Wall clock time and date at job start Tue Mar 31 2020 13:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47155 * 270.00117 * 3 2 1 5 5 H 1.48504 * 109.47071 * 30.00050 * 3 2 1 6 6 H 1.48505 * 109.47066 * 149.99958 * 3 2 1 7 7 C 1.38945 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00125 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00175 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99993 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00096 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46938 * 179.97438 * 12 10 9 14 14 C 1.34232 * 116.99881 * 179.97438 * 13 12 10 15 15 O 1.20826 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00159 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.76850 * 298.25823 * 16 14 13 18 18 C 1.55147 * 110.70281 * 61.45287 * 16 14 13 19 19 C 1.54908 * 101.65049 * 154.03465 * 18 16 14 20 20 N 1.47845 * 104.79717 * 322.93105 * 19 18 16 21 21 C 1.46904 * 110.99935 * 146.36210 * 20 19 18 22 22 C 1.53000 * 109.47094 * 69.15633 * 21 20 19 23 23 F 1.39898 * 109.46707 * 60.00290 * 22 21 20 24 24 F 1.39901 * 109.46943 * 179.97438 * 22 21 20 25 25 F 1.39891 * 109.47227 * 299.99913 * 22 21 20 26 26 C 1.47439 * 108.56650 * 24.09802 * 20 19 18 27 27 H 0.96991 * 120.00469 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99654 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47247 * 59.99916 * 12 10 9 30 30 H 1.08997 * 109.46995 * 299.99892 * 12 10 9 31 31 H 1.08996 * 110.99290 * 272.12894 * 18 16 14 32 32 H 1.09002 * 110.98631 * 35.95138 * 18 16 14 33 33 H 1.09005 * 110.37447 * 81.76012 * 19 18 16 34 34 H 1.08998 * 110.37529 * 204.10029 * 19 18 16 35 35 H 1.09000 * 109.47334 * 189.15883 * 21 20 19 36 36 H 1.09002 * 109.47152 * 309.15836 * 21 20 19 37 37 H 1.09003 * 109.88723 * 239.60536 * 26 20 19 38 38 H 1.08999 * 109.89041 * 118.41926 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0009 12 6 5.5608 -2.3703 0.0000 13 8 6.0448 -3.7393 0.0006 14 6 7.3756 -3.9152 0.0002 15 8 8.1115 -2.9569 -0.0003 16 6 7.9517 -5.3077 0.0002 17 1 7.6539 -5.8492 0.8981 18 6 7.5200 -6.0798 -1.2744 19 6 8.6729 -7.1034 -1.4256 20 7 9.8877 -6.3670 -1.0162 21 6 10.8459 -7.2602 -0.3513 22 6 11.4239 -8.2403 -1.3741 23 9 12.0758 -7.5276 -2.3861 24 9 12.3368 -9.0906 -0.7410 25 9 10.3882 -8.9985 -1.9305 26 6 9.4891 -5.2622 -0.1249 27 1 -0.4850 0.8399 0.0004 28 1 3.8648 -0.3632 -0.0004 29 1 5.9242 -1.8565 0.8900 30 1 5.9241 -1.8565 -0.8900 31 1 6.5667 -6.5853 -1.1206 32 1 7.4730 -5.4146 -2.1366 33 1 8.5090 -7.9590 -0.7704 34 1 8.7578 -7.4290 -2.4623 35 1 11.6528 -6.6695 0.0822 36 1 10.3380 -7.8155 0.4373 37 1 9.7981 -4.3093 -0.5545 38 1 9.9450 -5.3944 0.8563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795735572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:11 Heat of formation + Delta-G solvation = -284.118727 kcal Electronic energy + Delta-G solvation = -27120.973061 eV Core-core repulsion = 22355.016658 eV Total energy + Delta-G solvation = -4765.956403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.01732 -48.57599 -48.47646 -41.92528 -40.39914 -39.66143 -37.52704 -36.09006 -34.16876 -33.86518 -30.65571 -30.07846 -29.16632 -26.53091 -24.53873 -23.80800 -22.32309 -21.55171 -21.23878 -20.52801 -19.52269 -19.37924 -19.05973 -18.49068 -17.94066 -17.73254 -17.40063 -16.77879 -16.63338 -15.86197 -15.67432 -15.52954 -15.39439 -15.19552 -15.05588 -14.93469 -14.73224 -14.67075 -14.61419 -14.33666 -14.18118 -13.92870 -13.79672 -13.60843 -13.01971 -12.99416 -12.75999 -12.46621 -12.39991 -12.30862 -12.00835 -11.93246 -11.85997 -11.59374 -11.51986 -10.61362 -10.34834 -9.61883 -8.46623 -6.09871 1.05158 1.27881 1.32387 1.33456 1.44707 1.75227 1.78943 2.19693 2.49606 2.79299 2.90069 3.07705 3.11677 3.20553 3.48517 3.50942 3.71688 3.89966 4.02615 4.11376 4.13291 4.15852 4.18732 4.24360 4.34353 4.51334 4.83167 4.92314 4.99261 5.04964 5.27710 5.47226 5.60157 5.67673 5.84683 6.44958 6.60273 6.76866 7.25064 7.76865 8.69908 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.040220 B = 0.002060 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.012141 B =13588.967471 C =13953.188710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.961 3.039 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.333 4.333 8 H 0.061 0.939 9 N -0.577 5.577 10 C 0.448 3.552 11 O -0.608 6.608 12 C 0.067 3.933 13 O -0.342 6.342 14 C 0.472 3.528 15 O -0.525 6.525 16 C -0.101 4.101 17 H 0.142 0.858 18 C -0.116 4.116 19 C 0.039 3.961 20 N -0.537 5.537 21 C 0.005 3.995 22 C 0.455 3.545 23 F -0.187 7.187 24 F -0.187 7.187 25 F -0.189 7.189 26 C 0.065 3.935 27 H 0.282 0.718 28 H 0.393 0.607 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.918 -12.058 0.571 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.154 1.154 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.010 4.010 13 O -0.257 6.257 14 C 0.316 3.684 15 O -0.414 6.414 16 C -0.120 4.120 17 H 0.160 0.840 18 C -0.155 4.155 19 C -0.088 4.088 20 N -0.261 5.261 21 C -0.125 4.125 22 C 0.401 3.599 23 F -0.169 7.169 24 F -0.168 7.168 25 F -0.171 7.171 26 C -0.062 4.062 27 H 0.092 0.908 28 H 0.229 0.771 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 26.776 -12.173 0.108 29.414 hybrid contribution -0.615 0.634 0.348 0.949 sum 26.162 -11.540 0.456 28.597 Atomic orbital electron populations 1.69779 1.08070 1.29569 1.49063 1.26100 0.96479 1.02677 0.95611 0.85416 0.79589 0.76759 0.80148 1.17988 1.19703 1.15408 1.18995 0.80753 0.95310 1.51101 0.92099 1.41826 1.06120 1.07063 1.66835 1.20202 0.89396 0.83994 0.82882 1.90582 1.70969 1.32578 1.55144 1.22594 0.90547 0.81642 1.06213 1.86567 1.24965 1.30831 1.83378 1.23972 0.79806 0.93295 0.71331 1.90647 1.60515 1.43699 1.46559 1.22384 0.96947 0.88998 1.03704 0.84002 1.22734 0.99866 0.97548 0.95320 1.23358 0.86914 0.95603 1.02924 1.63514 1.13488 1.10107 1.39000 1.23607 1.00125 0.95440 0.93307 1.20724 0.75959 0.80970 0.82275 1.93188 1.82203 1.78140 1.63326 1.93189 1.68629 1.73102 1.81909 1.93170 1.58538 1.78252 1.87137 1.22755 0.90494 0.95423 0.97484 0.90820 0.77103 0.86549 0.86727 0.88411 0.91088 0.90391 0.89242 0.84165 0.87290 0.89322 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.96 21.66 0.30 -53.95 16 2 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 3 Si 0.96 37.44 27.74 68.60 1.90 39.34 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 7 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 8 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 9 N -0.58 -26.62 5.09 -306.98 -1.56 -28.19 16 10 C 0.45 20.19 7.86 87.66 0.69 20.88 16 11 O -0.61 -33.75 16.08 15.72 0.25 -33.50 16 12 C 0.07 2.16 5.94 71.24 0.42 2.59 16 13 O -0.34 -10.94 9.74 -45.09 -0.44 -11.38 16 14 C 0.47 11.90 7.26 71.24 0.52 12.42 16 15 O -0.53 -14.72 15.21 21.96 0.33 -14.39 16 16 C -0.10 -1.66 3.45 -10.36 -0.04 -1.70 16 17 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.12 -1.93 6.50 31.98 0.21 -1.72 16 19 C 0.04 0.51 5.08 86.77 0.44 0.95 16 20 N -0.54 -7.06 5.09 -885.54 -4.50 -11.56 16 21 C 0.00 0.04 4.69 86.30 0.40 0.44 16 22 C 0.46 5.97 3.26 71.98 0.23 6.21 16 23 F -0.19 -3.27 17.24 44.97 0.78 -2.49 16 24 F -0.19 -2.54 17.32 44.97 0.78 -1.76 16 25 F -0.19 -2.86 14.70 44.97 0.66 -2.20 16 26 C 0.07 0.88 6.26 86.65 0.54 1.42 16 27 H 0.28 15.06 8.31 -92.72 -0.77 14.29 16 28 H 0.39 14.84 5.76 -92.71 -0.53 14.30 16 29 H 0.12 3.13 8.13 -2.39 -0.02 3.11 16 30 H 0.11 3.13 8.13 -2.39 -0.02 3.11 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 33 H 0.08 0.77 7.36 -2.38 -0.02 0.76 16 34 H 0.09 1.31 7.52 -2.39 -0.02 1.29 16 35 H 0.14 0.67 8.03 -2.39 -0.02 0.65 16 36 H 0.11 0.44 7.85 -2.39 -0.02 0.42 16 37 H 0.09 1.60 6.88 -2.39 -0.02 1.58 16 38 H 0.10 0.80 7.55 -2.39 -0.02 0.78 16 Total: -1.00 -76.91 336.08 3.78 -73.13 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.53 Total: 23.63 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 4.75 Total: 23.33 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -5.76 Total: -93.69 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: 0.15 Total: -59.27 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 2.21 Total: -6.46 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 1.90 Total: 39.34 kcal Total: -76.91 3.78 -73.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795735572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.990 kcal (2) G-P(sol) polarization free energy of solvation -76.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds