Wall clock time and date at job start Tue Mar 31 2020 14:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99994 * 2 1 4 4 N 1.46500 * 109.47520 * 124.99723 * 3 2 1 5 5 C 1.46499 * 119.99713 * 270.00132 * 4 3 2 6 6 C 1.50705 * 109.47203 * 269.99740 * 5 4 3 7 7 H 1.07998 * 119.99535 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00126 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47569 * 89.99925 * 10 8 6 12 12 H 1.48504 * 109.47231 * 209.99686 * 10 8 6 13 13 H 1.48497 * 109.47284 * 329.99647 * 10 8 6 14 14 C 1.34771 * 120.00158 * 89.99511 * 4 3 2 15 15 S 1.71204 * 119.99965 * 179.97438 * 14 4 3 16 16 N 1.34779 * 119.99969 * 0.02562 * 14 4 3 17 17 C 1.46503 * 119.99625 * 179.97438 * 16 14 4 18 18 H 1.08995 * 109.47502 * 324.99874 * 17 16 14 19 19 C 1.52996 * 109.47069 * 85.00197 * 17 16 14 20 20 C 1.52994 * 109.47132 * 294.99706 * 19 17 16 21 21 C 1.50706 * 109.46656 * 204.99810 * 17 16 14 22 22 C 1.33391 * 125.19937 * 140.00322 * 21 17 16 23 23 C 1.38423 * 114.92045 * 179.97438 * 22 21 17 24 24 C 1.33390 * 114.91979 * 359.97438 * 23 22 21 25 25 S 1.75878 * 125.20693 * 319.69582 * 21 17 16 26 26 H 1.07998 * 119.99734 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00275 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00164 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47095 * 4.99476 * 3 2 1 30 30 H 1.09003 * 109.46927 * 244.99613 * 3 2 1 31 31 H 1.09002 * 109.47644 * 30.00030 * 5 4 3 32 32 H 1.08995 * 109.47411 * 149.99726 * 5 4 3 33 33 H 0.96999 * 119.99988 * 180.02562 * 9 8 6 34 34 H 0.96993 * 119.99793 * 359.97438 * 16 14 4 35 35 H 1.09004 * 109.47171 * 54.99559 * 19 17 16 36 36 H 1.08997 * 109.47482 * 174.99491 * 19 17 16 37 37 H 1.09004 * 109.46972 * 299.99974 * 20 19 17 38 38 H 1.09008 * 109.47415 * 59.99958 * 20 19 17 39 39 H 1.09001 * 109.47210 * 179.97438 * 20 19 17 40 40 H 1.07995 * 122.54101 * 359.97438 * 22 21 17 41 41 H 1.08001 * 122.53959 * 180.02562 * 23 22 21 42 42 H 1.07999 * 125.20202 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3439 2.4803 7 1 3.3031 3.8372 1.6363 8 6 2.5191 4.0668 3.6084 9 7 1.9596 3.4661 4.6359 10 14 2.8721 5.8998 3.6768 11 1 1.6988 6.6497 3.1608 12 1 3.1368 6.3009 5.0820 13 1 4.0615 6.2064 2.8422 14 6 4.2496 0.8663 0.9825 15 16 5.3369 0.8983 2.3046 16 7 4.6499 0.3762 -0.2075 17 6 6.0153 -0.1296 -0.3694 18 1 6.6982 0.4683 0.2340 19 6 6.0760 -1.5888 0.0865 20 6 5.7912 -1.6664 1.5876 21 6 6.4156 -0.0392 -1.8195 22 6 7.6187 0.3279 -2.2636 23 6 7.7543 0.3363 -3.6412 24 6 6.6616 -0.0247 -4.3157 25 16 5.3706 -0.4092 -3.1849 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.4886 1.6968 2.5459 32 1 3.0987 1.3606 3.2260 33 1 1.7306 3.9748 5.4294 34 1 4.0340 0.3584 -0.9566 35 1 5.3300 -2.1701 -0.4555 36 1 7.0682 -1.9918 -0.1164 37 1 6.5372 -1.0850 2.1295 38 1 4.7988 -1.2633 1.7905 39 1 5.8340 -2.7060 1.9124 40 1 8.4257 0.5982 -1.5988 41 1 8.6754 0.6132 -4.1325 42 1 6.5828 -0.0759 -5.3916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793246637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:40 Heat of formation + Delta-G solvation = 83.274476 kcal Electronic energy + Delta-G solvation = -23183.671192 eV Core-core repulsion = 19996.841730 eV Total energy + Delta-G solvation = -3186.829461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48016 -38.09746 -36.38042 -33.74342 -32.90053 -31.67460 -30.22373 -27.74597 -26.92769 -25.57981 -23.44598 -23.05174 -21.64449 -21.05570 -20.02055 -19.31934 -18.07649 -17.17788 -16.58905 -16.08238 -15.60512 -15.21276 -15.10246 -14.68783 -14.31081 -13.97010 -13.62320 -13.22518 -13.11720 -12.81747 -12.72341 -12.53556 -12.21820 -11.96398 -11.63053 -11.39178 -11.33304 -11.27828 -11.07058 -10.86977 -10.84070 -10.70755 -10.66292 -10.14505 -10.09997 -9.67655 -9.39512 -8.87999 -8.69589 -8.42479 -8.19065 -6.77345 -6.09860 -6.01144 -4.06023 0.75984 1.37010 1.76152 2.12213 2.24057 2.52437 2.82427 3.32137 3.37427 3.40354 3.46109 3.91095 4.43903 4.47724 4.84505 4.90736 5.10006 5.13701 5.23365 5.25854 5.30986 5.33563 5.38473 5.63841 5.74284 5.83501 5.90525 5.92684 6.01463 6.12348 6.22764 6.33131 6.42117 6.56863 6.60554 6.68626 6.72957 7.10913 7.21123 7.49841 7.59612 7.92822 8.00736 8.17929 8.92561 9.56588 11.05912 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.004079 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.027288 B = 6863.475212 C = 7208.911139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.120 3.880 4 N -0.536 5.536 5 C 0.240 3.760 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.283 1.283 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.557 3.443 15 S -0.636 6.636 16 N -0.702 5.702 17 C 0.221 3.779 18 H 0.131 0.869 19 C -0.119 4.119 20 C -0.145 4.145 21 C -0.179 4.179 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.213 4.213 25 S 0.088 5.912 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.263 0.737 34 H 0.387 0.613 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.401 -10.138 -18.307 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C -0.007 4.007 4 N -0.241 5.241 5 C 0.122 3.878 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.134 4.134 9 N -0.529 5.529 10 Si 0.726 3.274 11 H -0.209 1.209 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.199 3.801 15 S -0.505 6.505 16 N -0.338 5.338 17 C 0.113 3.887 18 H 0.148 0.852 19 C -0.159 4.159 20 C -0.203 4.203 21 C -0.296 4.296 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.349 4.349 25 S 0.351 5.649 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.225 0.775 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.495 -10.507 -17.382 20.609 hybrid contribution 0.682 1.473 -1.063 1.940 sum 4.177 -9.034 -18.444 20.958 Atomic orbital electron populations 1.23877 0.95629 1.02183 0.98739 1.23260 0.96594 0.98253 1.01547 1.20870 0.93494 0.96862 0.89436 1.47808 1.07128 1.54485 1.14684 1.19923 0.95691 0.94882 0.77318 1.21132 1.40901 0.92164 1.01486 0.92655 1.24806 0.94941 0.98578 0.95121 1.69920 1.41787 1.36084 1.05106 0.86499 0.78470 0.85001 0.77467 1.20912 1.21027 1.19863 1.22160 0.87716 0.81182 0.89051 1.93026 1.47691 1.77203 1.32598 1.45079 1.14343 1.63835 1.10522 1.19742 0.83519 0.97038 0.88360 0.85200 1.21938 1.01699 0.93582 0.98653 1.22377 1.04986 0.99401 0.93527 1.24796 0.98257 1.08346 0.98251 1.20156 0.97520 1.02441 0.95544 1.20194 0.99506 1.02860 0.93534 1.25602 0.96740 1.09448 1.03061 1.84217 1.16723 1.67136 0.96807 0.88283 0.87984 0.87559 0.87964 0.91138 0.94618 0.90359 0.92701 0.77476 0.92743 0.91060 0.89651 0.91658 0.95022 0.83671 0.84069 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 14.32 29.01 0.42 -1.56 16 2 C -0.18 -2.35 9.85 -36.03 -0.35 -2.71 16 3 C 0.12 1.84 5.61 -5.19 -0.03 1.81 16 4 N -0.54 -10.67 2.44 -178.46 -0.44 -11.11 16 5 C 0.24 5.98 4.92 -5.19 -0.03 5.95 16 6 C -0.52 -14.17 9.39 -34.44 -0.32 -14.49 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.56 10.84 6.44 -86.92 -0.56 10.28 16 15 S -0.64 -14.71 21.91 -107.50 -2.36 -17.07 16 16 N -0.70 -10.62 4.88 -56.65 -0.28 -10.90 16 17 C 0.22 3.03 2.64 -69.08 -0.18 2.84 16 18 H 0.13 2.07 6.79 -51.93 -0.35 1.71 16 19 C -0.12 -1.53 5.59 -26.74 -0.15 -1.68 16 20 C -0.15 -2.27 8.09 37.15 0.30 -1.97 16 21 C -0.18 -2.08 5.44 -36.00 -0.20 -2.27 16 22 C -0.13 -1.33 10.04 -41.21 -0.41 -1.74 16 23 C -0.13 -1.18 10.18 -41.21 -0.42 -1.60 16 24 C -0.21 -1.87 11.23 29.04 0.33 -1.55 16 25 S 0.09 0.88 22.32 -107.50 -2.40 -1.52 16 26 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 27 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 28 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.10 1.61 7.72 -51.93 -0.40 1.21 16 30 H 0.07 0.93 6.36 -51.93 -0.33 0.60 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.08 2.21 6.58 -51.93 -0.34 1.87 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 34 H 0.39 5.14 5.42 -40.82 -0.22 4.92 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.49 6.49 -47.94 -0.31 1.18 16 38 H 0.06 1.20 5.29 -44.24 -0.23 0.96 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -31.50 366.29 -11.89 -43.39 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.95 Total: 6.99 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.71 Total: -6.88 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.02 Total: -47.30 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -13.83 SS G_CDS: -4.75 Total: -18.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.50 -11.89 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.660 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds