Wall clock time and date at job start Tue Mar 31 2020 13:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30090 * 124.95688 * 2 1 4 4 C 1.35834 * 109.65217 * 180.26715 * 3 2 1 5 5 C 1.39788 * 133.49671 * 179.75135 * 4 3 2 6 6 C 1.37735 * 119.77695 * 180.02562 * 5 4 3 7 7 F 1.35100 * 119.77115 * 179.97438 * 6 5 4 8 8 C 1.39177 * 120.45641 * 359.95398 * 6 5 4 9 9 F 1.35099 * 119.80639 * 180.02562 * 8 6 5 10 10 C 1.37981 * 120.38648 * 0.02562 * 8 6 5 11 11 C 1.38833 * 119.83971 * 0.02562 * 10 8 6 12 12 N 1.36075 * 124.95194 * 179.78696 * 2 1 3 13 13 C 1.46499 * 126.35162 * 359.97438 * 12 2 1 14 14 C 1.50702 * 109.47451 * 269.69050 * 13 12 2 15 15 O 1.20824 * 119.99533 * 359.97438 * 14 13 12 16 16 O 1.34222 * 120.00440 * 180.02562 * 14 13 12 17 17 C 1.45194 * 117.00395 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46869 * 30.00435 * 17 16 14 19 19 C 1.52997 * 109.47339 * 269.99953 * 17 16 14 20 20 C 1.50706 * 109.47297 * 149.99571 * 17 16 14 21 21 H 1.07998 * 119.99629 * 0.02562 * 20 17 16 22 22 C 1.37875 * 119.99955 * 179.97438 * 20 17 16 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.46754 * 90.00468 * 24 22 20 26 26 H 1.48498 * 109.47278 * 210.00299 * 24 22 20 27 27 H 1.48498 * 109.47109 * 330.00728 * 24 22 20 28 28 H 1.09000 * 109.47066 * 270.21276 * 1 2 3 29 29 H 1.09001 * 109.46809 * 30.21031 * 1 2 3 30 30 H 1.08995 * 109.47239 * 150.21186 * 1 2 3 31 31 H 1.08000 * 120.11886 * 0.03426 * 5 4 3 32 32 H 1.08004 * 120.08294 * 180.02562 * 10 8 6 33 33 H 1.09003 * 109.46922 * 149.69126 * 13 12 2 34 34 H 1.09000 * 109.46862 * 29.69002 * 13 12 2 35 35 H 1.09002 * 109.47153 * 59.99705 * 19 17 16 36 36 H 1.09001 * 109.46832 * 299.99896 * 19 17 16 37 37 H 1.09004 * 109.47261 * 179.97438 * 19 17 16 38 38 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0662 0.0000 4 6 3.5625 0.7077 -0.0060 5 6 4.7582 1.4318 -0.0130 6 6 5.9626 0.7635 -0.0185 7 9 7.1181 1.4635 -0.0258 8 6 5.9974 -0.6278 -0.0161 9 9 7.1860 -1.2698 -0.0211 10 6 4.8249 -1.3553 -0.0088 11 6 3.6030 -0.6962 -0.0043 12 7 2.2866 -1.1153 0.0041 13 6 1.8169 -2.5030 0.0098 14 6 1.6637 -2.9757 1.4326 15 8 1.9209 -2.2300 2.3478 16 8 1.2425 -4.2253 1.6830 17 6 1.1187 -4.6123 3.0769 18 1 0.8756 -3.7356 3.6771 19 6 2.4416 -5.2103 3.5597 20 6 0.0229 -5.6373 3.2182 21 1 -0.5253 -5.9652 2.3474 22 6 -0.2790 -6.1570 4.4591 23 7 0.3888 -5.7580 5.5194 24 14 -1.6368 -7.4279 4.6342 25 1 -1.0637 -8.7891 4.4786 26 1 -2.2608 -7.3040 5.9760 27 1 -2.6651 -7.2011 3.5871 28 1 -0.3633 0.0038 1.0277 29 1 -0.3633 0.8881 -0.5171 30 1 -0.3633 -0.8918 -0.5105 31 1 4.7378 2.5116 -0.0140 32 1 4.8577 -2.4348 -0.0066 33 1 2.5407 -3.1336 -0.5066 34 1 0.8547 -2.5629 -0.4986 35 1 3.2342 -4.4689 3.4574 36 1 2.6846 -6.0870 2.9593 37 1 2.3488 -5.5004 4.6063 38 1 0.1762 -6.1233 6.3924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796707185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:49 Heat of formation + Delta-G solvation = -101.078338 kcal Electronic energy + Delta-G solvation = -26966.910215 eV Core-core repulsion = 22639.660263 eV Total energy + Delta-G solvation = -4327.249951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.54836 -48.62413 -42.53832 -39.78246 -37.26677 -36.09972 -34.41795 -33.43497 -31.46269 -30.80976 -29.85349 -28.06845 -27.49677 -25.46609 -23.16020 -22.72939 -22.22182 -20.59870 -19.81930 -18.48198 -18.03399 -17.61716 -17.17040 -16.80649 -16.46025 -16.01743 -15.82258 -15.70277 -15.18871 -15.05285 -15.03837 -14.42939 -14.38624 -13.85694 -13.76173 -13.22417 -13.11908 -13.05822 -12.88934 -12.65756 -12.27030 -12.00033 -11.85967 -11.39554 -11.25264 -11.16232 -10.98195 -10.87290 -10.55198 -10.41232 -10.27160 -9.97007 -9.76885 -9.09598 -8.63726 -8.50358 -8.33287 -6.31713 -4.40309 0.42877 0.88862 2.01317 2.39624 2.53553 3.15828 3.19900 3.23821 3.31322 3.35557 3.52041 3.83951 4.00250 4.20377 4.28069 4.38872 4.70000 4.75452 4.85064 4.90876 5.01432 5.18142 5.26228 5.32017 5.35492 5.49281 5.57942 5.66518 5.94293 6.11937 6.43438 6.49045 6.69752 6.71577 6.75244 6.91579 7.41317 7.54529 7.57228 7.72922 7.95647 8.31687 8.68133 9.25888 10.75526 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.003107 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.778842 B = 9010.580218 C = 9991.827246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.315 3.685 3 N -0.490 5.490 4 C 0.072 3.928 5 C -0.074 4.074 6 C 0.063 3.937 7 F -0.127 7.127 8 C 0.083 3.917 9 F -0.125 7.125 10 C -0.110 4.110 11 C 0.071 3.929 12 N -0.471 5.471 13 C 0.111 3.889 14 C 0.432 3.568 15 O -0.500 6.500 16 O -0.351 6.351 17 C 0.218 3.782 18 H 0.048 0.952 19 C -0.156 4.156 20 C -0.526 4.526 21 H 0.070 0.930 22 C 0.064 3.936 23 N -0.887 5.887 24 Si 0.914 3.086 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.015 0.985 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 9.626 -14.015 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.210 5.210 4 C -0.047 4.047 5 C -0.094 4.094 6 C 0.040 3.960 7 F -0.106 7.106 8 C 0.061 3.939 9 F -0.103 7.103 10 C -0.131 4.131 11 C -0.038 4.038 12 N -0.161 5.161 13 C -0.012 4.012 14 C 0.272 3.728 15 O -0.389 6.389 16 O -0.266 6.266 17 C 0.166 3.834 18 H 0.065 0.935 19 C -0.214 4.214 20 C -0.564 4.564 21 H 0.088 0.912 22 C -0.139 4.139 23 N -0.524 5.524 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.037 10.474 -13.477 17.539 hybrid contribution 0.171 -1.623 0.492 1.704 sum 4.209 8.851 -12.985 16.269 Atomic orbital electron populations 1.20529 0.83653 1.04888 1.05229 1.23784 0.96009 0.79937 0.95210 1.70473 1.00027 1.26841 1.23619 1.18576 0.92084 0.89495 1.04537 1.19885 0.87332 1.00893 1.01307 1.17041 0.82469 0.87585 1.08879 1.91526 1.46295 1.78440 1.94347 1.16957 0.81382 0.88350 1.07195 1.91538 1.43181 1.81504 1.94085 1.19603 0.87776 1.00727 1.05032 1.18319 0.85056 0.94760 1.05698 1.44861 1.04381 1.06671 1.60209 1.21293 1.05100 0.80119 0.94730 1.23333 0.75579 0.82672 0.91246 1.90699 1.45798 1.56013 1.46384 1.86480 1.75236 1.27654 1.37251 1.20743 0.95059 0.95910 0.71697 0.93453 1.22183 0.95622 0.98567 1.04991 1.20985 1.17405 1.23537 0.94434 0.91170 1.24898 0.96981 0.96896 0.95124 1.69886 1.40344 1.42968 0.99236 0.86241 0.81135 0.80910 0.77671 1.20263 1.20884 1.19554 0.88453 0.88070 0.89733 0.82885 0.83614 0.85145 0.84534 0.96576 0.94252 0.88031 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.17 36.01 0.37 -0.38 16 2 C 0.32 4.04 7.86 -154.81 -1.22 2.83 16 3 N -0.49 -7.09 11.27 -8.22 -0.09 -7.19 16 4 C 0.07 1.02 7.23 -84.68 -0.61 0.41 16 5 C -0.07 -0.91 10.07 -39.19 -0.39 -1.31 16 6 C 0.06 0.80 7.29 -39.42 -0.29 0.51 16 7 F -0.13 -1.63 17.16 2.25 0.04 -1.59 16 8 C 0.08 1.08 7.30 -39.33 -0.29 0.79 16 9 F -0.12 -1.66 17.17 2.25 0.04 -1.63 16 10 C -0.11 -1.40 10.01 -39.46 -0.40 -1.80 16 11 C 0.07 0.99 6.87 -83.96 -0.58 0.41 16 12 N -0.47 -6.17 2.30 -112.42 -0.26 -6.43 16 13 C 0.11 1.29 6.53 -5.19 -0.03 1.25 16 14 C 0.43 7.73 8.00 36.01 0.29 8.02 16 15 O -0.50 -10.88 15.65 -18.75 -0.29 -11.18 16 16 O -0.35 -7.34 9.86 -39.24 -0.39 -7.73 16 17 C 0.22 5.47 2.56 -27.88 -0.07 5.40 16 18 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 19 C -0.16 -3.77 9.32 37.16 0.35 -3.42 16 20 C -0.53 -13.88 8.90 -34.44 -0.31 -14.19 16 21 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 24 Si 0.91 20.10 29.54 -169.99 -5.02 15.07 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.55 7.01 -51.93 -0.36 0.18 16 31 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.14 1.09 6.99 -51.93 -0.36 0.72 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -32.05 343.15 -7.37 -39.42 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.92 Total: -0.37 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.27 Total: 0.11 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.28 Total: -37.28 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.68 Total: -18.91 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.05 -7.37 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796707185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.659 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds