20 16 28 H 0.11 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.10 3.02 7.72 -2.39 -0.02 3.00 16 30 H 0.09 2.29 6.36 -2.39 -0.02 2.28 16 31 H 0.03 1.43 8.07 -2.38 -0.02 1.41 16 32 H 0.04 2.35 6.58 -2.39 -0.02 2.33 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.40 10.06 5.40 -92.71 -0.50 9.56 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.03 1.44 5.29 -7.34 -0.04 1.40 16 38 H 0.06 2.47 6.48 -4.97 -0.03 2.44 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -71.28 366.26 3.07 -68.21 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.47 Total: 23.82 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.16 Total: -2.82 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -3.09 Total: -100.38 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: -33.66 SS G_CDS: -2.50 Total: -36.16 kcal Total: -71.28 3.07 -68.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.282 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds