Wall clock time and date at job start Tue Mar 31 2020 13:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30090 * 124.95688 * 2 1 4 4 C 1.35834 * 109.65217 * 180.26715 * 3 2 1 5 5 C 1.39788 * 133.49671 * 179.75135 * 4 3 2 6 6 C 1.37735 * 119.77695 * 180.02562 * 5 4 3 7 7 F 1.35100 * 119.77115 * 179.97438 * 6 5 4 8 8 C 1.39177 * 120.45641 * 359.95398 * 6 5 4 9 9 F 1.35099 * 119.80639 * 180.02562 * 8 6 5 10 10 C 1.37981 * 120.38648 * 0.02562 * 8 6 5 11 11 C 1.38833 * 119.83971 * 0.02562 * 10 8 6 12 12 N 1.36075 * 124.95194 * 179.78696 * 2 1 3 13 13 C 1.46499 * 126.35162 * 359.97438 * 12 2 1 14 14 C 1.50702 * 109.47451 * 269.69050 * 13 12 2 15 15 O 1.20824 * 119.99533 * 359.97438 * 14 13 12 16 16 O 1.34222 * 120.00440 * 180.02562 * 14 13 12 17 17 C 1.45194 * 117.00395 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46869 * 30.00435 * 17 16 14 19 19 C 1.52997 * 109.47339 * 269.99953 * 17 16 14 20 20 C 1.50706 * 109.47297 * 149.99571 * 17 16 14 21 21 H 1.07998 * 119.99629 * 0.02562 * 20 17 16 22 22 C 1.37875 * 119.99955 * 179.97438 * 20 17 16 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.46754 * 90.00468 * 24 22 20 26 26 H 1.48498 * 109.47278 * 210.00299 * 24 22 20 27 27 H 1.48498 * 109.47109 * 330.00728 * 24 22 20 28 28 H 1.09000 * 109.47066 * 270.21276 * 1 2 3 29 29 H 1.09001 * 109.46809 * 30.21031 * 1 2 3 30 30 H 1.08995 * 109.47239 * 150.21186 * 1 2 3 31 31 H 1.08000 * 120.11886 * 0.03426 * 5 4 3 32 32 H 1.08004 * 120.08294 * 180.02562 * 10 8 6 33 33 H 1.09003 * 109.46922 * 149.69126 * 13 12 2 34 34 H 1.09000 * 109.46862 * 29.69002 * 13 12 2 35 35 H 1.09002 * 109.47153 * 59.99705 * 19 17 16 36 36 H 1.09001 * 109.46832 * 299.99896 * 19 17 16 37 37 H 1.09004 * 109.47261 * 179.97438 * 19 17 16 38 38 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0662 0.0000 4 6 3.5625 0.7077 -0.0060 5 6 4.7582 1.4318 -0.0130 6 6 5.9626 0.7635 -0.0185 7 9 7.1181 1.4635 -0.0258 8 6 5.9974 -0.6278 -0.0161 9 9 7.1860 -1.2698 -0.0211 10 6 4.8249 -1.3553 -0.0088 11 6 3.6030 -0.6962 -0.0043 12 7 2.2866 -1.1153 0.0041 13 6 1.8169 -2.5030 0.0098 14 6 1.6637 -2.9757 1.4326 15 8 1.9209 -2.2300 2.3478 16 8 1.2425 -4.2253 1.6830 17 6 1.1187 -4.6123 3.0769 18 1 0.8756 -3.7356 3.6771 19 6 2.4416 -5.2103 3.5597 20 6 0.0229 -5.6373 3.2182 21 1 -0.5253 -5.9652 2.3474 22 6 -0.2790 -6.1570 4.4591 23 7 0.3888 -5.7580 5.5194 24 14 -1.6368 -7.4279 4.6342 25 1 -1.0637 -8.7891 4.4786 26 1 -2.2608 -7.3040 5.9760 27 1 -2.6651 -7.2011 3.5871 28 1 -0.3633 0.0038 1.0277 29 1 -0.3633 0.8881 -0.5171 30 1 -0.3633 -0.8918 -0.5105 31 1 4.7378 2.5116 -0.0140 32 1 4.8577 -2.4348 -0.0066 33 1 2.5407 -3.1336 -0.5066 34 1 0.8547 -2.5629 -0.4986 35 1 3.2342 -4.4689 3.4574 36 1 2.6846 -6.0870 2.9593 37 1 2.3488 -5.5004 4.6063 38 1 0.1762 -6.1233 6.3924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796707185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:49 Heat of formation + Delta-G solvation = -117.999042 kcal Electronic energy + Delta-G solvation = -26967.643951 eV Core-core repulsion = 22639.660263 eV Total energy + Delta-G solvation = -4327.983688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.57151 -49.64846 -43.53267 -41.33034 -38.31047 -37.69367 -35.52667 -35.33451 -32.34891 -31.98680 -31.51717 -29.19529 -28.41975 -27.47493 -24.37444 -23.83103 -23.50010 -22.03859 -21.07019 -19.49771 -19.21307 -19.01229 -18.52933 -18.15947 -17.61324 -17.36080 -17.20843 -16.89720 -16.53592 -16.29605 -16.07721 -15.86368 -15.36469 -14.84638 -14.83974 -14.70687 -14.41876 -14.04404 -13.96001 -13.92102 -13.53947 -13.29130 -13.13439 -13.03863 -12.84443 -12.80581 -12.44062 -12.27870 -12.17156 -11.92758 -11.65009 -11.38786 -11.28428 -11.03612 -10.61949 -9.51803 -9.34290 -8.30200 -6.47554 -0.55290 -0.13758 0.98414 1.13006 1.41891 1.44304 1.44963 1.56514 1.99485 2.30939 2.39853 2.53901 2.89567 3.01491 3.02575 3.36263 3.51836 3.67944 3.80809 3.87256 4.00569 4.03970 4.26550 4.48257 4.49500 4.58567 4.62448 4.64523 4.72324 4.78669 4.96657 4.99185 5.08015 5.14080 5.46523 5.50147 5.58061 5.80365 5.87358 6.01577 6.56355 6.58581 6.81885 7.24412 8.77148 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.003107 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.778842 B = 9010.580218 C = 9991.827246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.313 3.687 3 N -0.515 5.515 4 C 0.053 3.947 5 C -0.071 4.071 6 C 0.060 3.940 7 F -0.129 7.129 8 C 0.075 3.925 9 F -0.128 7.128 10 C -0.109 4.109 11 C 0.056 3.944 12 N -0.475 5.475 13 C 0.122 3.878 14 C 0.430 3.570 15 O -0.544 6.544 16 O -0.351 6.351 17 C 0.222 3.778 18 H 0.007 0.993 19 C -0.144 4.144 20 C -0.546 4.546 21 H 0.075 0.925 22 C 0.016 3.984 23 N -0.919 5.919 24 Si 0.982 3.018 25 H -0.269 1.269 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.020 0.980 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 8.828 -15.808 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.236 5.236 4 C -0.066 4.066 5 C -0.092 4.092 6 C 0.038 3.962 7 F -0.107 7.107 8 C 0.054 3.946 9 F -0.107 7.107 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.165 5.165 13 C 0.000 4.000 14 C 0.272 3.728 15 O -0.435 6.435 16 O -0.267 6.267 17 C 0.169 3.831 18 H 0.025 0.975 19 C -0.202 4.202 20 C -0.583 4.583 21 H 0.093 0.907 22 C -0.184 4.184 23 N -0.557 5.557 24 Si 0.805 3.195 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.184 1.184 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.935 9.689 -15.302 18.347 hybrid contribution 0.553 -1.268 1.043 1.732 sum 3.488 8.421 -14.259 16.923 Atomic orbital electron populations 1.20751 0.81061 1.07344 1.05214 1.24544 0.97405 0.79549 0.93684 1.70466 1.00321 1.27938 1.24826 1.18899 0.92560 0.90137 1.04973 1.20048 0.86744 1.01788 1.00579 1.17086 0.82543 0.87575 1.08996 1.91521 1.46377 1.78468 1.94380 1.17067 0.81432 0.88548 1.07602 1.91526 1.43397 1.81585 1.94171 1.19744 0.87299 1.01534 1.04463 1.18542 0.85802 0.94924 1.06083 1.45013 1.04083 1.07245 1.60202 1.21630 1.08588 0.79682 0.90120 1.24601 0.73516 0.80990 0.93664 1.90691 1.47519 1.56669 1.48593 1.86453 1.76025 1.29724 1.34484 1.20335 0.95160 0.94166 0.73461 0.97501 1.22006 0.95534 0.98974 1.03693 1.21308 1.18077 1.23999 0.94927 0.90687 1.25836 0.99191 0.98752 0.94646 1.70021 1.41786 1.44125 0.99743 0.85185 0.78255 0.78298 0.77728 1.19418 1.20803 1.18395 0.89436 0.86222 0.86807 0.81149 0.82016 0.81640 0.80004 0.96129 0.93163 0.90347 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.17 71.24 0.72 -0.59 16 2 C 0.31 7.49 7.86 137.91 1.08 8.58 16 3 N -0.52 -14.48 11.27 -179.92 -2.03 -16.51 16 4 C 0.05 1.47 7.23 39.44 0.28 1.75 16 5 C -0.07 -1.73 10.07 22.53 0.23 -1.50 16 6 C 0.06 1.50 7.29 22.38 0.16 1.67 16 7 F -0.13 -3.22 17.16 44.97 0.77 -2.45 16 8 C 0.08 1.91 7.30 22.43 0.16 2.07 16 9 F -0.13 -3.35 17.17 44.97 0.77 -2.58 16 10 C -0.11 -2.66 10.01 22.35 0.22 -2.44 16 11 C 0.06 1.48 6.87 38.83 0.27 1.75 16 12 N -0.48 -11.47 2.30 -509.58 -1.17 -12.64 16 13 C 0.12 2.44 6.53 85.63 0.56 2.99 16 14 C 0.43 14.85 8.00 71.24 0.57 15.42 16 15 O -0.54 -23.84 15.65 21.97 0.34 -23.50 16 16 O -0.35 -14.39 9.86 -51.34 -0.51 -14.89 16 17 C 0.22 11.27 2.56 29.85 0.08 11.35 16 18 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 19 C -0.14 -7.05 9.32 71.98 0.67 -6.38 16 20 C -0.55 -28.73 8.90 25.60 0.23 -28.50 16 21 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 22 C 0.02 0.81 5.30 84.65 0.45 1.26 16 23 N -0.92 -51.05 11.32 21.45 0.24 -50.81 16 24 Si 0.98 40.54 29.54 68.60 2.03 42.57 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 26 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.03 7.01 -2.39 -0.02 1.02 16 31 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.17 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.18 2.00 6.99 -2.39 -0.02 1.98 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 4.20 6.07 -2.38 -0.01 4.19 16 38 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -71.39 343.15 7.26 -64.13 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.12 Total: 9.24 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.69 Total: 7.44 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.96 Total: -79.95 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.16 Total: -38.39 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.54 Total: -5.03 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -71.39 7.26 -64.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796707185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.866 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds