Wall clock time and date at job start Tue Mar 31 2020 13:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30100 * 124.95001 * 2 1 4 4 C 1.35834 * 109.65270 * 179.97438 * 3 2 1 5 5 C 1.39782 * 133.50389 * 180.02562 * 4 3 2 6 6 C 1.37732 * 119.78201 * 179.97438 * 5 4 3 7 7 F 1.35103 * 119.77046 * 180.02562 * 6 5 4 8 8 C 1.39176 * 120.45579 * 0.02562 * 6 5 4 9 9 F 1.35103 * 119.80927 * 179.97438 * 8 6 5 10 10 C 1.37979 * 120.38518 * 359.97438 * 8 6 5 11 11 C 1.38835 * 119.84342 * 0.02562 * 10 8 6 12 12 N 1.36066 * 124.95944 * 180.27785 * 2 1 3 13 13 C 1.46509 * 126.34983 * 0.05859 * 12 2 1 14 14 C 1.50702 * 109.46842 * 270.10693 * 13 12 2 15 15 O 1.20819 * 120.00323 * 0.02562 * 14 13 12 16 16 O 1.34235 * 119.99480 * 179.97438 * 14 13 12 17 17 C 1.45200 * 116.99604 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46746 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46637 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00386 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99845 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99668 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47114 * 89.99715 * 23 21 19 25 25 H 1.48502 * 109.47377 * 209.99744 * 23 21 19 26 26 H 1.48497 * 109.47040 * 329.99729 * 23 21 19 27 27 H 1.09000 * 109.47019 * 90.03069 * 1 2 3 28 28 H 1.09004 * 109.47229 * 210.02931 * 1 2 3 29 29 H 1.08998 * 109.47872 * 330.02823 * 1 2 3 30 30 H 1.08007 * 120.10950 * 0.02562 * 5 4 3 31 31 H 1.07998 * 120.08301 * 179.97438 * 10 8 6 32 32 H 1.08995 * 109.47230 * 30.10891 * 13 12 2 33 33 H 1.08999 * 109.46775 * 150.10803 * 13 12 2 34 34 H 1.08995 * 109.47097 * 300.00412 * 17 16 14 35 35 H 1.09000 * 109.47343 * 60.00481 * 17 16 14 36 36 H 1.08990 * 109.47064 * 300.00006 * 18 17 16 37 37 H 1.09000 * 109.46947 * 60.00066 * 18 17 16 38 38 H 0.97000 * 119.99646 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5625 0.7080 0.0006 5 6 4.7581 1.4321 0.0013 6 6 5.9625 0.7639 0.0023 7 9 7.1180 1.4640 0.0035 8 6 5.9974 -0.6274 0.0021 9 9 7.1862 -1.2694 0.0025 10 6 4.8250 -1.3549 0.0014 11 6 3.6030 -0.6960 0.0003 12 7 2.2866 -1.1151 -0.0054 13 6 1.8171 -2.5029 -0.0133 14 6 1.6525 -2.9856 1.4048 15 8 1.9012 -2.2462 2.3273 16 8 1.2284 -4.2367 1.6429 17 6 1.0923 -4.6332 3.0330 18 6 0.6026 -6.0810 3.1048 19 6 0.4608 -6.4923 4.5476 20 1 0.6960 -5.7912 5.3346 21 6 0.0307 -7.7638 4.8629 22 7 -0.2562 -8.6174 3.9044 23 14 -0.1458 -8.2735 6.6513 24 1 -1.5191 -7.9606 7.1220 25 1 0.1001 -9.7326 6.7768 26 1 0.8413 -7.5324 7.4769 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3635 0.8902 0.5134 30 1 4.7376 2.5120 0.0019 31 1 4.8578 -2.4344 0.0008 32 1 0.8590 -2.5594 -0.5300 33 1 2.5451 -3.1298 -0.5283 34 1 2.0588 -4.5519 3.5303 35 1 0.3729 -3.9810 3.5282 36 1 -0.3638 -6.1627 2.6074 37 1 1.3223 -6.7329 2.6097 38 1 -0.5591 -9.5118 4.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796006606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:47 Heat of formation + Delta-G solvation = -105.907054 kcal Electronic energy + Delta-G solvation = -26267.017291 eV Core-core repulsion = 21939.557951 eV Total energy + Delta-G solvation = -4327.459340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.66099 -48.73608 -42.71123 -40.22262 -37.42843 -36.48766 -34.64580 -33.48720 -31.62337 -31.02679 -30.43473 -28.42113 -27.65623 -25.13268 -23.21321 -22.80313 -21.94155 -20.97258 -20.28830 -18.62747 -18.17644 -18.00993 -17.29978 -16.73135 -16.49437 -16.45162 -16.32365 -15.80677 -15.45592 -15.17580 -15.15399 -14.59063 -14.57208 -14.16051 -13.89962 -13.68768 -13.32461 -13.22363 -12.97799 -12.82652 -12.67681 -12.46343 -11.99077 -11.42333 -11.40945 -11.20573 -11.06398 -10.89736 -10.81673 -10.46226 -10.42162 -9.87034 -9.79290 -9.43339 -8.65765 -8.55146 -8.47904 -6.21197 -4.26290 0.28544 0.74447 1.79518 2.09389 2.21278 2.88549 3.18533 3.21719 3.28429 3.32319 3.37668 3.69429 3.85018 4.12552 4.18367 4.29030 4.52960 4.60695 4.70611 4.75598 4.79558 5.01940 5.08013 5.15831 5.20460 5.35408 5.44702 5.51249 5.76828 5.84182 5.88375 5.96841 6.35401 6.43838 6.56378 6.64947 7.38708 7.41546 7.46003 7.69861 7.85199 8.10264 8.79006 9.39054 10.90156 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002578 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.272732 B =10856.975760 C =11875.192854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.314 3.686 3 N -0.487 5.487 4 C 0.072 3.928 5 C -0.073 4.073 6 C 0.064 3.936 7 F -0.126 7.126 8 C 0.085 3.915 9 F -0.123 7.123 10 C -0.112 4.112 11 C 0.070 3.930 12 N -0.474 5.474 13 C 0.114 3.886 14 C 0.434 3.566 15 O -0.497 6.497 16 O -0.351 6.351 17 C 0.076 3.924 18 C 0.026 3.974 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 16.895 -13.465 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.206 5.206 4 C -0.047 4.047 5 C -0.093 4.093 6 C 0.042 3.958 7 F -0.105 7.105 8 C 0.064 3.936 9 F -0.102 7.102 10 C -0.133 4.133 11 C -0.039 4.039 12 N -0.165 5.165 13 C -0.010 4.010 14 C 0.274 3.726 15 O -0.385 6.385 16 O -0.267 6.267 17 C 0.004 3.996 18 C -0.011 4.011 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.095 17.596 -13.178 22.567 hybrid contribution 0.642 -1.317 1.220 1.907 sum 5.737 16.279 -11.958 20.998 Atomic orbital electron populations 1.20515 0.83590 1.05551 1.04593 1.23800 0.96010 0.79889 0.95381 1.70487 1.00068 1.26808 1.23280 1.18574 0.92064 0.89476 1.04575 1.19906 0.87314 1.00982 1.01133 1.17057 0.82517 0.87600 1.08662 1.91537 1.46243 1.78407 1.94299 1.16976 0.81432 0.88364 1.06860 1.91550 1.43125 1.81476 1.94020 1.19605 0.87742 1.00755 1.05223 1.18318 0.84992 0.94782 1.05767 1.44859 1.04452 1.06464 1.60695 1.21274 1.05595 0.80382 0.93752 1.23567 0.75242 0.81971 0.91859 1.90730 1.45750 1.56186 1.45801 1.86519 1.76101 1.28654 1.35386 1.23774 1.01085 1.00026 0.74702 1.19184 0.97530 0.86427 0.98002 1.20948 1.46425 0.98308 0.91092 0.92238 1.24977 0.94881 0.96294 0.97890 1.69964 1.44534 1.06179 1.32057 0.86457 0.78653 0.77836 0.84310 1.20400 1.20960 1.19678 0.88604 0.89819 0.87889 0.82796 0.83544 0.84118 0.84654 0.92090 0.92027 0.95249 0.95263 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.95 36.00 0.36 -0.22 16 2 C 0.31 3.41 7.86 -154.81 -1.22 2.19 16 3 N -0.49 -6.22 11.27 -8.22 -0.09 -6.32 16 4 C 0.07 0.90 7.23 -84.68 -0.61 0.29 16 5 C -0.07 -0.80 10.07 -39.19 -0.39 -1.20 16 6 C 0.06 0.73 7.29 -39.42 -0.29 0.44 16 7 F -0.13 -1.47 17.16 2.25 0.04 -1.44 16 8 C 0.09 0.99 7.30 -39.33 -0.29 0.71 16 9 F -0.12 -1.50 17.17 2.25 0.04 -1.47 16 10 C -0.11 -1.24 10.01 -39.46 -0.40 -1.64 16 11 C 0.07 0.85 6.87 -83.96 -0.58 0.27 16 12 N -0.47 -5.18 2.30 -112.41 -0.26 -5.44 16 13 C 0.11 1.02 6.32 -5.19 -0.03 0.99 16 14 C 0.43 6.21 8.03 36.01 0.29 6.50 16 15 O -0.50 -8.89 16.18 -18.74 -0.30 -9.19 16 16 O -0.35 -5.95 10.22 -39.27 -0.40 -6.35 16 17 C 0.08 1.55 5.40 37.16 0.20 1.75 16 18 C 0.03 0.63 5.35 -27.88 -0.15 0.48 16 19 C -0.53 -14.30 9.11 -34.44 -0.31 -14.61 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 23 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.55 7.67 -51.93 -0.40 0.15 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.14 0.76 7.63 -51.93 -0.40 0.36 16 33 H 0.14 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -33.09 349.13 -7.66 -40.75 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -4.14 Total: -4.46 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.51 Total: -2.43 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.39 Total: -36.45 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.70 Total: -15.54 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.09 -7.66 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796006606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.160 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds