Wall clock time and date at job start Tue Mar 31 2020 13:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47155 * 270.00117 * 3 2 1 5 5 H 1.48504 * 109.47071 * 30.00050 * 3 2 1 6 6 H 1.48505 * 109.47066 * 149.99958 * 3 2 1 7 7 C 1.38945 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00125 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00175 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99993 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00096 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46938 * 179.97438 * 12 10 9 14 14 C 1.34232 * 116.99881 * 179.97438 * 13 12 10 15 15 O 1.20826 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00159 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.76850 * 298.25823 * 16 14 13 18 18 C 1.55147 * 110.70281 * 61.45287 * 16 14 13 19 19 C 1.54908 * 101.65049 * 154.03465 * 18 16 14 20 20 N 1.47845 * 104.79717 * 322.93105 * 19 18 16 21 21 C 1.46904 * 110.99935 * 146.36210 * 20 19 18 22 22 C 1.53000 * 109.47094 * 69.15633 * 21 20 19 23 23 F 1.39898 * 109.46707 * 60.00290 * 22 21 20 24 24 F 1.39901 * 109.46943 * 179.97438 * 22 21 20 25 25 F 1.39891 * 109.47227 * 299.99913 * 22 21 20 26 26 C 1.47439 * 108.56650 * 24.09802 * 20 19 18 27 27 H 0.96991 * 120.00469 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99654 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47247 * 59.99916 * 12 10 9 30 30 H 1.08997 * 109.46995 * 299.99892 * 12 10 9 31 31 H 1.08996 * 110.99290 * 272.12894 * 18 16 14 32 32 H 1.09002 * 110.98631 * 35.95138 * 18 16 14 33 33 H 1.09005 * 110.37447 * 81.76012 * 19 18 16 34 34 H 1.08998 * 110.37529 * 204.10029 * 19 18 16 35 35 H 1.09000 * 109.47334 * 189.15883 * 21 20 19 36 36 H 1.09002 * 109.47152 * 309.15836 * 21 20 19 37 37 H 1.09003 * 109.88723 * 239.60536 * 26 20 19 38 38 H 1.08999 * 109.89041 * 118.41926 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0009 12 6 5.5608 -2.3703 0.0000 13 8 6.0448 -3.7393 0.0006 14 6 7.3756 -3.9152 0.0002 15 8 8.1115 -2.9569 -0.0003 16 6 7.9517 -5.3077 0.0002 17 1 7.6539 -5.8492 0.8981 18 6 7.5200 -6.0798 -1.2744 19 6 8.6729 -7.1034 -1.4256 20 7 9.8877 -6.3670 -1.0162 21 6 10.8459 -7.2602 -0.3513 22 6 11.4239 -8.2403 -1.3741 23 9 12.0758 -7.5276 -2.3861 24 9 12.3368 -9.0906 -0.7410 25 9 10.3882 -8.9985 -1.9305 26 6 9.4891 -5.2622 -0.1249 27 1 -0.4850 0.8399 0.0004 28 1 3.8648 -0.3632 -0.0004 29 1 5.9242 -1.8565 0.8900 30 1 5.9241 -1.8565 -0.8900 31 1 6.5667 -6.5853 -1.1206 32 1 7.4730 -5.4146 -2.1366 33 1 8.5090 -7.9590 -0.7704 34 1 8.7578 -7.4290 -2.4623 35 1 11.6528 -6.6695 0.0822 36 1 10.3380 -7.8155 0.4373 37 1 9.7981 -4.3093 -0.5545 38 1 9.9450 -5.3944 0.8563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795735572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:12 Heat of formation + Delta-G solvation = -260.147011 kcal Electronic energy + Delta-G solvation = -27119.933569 eV Core-core repulsion = 22355.016658 eV Total energy + Delta-G solvation = -4764.916911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.42280 -47.98933 -47.84585 -40.87133 -39.22170 -38.27227 -36.28989 -34.10020 -33.52378 -31.83285 -29.75728 -29.12184 -28.22696 -24.74639 -23.75496 -23.01464 -21.69683 -20.32676 -19.68445 -18.91799 -18.79101 -18.63011 -18.20082 -17.70788 -16.66899 -16.60011 -15.93975 -15.74296 -15.08253 -15.03806 -14.79862 -14.62078 -14.51647 -14.36328 -14.25175 -14.04661 -14.00895 -13.73101 -13.41269 -13.16516 -13.00293 -12.61748 -12.46661 -12.31059 -12.24948 -11.99246 -11.77157 -11.64648 -11.29249 -11.24326 -10.67871 -10.59894 -10.49675 -10.07947 -9.70849 -9.08649 -8.70835 -8.32529 -6.42108 -3.95250 2.09926 2.25799 2.50882 2.96224 3.01070 3.06866 3.10169 3.41100 3.51537 3.62572 3.85571 4.01001 4.08823 4.14595 4.34866 4.52985 4.65573 4.69145 4.81931 4.85668 4.90589 5.07336 5.09672 5.30993 5.46087 5.49739 5.55931 5.63487 5.66219 5.74472 6.15262 6.19956 6.43242 7.41198 7.68458 7.97535 8.44432 8.80530 9.26648 9.61881 10.70086 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.040220 B = 0.002060 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.012141 B =13588.967471 C =13953.188710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.447 3.553 11 O -0.558 6.558 12 C 0.057 3.943 13 O -0.320 6.320 14 C 0.471 3.529 15 O -0.510 6.510 16 C -0.105 4.105 17 H 0.119 0.881 18 C -0.116 4.116 19 C 0.033 3.967 20 N -0.522 5.522 21 C 0.002 3.998 22 C 0.458 3.542 23 F -0.173 7.173 24 F -0.185 7.185 25 F -0.183 7.183 26 C 0.058 3.942 27 H 0.276 0.724 28 H 0.373 0.627 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.916 -13.055 -0.266 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.232 3.768 11 O -0.439 6.439 12 C -0.020 4.020 13 O -0.234 6.234 14 C 0.313 3.687 15 O -0.399 6.399 16 C -0.125 4.125 17 H 0.137 0.863 18 C -0.154 4.154 19 C -0.094 4.094 20 N -0.246 5.246 21 C -0.128 4.128 22 C 0.403 3.597 23 F -0.154 7.154 24 F -0.167 7.167 25 F -0.164 7.164 26 C -0.069 4.069 27 H 0.086 0.914 28 H 0.206 0.794 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.737 -13.163 -0.728 27.152 hybrid contribution 0.334 1.096 0.642 1.313 sum 24.071 -12.067 -0.085 26.927 Atomic orbital electron populations 1.69610 1.05653 1.27806 1.48253 1.25045 0.95533 0.98094 0.97240 0.86675 0.79838 0.83841 0.79121 1.19375 1.19927 1.19366 1.19419 0.78651 0.96877 1.48736 0.86003 1.42039 1.07658 1.05715 1.66471 1.19178 0.86905 0.85147 0.85591 1.90606 1.69027 1.30702 1.53597 1.22777 0.95210 0.80402 1.03636 1.86557 1.22893 1.31277 1.82721 1.23231 0.81195 0.91830 0.72397 1.90656 1.60637 1.42773 1.45820 1.22205 0.96198 0.91458 1.02632 0.86346 1.22752 0.99139 0.97438 0.96037 1.23416 0.87579 0.95664 1.02769 1.63621 1.13215 1.09518 1.38290 1.23494 0.99924 0.95665 0.93754 1.20401 0.76194 0.80791 0.82264 1.93216 1.81866 1.77851 1.62502 1.93193 1.68504 1.72962 1.82004 1.93183 1.58317 1.77987 1.86918 1.22846 0.91636 0.96130 0.96304 0.91354 0.79380 0.89396 0.89334 0.88355 0.89504 0.92059 0.88594 0.86031 0.89717 0.87331 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.50 0.77 -24.08 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.78 27.74 -169.99 -4.71 14.06 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 9 N -0.58 -13.47 5.09 -10.96 -0.06 -13.53 16 10 C 0.45 10.07 7.86 -10.99 -0.09 9.99 16 11 O -0.56 -14.94 16.08 -14.12 -0.23 -15.17 16 12 C 0.06 0.98 5.94 36.01 0.21 1.20 16 13 O -0.32 -5.33 9.74 -45.91 -0.45 -5.78 16 14 C 0.47 6.39 7.26 36.01 0.26 6.65 16 15 O -0.51 -7.74 15.21 -18.75 -0.29 -8.02 16 16 C -0.10 -0.99 3.45 -89.95 -0.31 -1.30 16 17 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.12 -1.03 6.50 -24.59 -0.16 -1.19 16 19 C 0.03 0.24 5.08 -2.30 -0.01 0.23 16 20 N -0.52 -4.07 5.09 -231.25 -1.18 -5.24 16 21 C 0.00 0.01 4.69 -3.82 -0.02 -0.01 16 22 C 0.46 3.43 3.26 37.16 0.12 3.55 16 23 F -0.17 -1.61 17.24 2.25 0.04 -1.57 16 24 F -0.19 -1.43 17.32 2.25 0.04 -1.39 16 25 F -0.18 -1.52 14.70 2.25 0.03 -1.49 16 26 C 0.06 0.47 6.26 -2.84 -0.02 0.45 16 27 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 29 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 33 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 34 H 0.10 0.75 7.52 -51.93 -0.39 0.36 16 35 H 0.12 0.51 8.03 -51.93 -0.42 0.09 16 36 H 0.08 0.35 7.85 -51.93 -0.41 -0.06 16 37 H 0.11 1.08 6.88 -51.93 -0.36 0.73 16 38 H 0.07 0.44 7.55 -51.93 -0.39 0.04 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -33.20 336.08 -5.46 -38.66 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.24 Total: 6.45 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -0.25 Total: 12.03 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.46 Total: -42.84 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.96 Total: -28.98 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.11 Total: -4.45 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.20 -5.46 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795735572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.487 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds