Wall clock time and date at job start Tue Mar 31 2020 13:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 O 1.45190 * 109.47286 * 180.02562 * 12 10 9 14 14 C 1.34226 * 117.00374 * 179.97438 * 13 12 10 15 15 O 1.20834 * 119.99739 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00610 * 179.97438 * 14 13 12 17 17 H 1.09001 * 110.64150 * 59.29734 * 16 14 13 18 18 C 1.54601 * 110.72022 * 296.15240 * 16 14 13 19 19 C 1.54001 * 105.13486 * 219.68175 * 18 16 14 20 20 N 1.47904 * 107.05708 * 358.77204 * 19 18 16 21 21 C 1.46905 * 110.99654 * 145.84697 * 20 19 18 22 22 C 1.52998 * 109.47014 * 69.87399 * 21 20 19 23 23 F 1.39902 * 109.47248 * 60.00061 * 22 21 20 24 24 F 1.39900 * 109.46999 * 179.97438 * 22 21 20 25 25 F 1.39896 * 109.47301 * 299.99832 * 22 21 20 26 26 C 1.48724 * 105.94470 * 25.20590 * 20 19 18 27 27 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 29 29 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 30 30 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 31 31 H 1.08992 * 110.31009 * 338.59271 * 18 16 14 32 32 H 1.08999 * 110.31047 * 100.66994 * 18 16 14 33 33 H 1.08993 * 109.91803 * 118.13046 * 19 18 16 34 34 H 1.08998 * 109.91537 * 239.22485 * 19 18 16 35 35 H 1.08996 * 109.47277 * 189.87325 * 21 20 19 36 36 H 1.09004 * 109.46860 * 309.87463 * 21 20 19 37 37 H 1.09002 * 110.83731 * 202.57390 * 26 20 19 38 38 H 1.09003 * 110.58660 * 79.37720 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 8 2.1873 -5.9666 0.0016 14 6 1.6743 -7.2069 0.0027 15 8 0.4764 -7.3653 0.0037 16 6 2.5923 -8.4021 0.0027 17 1 3.2401 -8.3891 0.8792 18 6 3.4300 -8.4484 -1.2959 19 6 3.4824 -9.9369 -1.6877 20 7 2.7419 -10.6853 -0.6489 21 6 2.0427 -11.8395 -1.2294 22 6 3.0661 -12.8928 -1.6583 23 9 3.8042 -13.3067 -0.5443 24 9 2.4002 -13.9922 -2.2106 25 9 3.9296 -12.3429 -2.6118 26 6 1.7781 -9.7189 -0.0580 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3906 -0.0038 29 1 0.6175 -4.9205 0.8914 30 1 0.6168 -4.9209 -0.8885 31 1 2.9445 -7.8677 -2.0801 32 1 4.4349 -8.0686 -1.1116 33 1 3.0089 -10.0821 -2.6586 34 1 4.5180 -10.2746 -1.7256 35 1 1.3699 -12.2680 -0.4865 36 1 1.4676 -11.5169 -2.0974 37 1 1.4786 -10.0324 0.9421 38 1 0.9071 -9.6032 -0.7031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795735571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:09 Heat of formation + Delta-G solvation = -268.167442 kcal Electronic energy + Delta-G solvation = -27047.135528 eV Core-core repulsion = 22281.870825 eV Total energy + Delta-G solvation = -4765.264703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.40995 -47.97445 -47.83567 -40.77724 -39.10010 -38.08841 -36.18724 -34.04217 -33.56247 -31.41874 -29.66685 -29.03184 -28.06869 -24.81450 -23.77812 -23.00722 -21.60112 -20.32644 -19.62831 -18.90151 -18.81564 -18.11346 -18.02314 -17.41692 -16.78588 -16.53955 -15.94697 -15.79244 -15.12208 -14.82523 -14.68332 -14.45482 -14.38112 -14.31890 -14.14946 -14.03659 -13.99734 -13.90753 -13.60877 -13.37078 -12.93752 -12.42685 -12.34005 -12.04110 -11.98465 -11.76572 -11.66302 -11.62609 -11.16098 -11.11639 -10.49566 -10.46464 -10.42988 -10.31124 -9.63872 -9.17520 -8.56548 -8.11876 -6.53253 -3.95370 2.16537 2.25623 2.56410 3.10858 3.15781 3.21668 3.27940 3.41818 3.65048 3.69638 3.90417 4.08077 4.09056 4.29635 4.49014 4.63024 4.72258 4.76908 4.87415 4.96047 5.05101 5.11417 5.23183 5.40984 5.47286 5.51507 5.60679 5.64077 5.78652 6.00701 6.12098 6.17203 6.53614 7.44719 7.73388 7.91499 8.44745 9.03749 9.35584 9.85301 10.63906 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.042736 B = 0.001963 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.032092 B =14263.491578 C =14559.926900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.575 6.575 12 C 0.060 3.940 13 O -0.321 6.321 14 C 0.467 3.533 15 O -0.514 6.514 16 C -0.085 4.085 17 H 0.127 0.873 18 C -0.118 4.118 19 C 0.028 3.972 20 N -0.513 5.513 21 C 0.000 4.000 22 C 0.459 3.541 23 F -0.173 7.173 24 F -0.185 7.185 25 F -0.183 7.183 26 C 0.057 3.943 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -24.043 -2.887 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.018 4.018 13 O -0.235 6.235 14 C 0.310 3.690 15 O -0.403 6.403 16 C -0.105 4.105 17 H 0.145 0.855 18 C -0.156 4.156 19 C -0.100 4.100 20 N -0.237 5.237 21 C -0.130 4.130 22 C 0.404 3.596 23 F -0.154 7.154 24 F -0.166 7.166 25 F -0.164 7.164 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.224 -24.116 -2.502 24.347 hybrid contribution -0.881 0.992 -0.696 1.498 sum 1.343 -23.123 -3.199 23.382 Atomic orbital electron populations 1.69611 1.06012 1.28528 1.49592 1.25323 0.95700 0.99909 0.96853 0.85789 0.79239 0.80365 0.78513 1.20247 1.20799 1.19252 1.19726 0.93486 0.81733 1.48225 0.87590 1.41709 1.09371 1.04106 1.63769 1.19307 0.88343 0.84053 0.86088 1.90566 1.13379 1.86760 1.55247 1.22776 0.90851 0.84622 1.03502 1.86554 1.40286 1.14063 1.82563 1.23380 0.88278 0.84951 0.72435 1.90661 1.16776 1.86881 1.45968 1.21845 0.96611 0.89382 1.02631 0.85545 1.22399 1.01880 0.95885 0.95470 1.23205 1.00635 0.92819 0.93314 1.64702 1.23444 1.06720 1.28881 1.23402 0.94205 0.92396 1.02991 1.20380 0.82039 0.82062 0.75093 1.93214 1.78755 1.91125 1.52343 1.93194 1.80479 1.56730 1.86216 1.93185 1.72398 1.85151 1.65680 1.23162 0.93486 0.88574 1.01788 0.91600 0.77167 0.89478 0.89575 0.90295 0.88656 0.92469 0.88725 0.85900 0.89638 0.88136 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 10 C 0.44 10.31 7.86 -10.98 -0.09 10.23 16 11 O -0.58 -15.70 16.08 -14.11 -0.23 -15.92 16 12 C 0.06 1.10 5.94 36.01 0.21 1.31 16 13 O -0.32 -5.63 9.75 -45.89 -0.45 -6.08 16 14 C 0.47 6.67 7.14 36.01 0.26 6.93 16 15 O -0.51 -8.13 15.50 -18.76 -0.29 -8.42 16 16 C -0.08 -0.87 3.55 -89.91 -0.32 -1.19 16 17 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 18 C -0.12 -1.10 6.50 -25.37 -0.16 -1.27 16 19 C 0.03 0.22 5.11 -2.75 -0.01 0.21 16 20 N -0.51 -4.09 5.18 -230.28 -1.19 -5.29 16 21 C 0.00 0.00 4.89 -3.82 -0.02 -0.02 16 22 C 0.46 3.55 3.27 37.16 0.12 3.68 16 23 F -0.17 -1.60 17.24 2.25 0.04 -1.56 16 24 F -0.18 -1.48 17.32 2.25 0.04 -1.44 16 25 F -0.18 -1.58 14.72 2.25 0.03 -1.54 16 26 C 0.06 0.48 5.62 -1.79 -0.01 0.47 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 28 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 29 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 30 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 31 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.42 7.30 -51.93 -0.38 0.04 16 34 H 0.09 0.75 7.51 -51.93 -0.39 0.36 16 35 H 0.12 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.09 0.44 7.82 -51.93 -0.41 0.03 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.63 7.36 -51.93 -0.38 0.25 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -31.94 340.05 -5.87 -37.81 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.33 Total: 6.21 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -0.26 Total: 12.52 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.53 Total: -42.13 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.97 Total: -30.42 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.11 Total: -4.55 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.94 -5.87 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795735571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.356 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds