Wall clock time and date at job start Tue Mar 31 2020 14:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46931 * 2 1 4 4 H 1.08998 * 109.46945 * 304.99822 * 3 2 1 5 5 N 1.46497 * 109.46845 * 65.00239 * 3 2 1 6 6 C 1.34780 * 119.99968 * 274.99396 * 5 3 2 7 7 S 1.71199 * 119.99936 * 0.28185 * 6 5 3 8 8 N 1.34770 * 119.99884 * 179.97438 * 6 5 3 9 9 C 1.46503 * 119.99799 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46910 * 180.58603 * 9 8 6 11 11 C 1.50704 * 115.55252 * 65.13188 * 10 9 8 12 12 H 1.07994 * 119.99763 * 265.41056 * 11 10 9 13 13 C 1.37875 * 119.99655 * 85.40446 * 11 10 9 14 14 N 1.31509 * 120.00536 * 353.50144 * 13 11 10 15 15 Si 1.86803 * 119.99484 * 173.49686 * 13 11 10 16 16 H 1.48503 * 109.47117 * 60.00264 * 15 13 11 17 17 H 1.48504 * 109.46940 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47286 * 300.00244 * 15 13 11 19 19 C 1.53005 * 117.50045 * 279.45949 * 10 9 8 20 20 C 1.53004 * 117.50034 * 210.79911 * 10 9 8 21 21 C 1.50701 * 109.46956 * 185.00117 * 3 2 1 22 22 C 1.33383 * 125.20292 * 99.71847 * 21 3 2 23 23 C 1.38420 * 114.92194 * 179.86050 * 22 21 3 24 24 C 1.33385 * 114.92132 * 0.43077 * 23 22 21 25 25 S 1.75877 * 125.20274 * 280.02698 * 21 3 2 26 26 H 1.08998 * 109.46856 * 299.99971 * 1 2 3 27 27 H 1.09001 * 109.47065 * 59.99665 * 1 2 3 28 28 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46843 * 240.00584 * 2 1 3 30 30 H 1.08993 * 109.47229 * 120.00104 * 2 1 3 31 31 H 0.96996 * 120.00116 * 95.00451 * 5 3 2 32 32 H 0.96996 * 120.00199 * 0.02562 * 8 6 5 33 33 H 1.08992 * 109.47343 * 300.58545 * 9 8 6 34 34 H 1.09002 * 109.46712 * 60.59029 * 9 8 6 35 35 H 0.96996 * 120.00638 * 185.06957 * 14 13 11 36 36 H 1.08999 * 117.49350 * 0.02562 * 19 10 9 37 37 H 1.09002 * 117.49654 * 145.02419 * 19 10 9 38 38 H 1.08996 * 117.50071 * 214.98280 * 20 10 9 39 39 H 1.09005 * 117.49449 * 359.97438 * 20 10 9 40 40 H 1.08007 * 122.54051 * 0.02562 * 22 21 3 41 41 H 1.08004 * 122.54257 * 180.20074 * 23 22 21 42 42 H 1.08007 * 125.20429 * 179.75348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 16 -0.6609 2.6130 0.0528 8 7 0.0784 3.2664 2.5188 9 6 -1.2450 3.8822 2.6441 10 6 -1.3888 4.5033 4.0350 11 6 -0.4666 5.6582 4.3297 12 1 0.4720 5.4844 4.8348 13 6 -0.8212 6.9366 3.9543 14 7 -1.8998 7.1335 3.2281 15 14 0.2306 8.3891 4.4774 16 1 1.6045 8.2250 3.9383 17 1 -0.3612 9.6445 3.9490 18 1 0.2848 8.4525 5.9600 19 6 -1.7421 3.5681 5.1933 20 6 -2.7894 4.5432 4.6496 21 6 3.5419 1.4444 -0.1239 22 6 4.2202 1.6605 -1.2519 23 6 5.5975 1.6163 -1.1219 24 6 6.0377 1.3555 0.1100 25 16 4.6684 1.1544 1.1953 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2720 2.1232 1.9977 32 1 0.6979 3.2920 3.2648 33 1 -1.3582 4.6576 1.8866 34 1 -2.0139 3.1224 2.5043 35 1 -2.1094 8.0226 2.9021 36 1 -1.8717 2.5103 4.9644 37 1 -1.3078 3.7884 6.1685 38 1 -3.0437 5.4045 5.2672 39 1 -3.6085 4.1273 4.0627 40 1 3.7317 1.8577 -2.1948 41 1 6.2652 1.7770 -1.9554 42 1 7.0762 1.2792 0.3969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797408527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:31 Heat of formation + Delta-G solvation = 59.691710 kcal Electronic energy + Delta-G solvation = -22746.071291 eV Core-core repulsion = 19558.219205 eV Total energy + Delta-G solvation = -3187.852087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55121 -39.19565 -38.25171 -36.43954 -34.02511 -33.22302 -31.17468 -28.43046 -27.43341 -26.48706 -24.52363 -24.21367 -22.93369 -22.47920 -21.37988 -20.41889 -19.28756 -18.83439 -17.83459 -17.27977 -16.74080 -16.43057 -16.38346 -16.12379 -15.83514 -15.44813 -14.75153 -14.49548 -14.43382 -14.14303 -13.63630 -13.54589 -13.48476 -13.18252 -12.98713 -12.85512 -12.72159 -12.49712 -12.39397 -12.32848 -12.19021 -12.04679 -11.74553 -11.59449 -11.47498 -10.88111 -10.48654 -10.17231 -9.96241 -9.65231 -9.44245 -8.73618 -8.13417 -8.10842 -6.25801 -0.02975 0.51144 0.58045 0.96594 1.05381 1.40536 1.43046 1.48802 1.60706 1.87471 2.39796 2.68143 3.16564 3.43928 3.48368 4.01507 4.17752 4.19018 4.24442 4.46744 4.52775 4.56588 4.62986 4.67611 4.69275 4.72301 4.86659 4.96176 4.97998 5.05239 5.14096 5.17957 5.27023 5.32267 5.37559 5.51825 5.55109 5.60443 5.68298 5.74501 5.80210 5.96860 6.32285 6.48510 6.80757 7.44448 8.94935 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.003758 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.625453 B = 7449.437730 C = 8564.956568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.225 3.775 4 H 0.110 0.890 5 N -0.674 5.674 6 C 0.574 3.426 7 S -0.710 6.710 8 N -0.644 5.644 9 C 0.190 3.810 10 C 0.003 3.997 11 C -0.512 4.512 12 H 0.061 0.939 13 C 0.031 3.969 14 N -0.900 5.900 15 Si 0.944 3.056 16 H -0.274 1.274 17 H -0.291 1.291 18 H -0.270 1.270 19 C -0.178 4.178 20 C -0.153 4.153 21 C -0.207 4.207 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.204 4.204 25 S 0.091 5.909 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.404 0.596 32 H 0.408 0.592 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.260 0.740 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.095 -14.470 -4.232 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.119 3.881 4 H 0.128 0.872 5 N -0.307 5.307 6 C 0.209 3.791 7 S -0.586 6.586 8 N -0.269 5.269 9 C 0.067 3.933 10 C 0.002 3.998 11 C -0.549 4.549 12 H 0.079 0.921 13 C -0.171 4.171 14 N -0.537 5.537 15 Si 0.771 3.229 16 H -0.200 1.200 17 H -0.217 1.217 18 H -0.195 1.195 19 C -0.215 4.215 20 C -0.192 4.192 21 C -0.325 4.325 22 C -0.153 4.153 23 C -0.171 4.171 24 C -0.339 4.339 25 S 0.355 5.645 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.242 0.758 32 H 0.246 0.754 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.183 0.817 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 14.990 -14.622 -3.623 21.251 hybrid contribution 1.286 1.647 -0.030 2.090 sum 16.276 -12.974 -3.653 21.133 Atomic orbital electron populations 1.22154 0.94712 0.99449 1.03191 1.21884 0.96533 0.93366 1.03311 1.19727 0.87195 0.94947 0.86229 0.87208 1.44986 1.12528 1.55391 1.17763 1.21731 0.87120 0.80931 0.89297 1.93279 1.52240 1.81280 1.31776 1.45009 1.18996 1.50918 1.11966 1.20939 0.79786 0.94464 0.98157 1.19081 0.96324 0.95775 0.88623 1.20582 1.04430 0.90691 1.39210 0.92056 1.25628 0.95674 1.01020 0.94730 1.70070 1.26225 1.22821 1.34574 0.85839 0.79063 0.79202 0.78838 1.19966 1.21721 1.19503 1.23038 1.04463 0.95109 0.98929 1.22422 0.92753 1.00069 1.03920 1.24526 0.97618 1.11988 0.98349 1.20410 0.94318 1.01510 0.99103 1.20442 0.94986 1.03104 0.98524 1.26009 1.02997 1.08575 0.96342 1.84235 0.97220 1.70336 1.12746 0.94306 0.91755 0.93722 0.89054 0.91456 0.75800 0.75418 0.92991 0.92631 0.93106 0.89222 0.89625 0.91749 0.90847 0.83053 0.81739 0.79378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.08 71.98 0.58 -3.19 16 2 C -0.11 -2.42 5.59 30.60 0.17 -2.25 16 3 C 0.23 5.31 2.64 44.25 0.12 5.43 16 4 H 0.11 3.12 6.80 -2.39 -0.02 3.11 16 5 N -0.67 -17.50 5.02 -333.14 -1.67 -19.18 16 6 C 0.57 19.54 6.74 179.06 1.21 20.74 16 7 S -0.71 -29.23 22.48 -56.49 -1.27 -30.50 16 8 N -0.64 -22.78 5.47 -350.17 -1.92 -24.70 16 9 C 0.19 8.18 4.96 86.38 0.43 8.61 16 10 C 0.00 0.13 1.37 -52.92 -0.07 0.06 16 11 C -0.51 -25.10 8.66 25.60 0.22 -24.88 16 12 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 13 C 0.03 1.62 5.39 84.66 0.46 2.08 16 14 N -0.90 -49.92 12.92 21.45 0.28 -49.64 16 15 Si 0.94 41.48 29.55 68.60 2.03 43.51 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 C -0.18 -6.70 9.96 30.62 0.30 -6.40 16 20 C -0.15 -6.72 9.42 30.62 0.29 -6.43 16 21 C -0.21 -4.07 5.45 24.59 0.13 -3.94 16 22 C -0.12 -2.14 10.04 21.21 0.21 -1.93 16 23 C -0.14 -2.01 10.18 21.21 0.22 -1.79 16 24 C -0.20 -2.80 11.23 66.72 0.75 -2.05 16 25 S 0.09 1.51 22.31 -56.49 -1.26 0.25 16 26 H 0.04 1.25 5.28 -7.69 -0.04 1.21 16 27 H 0.06 2.04 6.48 -5.19 -0.03 2.01 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.40 8.81 7.69 -92.71 -0.71 8.10 16 32 H 0.41 12.78 8.41 -92.71 -0.78 12.00 16 33 H 0.05 2.70 7.98 -2.39 -0.02 2.68 16 34 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 35 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -61.72 366.66 0.70 -61.02 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.50 Total: 35.16 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 5.01 Total: -15.93 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -3.31 Total: -93.52 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -27.71 SS G_CDS: -2.53 Total: -30.24 kcal Total: -61.72 0.70 -61.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.715 kcal (2) G-P(sol) polarization free energy of solvation -61.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds