Wall clock time and date at job start Tue Mar 31 2020 13:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30100 * 124.95001 * 2 1 4 4 C 1.35834 * 109.65270 * 179.97438 * 3 2 1 5 5 C 1.39782 * 133.50389 * 180.02562 * 4 3 2 6 6 C 1.37732 * 119.78201 * 179.97438 * 5 4 3 7 7 F 1.35103 * 119.77046 * 180.02562 * 6 5 4 8 8 C 1.39176 * 120.45579 * 0.02562 * 6 5 4 9 9 F 1.35103 * 119.80927 * 179.97438 * 8 6 5 10 10 C 1.37979 * 120.38518 * 359.97438 * 8 6 5 11 11 C 1.38835 * 119.84342 * 0.02562 * 10 8 6 12 12 N 1.36066 * 124.95944 * 180.27785 * 2 1 3 13 13 C 1.46509 * 126.34983 * 0.05859 * 12 2 1 14 14 C 1.50702 * 109.46842 * 270.10693 * 13 12 2 15 15 O 1.20819 * 120.00323 * 0.02562 * 14 13 12 16 16 O 1.34235 * 119.99480 * 179.97438 * 14 13 12 17 17 C 1.45200 * 116.99604 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46746 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46637 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00386 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99845 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99668 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47114 * 89.99715 * 23 21 19 25 25 H 1.48502 * 109.47377 * 209.99744 * 23 21 19 26 26 H 1.48497 * 109.47040 * 329.99729 * 23 21 19 27 27 H 1.09000 * 109.47019 * 90.03069 * 1 2 3 28 28 H 1.09004 * 109.47229 * 210.02931 * 1 2 3 29 29 H 1.08998 * 109.47872 * 330.02823 * 1 2 3 30 30 H 1.08007 * 120.10950 * 0.02562 * 5 4 3 31 31 H 1.07998 * 120.08301 * 179.97438 * 10 8 6 32 32 H 1.08995 * 109.47230 * 30.10891 * 13 12 2 33 33 H 1.08999 * 109.46775 * 150.10803 * 13 12 2 34 34 H 1.08995 * 109.47097 * 300.00412 * 17 16 14 35 35 H 1.09000 * 109.47343 * 60.00481 * 17 16 14 36 36 H 1.08990 * 109.47064 * 300.00006 * 18 17 16 37 37 H 1.09000 * 109.46947 * 60.00066 * 18 17 16 38 38 H 0.97000 * 119.99646 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5625 0.7080 0.0006 5 6 4.7581 1.4321 0.0013 6 6 5.9625 0.7639 0.0023 7 9 7.1180 1.4640 0.0035 8 6 5.9974 -0.6274 0.0021 9 9 7.1862 -1.2694 0.0025 10 6 4.8250 -1.3549 0.0014 11 6 3.6030 -0.6960 0.0003 12 7 2.2866 -1.1151 -0.0054 13 6 1.8171 -2.5029 -0.0133 14 6 1.6525 -2.9856 1.4048 15 8 1.9012 -2.2462 2.3273 16 8 1.2284 -4.2367 1.6429 17 6 1.0923 -4.6332 3.0330 18 6 0.6026 -6.0810 3.1048 19 6 0.4608 -6.4923 4.5476 20 1 0.6960 -5.7912 5.3346 21 6 0.0307 -7.7638 4.8629 22 7 -0.2562 -8.6174 3.9044 23 14 -0.1458 -8.2735 6.6513 24 1 -1.5191 -7.9606 7.1220 25 1 0.1001 -9.7326 6.7768 26 1 0.8413 -7.5324 7.4769 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3635 0.8902 0.5134 30 1 4.7376 2.5120 0.0019 31 1 4.8578 -2.4344 0.0008 32 1 0.8590 -2.5594 -0.5300 33 1 2.5451 -3.1298 -0.5283 34 1 2.0588 -4.5519 3.5303 35 1 0.3729 -3.9810 3.5282 36 1 -0.3638 -6.1627 2.6074 37 1 1.3223 -6.7329 2.6097 38 1 -0.5591 -9.5118 4.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796006606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:46 Heat of formation + Delta-G solvation = -123.549312 kcal Electronic energy + Delta-G solvation = -26267.782317 eV Core-core repulsion = 21939.557951 eV Total energy + Delta-G solvation = -4328.224366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.57433 -49.65236 -43.55286 -41.49088 -38.33901 -37.79363 -35.55802 -35.44962 -32.53708 -32.25889 -31.68601 -29.39918 -28.43448 -26.96457 -24.12616 -23.72688 -23.29713 -22.48917 -21.18380 -19.49624 -19.28533 -19.06896 -18.33645 -18.16605 -17.77445 -17.66259 -17.42006 -16.82157 -16.57322 -16.36803 -16.08362 -16.04829 -15.52403 -15.22784 -14.75298 -14.70438 -14.45599 -14.39403 -14.06229 -13.83061 -13.63610 -13.35077 -13.11894 -13.08501 -12.85215 -12.64193 -12.61840 -12.33489 -11.97411 -11.82646 -11.54673 -11.53193 -11.34574 -11.28034 -10.62460 -9.52870 -9.34961 -8.29138 -6.41682 -0.55925 -0.15086 0.91066 0.96241 1.38853 1.41065 1.41500 1.52648 1.81663 2.30570 2.38294 2.53286 2.89187 3.01663 3.05976 3.35590 3.47474 3.51293 3.76363 3.87074 4.02790 4.04674 4.18322 4.20340 4.24691 4.48633 4.57731 4.62386 4.66547 4.66860 4.95110 4.97997 5.11962 5.20058 5.45983 5.46550 5.49414 5.71484 5.79503 6.04884 6.53482 6.58480 6.72147 7.28374 8.83045 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002578 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.272732 B =10856.975760 C =11875.192854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.314 3.686 3 N -0.515 5.515 4 C 0.053 3.947 5 C -0.072 4.072 6 C 0.060 3.940 7 F -0.130 7.130 8 C 0.075 3.925 9 F -0.129 7.129 10 C -0.109 4.109 11 C 0.057 3.943 12 N -0.476 5.476 13 C 0.121 3.879 14 C 0.436 3.564 15 O -0.535 6.535 16 O -0.353 6.353 17 C 0.094 3.906 18 C 0.032 3.968 19 C -0.552 4.552 20 H 0.062 0.938 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.266 1.266 27 H 0.127 0.873 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 17.127 -13.832 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.236 5.236 4 C -0.065 4.065 5 C -0.092 4.092 6 C 0.037 3.963 7 F -0.109 7.109 8 C 0.053 3.947 9 F -0.108 7.108 10 C -0.130 4.130 11 C -0.052 4.052 12 N -0.167 5.167 13 C -0.002 4.002 14 C 0.279 3.721 15 O -0.424 6.424 16 O -0.268 6.268 17 C 0.020 3.980 18 C -0.006 4.006 19 C -0.590 4.590 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.563 5.563 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.190 1.190 27 H 0.145 0.855 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.187 0.813 31 H 0.181 0.819 32 H 0.203 0.797 33 H 0.185 0.815 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.027 0.973 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.393 17.844 -13.563 22.840 hybrid contribution 0.851 -1.321 1.275 2.023 sum 5.243 16.523 -12.288 21.249 Atomic orbital electron populations 1.20738 0.80892 1.05883 1.06708 1.24574 0.97414 0.79473 0.93577 1.70483 1.00300 1.28019 1.24757 1.18881 0.92517 0.90171 1.04922 1.20050 0.86810 1.01789 1.00566 1.17120 0.82553 0.87631 1.08963 1.91524 1.46460 1.78493 1.94375 1.17101 0.81502 0.88542 1.07563 1.91531 1.43486 1.81582 1.94162 1.19745 0.87229 1.01573 1.04447 1.18512 0.85810 0.94844 1.06079 1.45014 1.03978 1.07172 1.60538 1.21671 1.08889 0.79646 0.89946 1.24622 0.73347 0.80297 0.93846 1.90726 1.47324 1.56734 1.47621 1.86496 1.76816 1.30614 1.32919 1.23171 1.00465 0.97558 0.76771 1.18973 0.96134 0.88823 0.96632 1.21367 1.46403 0.98777 0.92411 0.92000 1.25880 0.94391 0.96321 1.02366 1.70070 1.45319 1.06648 1.34277 0.85400 0.78963 0.77517 0.78915 1.19498 1.20446 1.19024 0.85463 0.89254 0.87713 0.81264 0.81859 0.79671 0.81509 0.92642 0.92002 0.96939 0.97303 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.95 71.23 0.71 -0.20 16 2 C 0.31 6.17 7.86 137.91 1.08 7.25 16 3 N -0.52 -12.61 11.27 -179.92 -2.03 -14.64 16 4 C 0.05 1.30 7.23 39.44 0.28 1.59 16 5 C -0.07 -1.55 10.07 22.52 0.23 -1.33 16 6 C 0.06 1.34 7.29 22.38 0.16 1.51 16 7 F -0.13 -3.01 17.16 44.97 0.77 -2.24 16 8 C 0.07 1.70 7.30 22.43 0.16 1.87 16 9 F -0.13 -3.11 17.17 44.97 0.77 -2.33 16 10 C -0.11 -2.29 10.01 22.35 0.22 -2.06 16 11 C 0.06 1.29 6.87 38.83 0.27 1.56 16 12 N -0.48 -9.29 2.30 -509.56 -1.17 -10.46 16 13 C 0.12 1.76 6.32 85.63 0.54 2.30 16 14 C 0.44 11.65 8.03 71.24 0.57 12.22 16 15 O -0.53 -18.56 16.18 21.99 0.36 -18.21 16 16 O -0.35 -11.49 10.22 -51.47 -0.53 -12.02 16 17 C 0.09 3.79 5.40 71.98 0.39 4.18 16 18 C 0.03 1.57 5.35 29.85 0.16 1.73 16 19 C -0.55 -29.94 9.11 25.60 0.23 -29.71 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 21 C 0.01 0.54 5.46 84.65 0.46 1.00 16 22 N -0.92 -53.18 13.29 21.45 0.28 -52.90 16 23 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H 0.13 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.09 0.89 7.67 -2.38 -0.02 0.88 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 32 H 0.19 1.09 7.63 -2.39 -0.02 1.08 16 33 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 35 H 0.06 2.48 8.13 -2.39 -0.02 2.47 16 36 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -72.62 349.13 7.07 -65.55 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.11 Total: 1.04 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.48 Total: 1.91 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.91 Total: -78.00 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.17 Total: -30.22 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 1.54 Total: -4.57 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -72.62 7.07 -65.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796006606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.003 kcal (2) G-P(sol) polarization free energy of solvation -72.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds