Wall clock time and date at job start Tue Mar 31 2020 13:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 O 1.45190 * 109.47286 * 180.02562 * 12 10 9 14 14 C 1.34226 * 117.00374 * 179.97438 * 13 12 10 15 15 O 1.20834 * 119.99739 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00610 * 179.97438 * 14 13 12 17 17 H 1.09001 * 110.64150 * 59.29734 * 16 14 13 18 18 C 1.54601 * 110.72022 * 296.15240 * 16 14 13 19 19 C 1.54001 * 105.13486 * 219.68175 * 18 16 14 20 20 N 1.47904 * 107.05708 * 358.77204 * 19 18 16 21 21 C 1.46905 * 110.99654 * 145.84697 * 20 19 18 22 22 C 1.52998 * 109.47014 * 69.87399 * 21 20 19 23 23 F 1.39902 * 109.47248 * 60.00061 * 22 21 20 24 24 F 1.39900 * 109.46999 * 179.97438 * 22 21 20 25 25 F 1.39896 * 109.47301 * 299.99832 * 22 21 20 26 26 C 1.48724 * 105.94470 * 25.20590 * 20 19 18 27 27 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 29 29 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 30 30 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 31 31 H 1.08992 * 110.31009 * 338.59271 * 18 16 14 32 32 H 1.08999 * 110.31047 * 100.66994 * 18 16 14 33 33 H 1.08993 * 109.91803 * 118.13046 * 19 18 16 34 34 H 1.08998 * 109.91537 * 239.22485 * 19 18 16 35 35 H 1.08996 * 109.47277 * 189.87325 * 21 20 19 36 36 H 1.09004 * 109.46860 * 309.87463 * 21 20 19 37 37 H 1.09002 * 110.83731 * 202.57390 * 26 20 19 38 38 H 1.09003 * 110.58660 * 79.37720 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 8 2.1873 -5.9666 0.0016 14 6 1.6743 -7.2069 0.0027 15 8 0.4764 -7.3653 0.0037 16 6 2.5923 -8.4021 0.0027 17 1 3.2401 -8.3891 0.8792 18 6 3.4300 -8.4484 -1.2959 19 6 3.4824 -9.9369 -1.6877 20 7 2.7419 -10.6853 -0.6489 21 6 2.0427 -11.8395 -1.2294 22 6 3.0661 -12.8928 -1.6583 23 9 3.8042 -13.3067 -0.5443 24 9 2.4002 -13.9922 -2.2106 25 9 3.9296 -12.3429 -2.6118 26 6 1.7781 -9.7189 -0.0580 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3906 -0.0038 29 1 0.6175 -4.9205 0.8914 30 1 0.6168 -4.9209 -0.8885 31 1 2.9445 -7.8677 -2.0801 32 1 4.4349 -8.0686 -1.1116 33 1 3.0089 -10.0821 -2.6586 34 1 4.5180 -10.2746 -1.7256 35 1 1.3699 -12.2680 -0.4865 36 1 1.4676 -11.5169 -2.0974 37 1 1.4786 -10.0324 0.9421 38 1 0.9071 -9.6032 -0.7031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795735571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:09 Heat of formation + Delta-G solvation = -289.637715 kcal Electronic energy + Delta-G solvation = -27048.066549 eV Core-core repulsion = 22281.870825 eV Total energy + Delta-G solvation = -4766.195724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.03457 -48.59582 -48.48579 -41.91273 -40.27433 -39.58608 -37.51452 -36.04102 -34.26621 -33.42041 -30.58445 -30.01161 -29.14160 -26.65073 -24.59386 -23.84389 -22.24767 -21.47862 -21.32453 -20.08387 -19.52168 -19.44890 -19.00458 -18.26351 -17.94649 -17.79706 -17.25441 -16.93911 -16.58514 -15.95230 -15.67364 -15.63043 -15.46379 -15.20213 -15.04925 -14.95354 -14.70253 -14.67808 -14.55974 -14.31947 -14.10393 -13.79460 -13.62528 -13.54582 -12.94650 -12.88758 -12.72006 -12.48428 -12.41714 -12.40003 -12.12578 -11.91645 -11.86626 -11.58263 -11.48360 -10.52075 -10.12592 -9.77158 -8.53170 -6.03697 1.03257 1.28265 1.35646 1.43988 1.56634 1.76937 1.86385 2.28272 2.50349 2.85693 3.02657 3.09806 3.12441 3.20738 3.45840 3.57396 3.67930 3.95388 4.12282 4.13054 4.14372 4.18570 4.21266 4.23498 4.32271 4.58411 4.74540 4.83425 4.90467 5.07692 5.29574 5.36632 5.47639 5.58291 5.88251 6.44210 6.59218 7.02311 7.39187 7.92665 8.63768 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.042736 B = 0.001963 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.032092 B =14263.491578 C =14559.926900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.071 3.929 13 O -0.341 6.341 14 C 0.470 3.530 15 O -0.528 6.528 16 C -0.083 4.083 17 H 0.138 0.862 18 C -0.118 4.118 19 C 0.032 3.968 20 N -0.519 5.519 21 C 0.002 3.998 22 C 0.458 3.542 23 F -0.183 7.183 24 F -0.186 7.186 25 F -0.189 7.189 26 C 0.064 3.936 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -24.717 -2.899 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.006 4.006 13 O -0.256 6.256 14 C 0.314 3.686 15 O -0.417 6.417 16 C -0.102 4.102 17 H 0.156 0.844 18 C -0.156 4.156 19 C -0.096 4.096 20 N -0.243 5.243 21 C -0.128 4.128 22 C 0.404 3.596 23 F -0.165 7.165 24 F -0.168 7.168 25 F -0.171 7.171 26 C -0.062 4.062 27 H 0.090 0.910 28 H 0.234 0.766 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.161 0.839 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.645 -24.813 -2.519 24.995 hybrid contribution -0.717 1.121 -0.706 1.506 sum 0.927 -23.693 -3.225 23.929 Atomic orbital electron populations 1.69667 1.06929 1.29731 1.49183 1.26127 0.96596 1.02599 0.95689 0.84856 0.77903 0.76373 0.78796 1.19452 1.19460 1.19547 1.19711 0.92932 0.83384 1.50625 0.89773 1.41751 1.09565 1.04223 1.64049 1.20136 0.88096 0.85421 0.84092 1.90531 1.15463 1.87706 1.56723 1.22517 0.90166 0.82563 1.05359 1.86562 1.40718 1.15045 1.83239 1.24098 0.88728 0.84483 0.71335 1.90651 1.17617 1.86801 1.46673 1.21998 0.96453 0.88234 1.03556 0.84380 1.22401 1.01584 0.96860 0.94745 1.23170 1.00922 0.91738 0.93726 1.64682 1.23604 1.06887 1.29149 1.23502 0.93776 0.91283 1.04213 1.20603 0.82060 0.82304 0.74649 1.93194 1.79134 1.91299 1.52861 1.93189 1.80428 1.56954 1.86232 1.93172 1.72761 1.85208 1.65952 1.23129 0.93026 0.87568 1.02523 0.90964 0.76562 0.87515 0.87588 0.91167 0.88630 0.91714 0.88667 0.83936 0.88121 0.86891 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.02 13.05 21.66 0.28 -47.74 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.56 -28.16 5.29 -306.98 -1.62 -29.78 16 10 C 0.44 20.81 7.86 87.66 0.69 21.50 16 11 O -0.62 -34.50 16.08 15.73 0.25 -34.25 16 12 C 0.07 2.56 5.94 71.24 0.42 2.98 16 13 O -0.34 -11.76 9.75 -45.02 -0.44 -12.20 16 14 C 0.47 12.84 7.14 71.24 0.51 13.34 16 15 O -0.53 -15.88 15.50 21.94 0.34 -15.54 16 16 C -0.08 -1.57 3.55 -10.33 -0.04 -1.61 16 17 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.12 -2.07 6.50 31.48 0.20 -1.86 16 19 C 0.03 0.46 5.11 86.45 0.44 0.90 16 20 N -0.52 -7.13 5.18 -882.47 -4.57 -11.70 16 21 C 0.00 0.02 4.89 86.30 0.42 0.44 16 22 C 0.46 6.33 3.27 71.98 0.24 6.57 16 23 F -0.18 -3.15 17.24 44.97 0.78 -2.37 16 24 F -0.19 -2.70 17.32 44.97 0.78 -1.92 16 25 F -0.19 -3.01 14.72 44.97 0.66 -2.35 16 26 C 0.06 0.95 5.62 86.61 0.49 1.44 16 27 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 29 H 0.11 3.43 8.13 -2.38 -0.02 3.41 16 30 H 0.11 3.39 8.13 -2.39 -0.02 3.37 16 31 H 0.07 1.35 7.84 -2.39 -0.02 1.34 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 0.84 7.30 -2.39 -0.02 0.82 16 34 H 0.10 1.38 7.51 -2.39 -0.02 1.36 16 35 H 0.14 0.89 8.11 -2.39 -0.02 0.87 16 36 H 0.10 0.76 7.82 -2.38 -0.02 0.74 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.05 7.36 -2.39 -0.02 1.03 16 Total: -1.00 -68.30 340.05 3.53 -64.77 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.39 Total: 23.71 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 4.65 Total: 25.78 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -5.91 Total: -89.23 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: 0.15 Total: -61.98 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 2.22 Total: -6.64 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -68.30 3.53 -64.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795735571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.870 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds