Wall clock time and date at job start Tue Mar 31 2020 14:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99994 * 2 1 4 4 N 1.46500 * 109.47520 * 124.99723 * 3 2 1 5 5 C 1.46499 * 119.99713 * 270.00132 * 4 3 2 6 6 C 1.50705 * 109.47203 * 269.99740 * 5 4 3 7 7 H 1.07998 * 119.99535 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00126 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47569 * 89.99925 * 10 8 6 12 12 H 1.48504 * 109.47231 * 209.99686 * 10 8 6 13 13 H 1.48497 * 109.47284 * 329.99647 * 10 8 6 14 14 C 1.34771 * 120.00158 * 89.99511 * 4 3 2 15 15 S 1.71204 * 119.99965 * 179.97438 * 14 4 3 16 16 N 1.34779 * 119.99969 * 0.02562 * 14 4 3 17 17 C 1.46503 * 119.99625 * 179.97438 * 16 14 4 18 18 H 1.08995 * 109.47502 * 324.99874 * 17 16 14 19 19 C 1.52996 * 109.47069 * 85.00197 * 17 16 14 20 20 C 1.52994 * 109.47132 * 294.99706 * 19 17 16 21 21 C 1.50706 * 109.46656 * 204.99810 * 17 16 14 22 22 C 1.33391 * 125.19937 * 140.00322 * 21 17 16 23 23 C 1.38423 * 114.92045 * 179.97438 * 22 21 17 24 24 C 1.33390 * 114.91979 * 359.97438 * 23 22 21 25 25 S 1.75878 * 125.20693 * 319.69582 * 21 17 16 26 26 H 1.07998 * 119.99734 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00275 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00164 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47095 * 4.99476 * 3 2 1 30 30 H 1.09003 * 109.46927 * 244.99613 * 3 2 1 31 31 H 1.09002 * 109.47644 * 30.00030 * 5 4 3 32 32 H 1.08995 * 109.47411 * 149.99726 * 5 4 3 33 33 H 0.96999 * 119.99988 * 180.02562 * 9 8 6 34 34 H 0.96993 * 119.99793 * 359.97438 * 16 14 4 35 35 H 1.09004 * 109.47171 * 54.99559 * 19 17 16 36 36 H 1.08997 * 109.47482 * 174.99491 * 19 17 16 37 37 H 1.09004 * 109.46972 * 299.99974 * 20 19 17 38 38 H 1.09008 * 109.47415 * 59.99958 * 20 19 17 39 39 H 1.09001 * 109.47210 * 179.97438 * 20 19 17 40 40 H 1.07995 * 122.54101 * 359.97438 * 22 21 17 41 41 H 1.08001 * 122.53959 * 180.02562 * 23 22 21 42 42 H 1.07999 * 125.20202 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3439 2.4803 7 1 3.3031 3.8372 1.6363 8 6 2.5191 4.0668 3.6084 9 7 1.9596 3.4661 4.6359 10 14 2.8721 5.8998 3.6768 11 1 1.6988 6.6497 3.1608 12 1 3.1368 6.3009 5.0820 13 1 4.0615 6.2064 2.8422 14 6 4.2496 0.8663 0.9825 15 16 5.3369 0.8983 2.3046 16 7 4.6499 0.3762 -0.2075 17 6 6.0153 -0.1296 -0.3694 18 1 6.6982 0.4683 0.2340 19 6 6.0760 -1.5888 0.0865 20 6 5.7912 -1.6664 1.5876 21 6 6.4156 -0.0392 -1.8195 22 6 7.6187 0.3279 -2.2636 23 6 7.7543 0.3363 -3.6412 24 6 6.6616 -0.0247 -4.3157 25 16 5.3706 -0.4092 -3.1849 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.4886 1.6968 2.5459 32 1 3.0987 1.3606 3.2260 33 1 1.7306 3.9748 5.4294 34 1 4.0340 0.3584 -0.9566 35 1 5.3300 -2.1701 -0.4555 36 1 7.0682 -1.9918 -0.1164 37 1 6.5372 -1.0850 2.1295 38 1 4.7988 -1.2633 1.7905 39 1 5.8340 -2.7060 1.9124 40 1 8.4257 0.5982 -1.5988 41 1 8.6754 0.6132 -4.1325 42 1 6.5828 -0.0759 -5.3916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793246637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:39 Heat of formation + Delta-G solvation = 66.966324 kcal Electronic energy + Delta-G solvation = -23184.378366 eV Core-core repulsion = 19996.841730 eV Total energy + Delta-G solvation = -3187.536636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86500 -39.11210 -37.54812 -35.18650 -34.57650 -33.18486 -31.20972 -29.51142 -28.17423 -26.87308 -25.01692 -24.20380 -23.03874 -22.34489 -21.10444 -20.22938 -19.27902 -18.62886 -18.43552 -17.44436 -16.63007 -16.43735 -16.37796 -16.24453 -15.88997 -15.28866 -14.78811 -14.50797 -14.22198 -14.14765 -13.72867 -13.61461 -13.44268 -13.37770 -13.06513 -12.92830 -12.74553 -12.61049 -12.52436 -12.38234 -12.22526 -12.16060 -12.07631 -11.73775 -11.63432 -11.50773 -10.59100 -10.48107 -9.81819 -9.62256 -9.44158 -8.56558 -8.17391 -7.86832 -6.27877 -0.02656 0.56920 0.61268 0.97078 1.01809 1.35215 1.38045 1.42414 1.51397 1.71873 1.94317 2.40029 2.53411 3.15807 3.45440 3.77018 3.94310 4.02257 4.12884 4.18852 4.24519 4.45765 4.54841 4.58669 4.68863 4.69010 4.85049 4.92616 4.94397 5.09474 5.11570 5.18528 5.26486 5.32917 5.37143 5.52205 5.57374 5.64100 5.67944 5.75527 5.81411 5.98947 6.06344 6.45170 6.76732 7.38332 8.90566 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.004079 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.027288 B = 6863.475212 C = 7208.911139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.195 4.195 3 C 0.117 3.883 4 N -0.542 5.542 5 C 0.262 3.738 6 C -0.524 4.524 7 H 0.047 0.953 8 C 0.019 3.981 9 N -0.922 5.922 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.278 1.278 14 C 0.578 3.422 15 S -0.720 6.720 16 N -0.676 5.676 17 C 0.223 3.777 18 H 0.104 0.896 19 C -0.109 4.109 20 C -0.136 4.136 21 C -0.207 4.207 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.201 4.201 25 S 0.093 5.907 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.149 0.851 41 H 0.166 0.834 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -10.359 -21.728 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.214 4.214 3 C -0.008 4.008 4 N -0.246 5.246 5 C 0.141 3.859 6 C -0.563 4.563 7 H 0.065 0.935 8 C -0.181 4.181 9 N -0.562 5.562 10 Si 0.785 3.215 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.203 1.203 14 C 0.215 3.785 15 S -0.591 6.591 16 N -0.311 5.311 17 C 0.117 3.883 18 H 0.122 0.878 19 C -0.148 4.148 20 C -0.194 4.194 21 C -0.325 4.325 22 C -0.154 4.154 23 C -0.170 4.170 24 C -0.336 4.336 25 S 0.356 5.644 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.166 0.834 41 H 0.183 0.817 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.211 -10.754 -20.879 23.704 hybrid contribution 0.743 1.481 -0.142 1.664 sum 3.954 -9.272 -21.021 23.313 Atomic orbital electron populations 1.24134 0.95157 1.03474 0.95826 1.23112 0.97054 0.97166 1.04105 1.21124 0.93074 0.98172 0.88386 1.47595 1.07980 1.54379 1.14625 1.19277 0.94354 0.93525 0.78729 1.21333 1.40337 0.93406 1.01228 0.93473 1.25596 0.94806 1.02829 0.94829 1.70028 1.42835 1.37697 1.05652 0.85538 0.78549 0.80148 0.77272 1.18998 1.20939 1.20311 1.21643 0.86753 0.80820 0.89243 1.93184 1.49671 1.80323 1.35875 1.45055 1.15320 1.61645 1.09102 1.19682 0.81690 0.96941 0.90018 0.87799 1.21857 1.03255 0.93253 0.96470 1.22130 1.02391 0.99336 0.95525 1.24507 0.99482 1.11138 0.97365 1.20414 0.97202 1.01084 0.96672 1.20427 1.00767 1.03061 0.92739 1.26015 0.95742 1.07640 1.04226 1.84160 1.16861 1.67115 0.96253 0.86009 0.87660 0.87128 0.88380 0.88775 0.95478 0.94208 0.92573 0.75856 0.91358 0.89032 0.92100 0.94691 0.93727 0.83361 0.81659 0.79106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 14.32 67.78 0.97 -2.21 16 2 C -0.19 -4.88 9.85 25.65 0.25 -4.63 16 3 C 0.12 3.48 5.61 85.63 0.48 3.96 16 4 N -0.54 -21.94 2.44 -718.51 -1.75 -23.69 16 5 C 0.26 13.51 4.92 85.63 0.42 13.93 16 6 C -0.52 -29.35 9.39 25.60 0.24 -29.11 16 7 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 8 C 0.02 1.08 5.46 84.65 0.46 1.54 16 9 N -0.92 -55.16 13.29 21.45 0.28 -54.88 16 10 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 C 0.58 23.07 6.44 179.06 1.15 24.22 16 15 S -0.72 -35.34 21.91 -56.49 -1.24 -36.57 16 16 N -0.68 -20.26 4.88 -333.14 -1.63 -21.89 16 17 C 0.22 6.06 2.64 44.25 0.12 6.18 16 18 H 0.10 3.44 6.79 -2.39 -0.02 3.42 16 19 C -0.11 -2.73 5.59 30.59 0.17 -2.56 16 20 C -0.14 -4.38 8.09 71.98 0.58 -3.80 16 21 C -0.21 -4.48 5.44 24.59 0.13 -4.35 16 22 C -0.12 -2.35 10.04 21.22 0.21 -2.13 16 23 C -0.14 -2.09 10.18 21.22 0.22 -1.87 16 24 C -0.20 -2.78 11.23 66.72 0.75 -2.03 16 25 S 0.09 1.60 22.32 -56.49 -1.26 0.34 16 26 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.11 2.21 7.84 -2.91 -0.02 2.18 16 28 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.10 3.02 7.72 -2.38 -0.02 3.00 16 30 H 0.09 2.30 6.36 -2.39 -0.02 2.29 16 31 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 32 H 0.04 2.38 6.58 -2.39 -0.02 2.37 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.40 10.05 5.42 -92.71 -0.50 9.55 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.26 6.49 -4.92 -0.03 2.23 16 38 H 0.03 1.32 5.29 -7.27 -0.04 1.29 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -71.53 366.29 3.07 -68.46 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.47 Total: 23.75 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 6.16 Total: -2.87 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.09 Total: -100.46 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: -33.74 SS G_CDS: -2.50 Total: -36.24 kcal Total: -71.53 3.07 -68.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.426 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds