Wall clock time and date at job start Tue Mar 31 2020 14:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 H 1.09002 * 109.47007 * 54.99739 * 3 2 1 5 5 N 1.46504 * 109.46963 * 294.99886 * 3 2 1 6 6 C 1.34775 * 120.00029 * 84.99644 * 5 3 2 7 7 S 1.71199 * 119.99943 * 9.01544 * 6 5 3 8 8 N 1.34777 * 120.00012 * 189.01350 * 6 5 3 9 9 C 1.46499 * 120.00181 * 184.78004 * 8 6 5 10 10 C 1.52990 * 109.47200 * 183.28212 * 9 8 6 11 11 C 1.50705 * 115.55369 * 306.00526 * 10 9 8 12 12 H 1.08001 * 119.99740 * 114.34374 * 11 10 9 13 13 C 1.37871 * 119.99864 * 294.07826 * 11 10 9 14 14 N 1.31516 * 119.99970 * 167.95687 * 13 11 10 15 15 Si 1.86800 * 120.00178 * 347.95310 * 13 11 10 16 16 H 1.48501 * 109.47156 * 91.38826 * 15 13 11 17 17 H 1.48498 * 109.47163 * 211.39273 * 15 13 11 18 18 H 1.48499 * 109.47216 * 331.39087 * 15 13 11 19 19 C 1.53001 * 117.50129 * 91.68067 * 10 9 8 20 20 C 1.53005 * 117.50077 * 160.33671 * 10 9 8 21 21 C 1.50694 * 109.47397 * 174.99695 * 3 2 1 22 22 C 1.33390 * 125.20697 * 260.00137 * 21 3 2 23 23 C 1.38414 * 114.92647 * 179.97438 * 22 21 3 24 24 C 1.33392 * 114.92131 * 359.97438 * 23 22 21 25 25 S 1.75883 * 125.20172 * 79.69578 * 21 3 2 26 26 H 1.09000 * 109.47172 * 60.00210 * 1 2 3 27 27 H 1.09006 * 109.46769 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47076 * 300.00091 * 1 2 3 29 29 H 1.08995 * 109.47740 * 239.99912 * 2 1 3 30 30 H 1.09004 * 109.47095 * 119.99277 * 2 1 3 31 31 H 0.96998 * 119.99705 * 265.00097 * 5 3 2 32 32 H 0.96992 * 119.99869 * 4.78358 * 8 6 5 33 33 H 1.09002 * 109.47060 * 63.27813 * 9 8 6 34 34 H 1.09007 * 109.47276 * 303.28771 * 9 8 6 35 35 H 0.97002 * 119.99619 * 180.02562 * 14 13 11 36 36 H 1.09004 * 117.49776 * 215.00541 * 19 10 9 37 37 H 1.09008 * 117.49447 * 0.02562 * 19 10 9 38 38 H 1.09005 * 117.49618 * 359.97368 * 20 10 9 39 39 H 1.08995 * 117.50139 * 144.97412 * 20 10 9 40 40 H 1.08007 * 122.53318 * 359.97438 * 22 21 3 41 41 H 1.08003 * 122.54348 * 180.02562 * 23 22 21 42 42 H 1.07995 * 125.20789 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0975 -1.2519 6 6 0.4352 2.6643 -1.3671 7 16 -0.5681 2.8250 0.0108 8 7 0.0077 3.1047 -2.5670 9 6 -1.2694 3.8144 -2.6743 10 6 -1.5554 4.1303 -4.1437 11 6 -0.4655 4.8729 -4.8731 12 1 0.0644 4.3948 -5.6836 13 6 -0.1488 6.1644 -4.5091 14 7 0.9447 6.7289 -4.9729 15 14 -1.2730 7.1126 -3.3573 16 1 -0.8331 6.9049 -1.9542 17 1 -1.2121 8.5594 -3.6862 18 1 -2.6674 6.6272 -3.5158 19 6 -2.3693 3.1087 -4.9405 20 6 -3.0027 4.4406 -4.5309 21 6 3.5419 1.4443 0.1239 22 6 4.2203 1.6656 1.2509 23 6 5.5975 1.6168 1.1219 24 6 6.0378 1.3553 -0.1099 25 16 4.6683 1.1475 -1.1939 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.2720 2.1231 -1.9978 32 1 0.5456 2.9517 -3.3594 33 1 -1.2177 4.7434 -2.1064 34 1 -2.0676 3.1886 -2.2751 35 1 1.1677 7.6375 -4.7165 36 1 -2.1164 2.9736 -5.9921 37 1 -2.7014 2.2117 -4.4176 38 1 -3.7512 4.4193 -3.7388 39 1 -3.1666 5.1821 -5.3128 40 1 3.7318 1.8676 2.1928 41 1 6.2652 1.7774 1.9555 42 1 7.0761 1.2797 -0.3970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797408528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:35 Heat of formation + Delta-G solvation = 72.676332 kcal Electronic energy + Delta-G solvation = -22962.204628 eV Core-core repulsion = 19774.915596 eV Total energy + Delta-G solvation = -3187.289031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.38875 -38.10552 -37.16369 -35.19107 -32.32300 -32.13052 -30.29498 -27.27256 -26.00404 -25.05895 -23.41559 -23.15562 -21.70277 -21.44796 -19.82198 -19.26458 -18.21465 -17.59432 -16.57309 -16.01631 -15.62695 -15.43690 -15.05052 -14.74157 -14.43101 -13.76654 -13.61953 -13.44016 -13.24573 -12.90158 -12.85716 -12.68693 -12.41016 -12.26849 -11.67823 -11.44550 -11.38980 -11.15002 -11.00169 -10.91811 -10.77200 -10.64611 -10.51602 -10.37096 -9.67511 -9.25633 -9.04404 -8.87633 -8.68662 -8.59064 -8.53736 -7.29313 -6.89449 -6.31839 -4.34967 0.74406 1.36275 1.75818 1.84283 2.34834 2.53559 2.99299 3.24790 3.35240 3.40788 3.95683 4.30660 4.34088 4.77706 4.84737 4.96335 5.05850 5.15070 5.22884 5.35689 5.48514 5.53643 5.68430 5.81346 5.85875 5.91544 6.00478 6.05036 6.09690 6.15220 6.16824 6.24071 6.29318 6.38949 6.45595 6.62150 6.73192 6.76320 6.93156 7.01205 7.27241 7.54348 7.78165 8.27154 8.69504 9.32835 10.78190 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.004022 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.592596 B = 6959.316662 C = 7786.475641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.219 3.781 4 H 0.136 0.864 5 N -0.694 5.694 6 C 0.567 3.433 7 S -0.668 6.668 8 N -0.640 5.640 9 C 0.156 3.844 10 C -0.024 4.024 11 C -0.503 4.503 12 H 0.077 0.923 13 C 0.089 3.911 14 N -0.885 5.885 15 Si 0.858 3.142 16 H -0.272 1.272 17 H -0.290 1.290 18 H -0.245 1.245 19 C -0.181 4.181 20 C -0.179 4.179 21 C -0.186 4.186 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.210 4.210 25 S 0.098 5.902 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.395 0.605 32 H 0.408 0.592 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.267 0.733 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -12.946 8.669 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.111 3.889 4 H 0.153 0.847 5 N -0.327 5.327 6 C 0.204 3.796 7 S -0.544 6.544 8 N -0.264 5.264 9 C 0.033 3.967 10 C -0.026 4.026 11 C -0.539 4.539 12 H 0.095 0.905 13 C -0.116 4.116 14 N -0.521 5.521 15 Si 0.685 3.315 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.168 1.168 19 C -0.218 4.218 20 C -0.217 4.217 21 C -0.304 4.304 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.346 4.346 25 S 0.362 5.638 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.232 0.768 32 H 0.246 0.754 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.638 -12.940 8.042 16.619 hybrid contribution 0.976 0.950 0.513 1.456 sum 7.614 -11.989 8.555 16.581 Atomic orbital electron populations 1.22153 0.93472 1.00219 1.04653 1.21958 0.98027 0.93986 1.02275 1.19829 0.86157 0.94712 0.88173 0.84698 1.44948 1.13509 1.57233 1.17051 1.22042 0.85938 0.80546 0.91102 1.93098 1.56479 1.78812 1.25992 1.45169 1.23188 1.51979 1.06084 1.21476 0.81896 0.95810 0.97534 1.19644 0.92034 1.00024 0.90873 1.20186 1.16916 0.98335 1.18512 0.90497 1.24912 0.94142 0.97394 0.95201 1.69918 1.22734 1.14828 1.44581 0.87112 0.83812 0.79162 0.81434 1.19808 1.21672 1.16840 1.22867 1.06262 0.92258 1.00439 1.23017 0.96973 0.98680 1.03012 1.24689 0.98481 1.09849 0.97339 1.20128 0.93506 1.02695 0.99021 1.20181 0.95295 1.03319 0.97576 1.25643 1.02305 1.09823 0.96799 1.84332 0.96823 1.69791 1.12878 0.92462 0.94165 0.89918 0.92285 0.90576 0.76798 0.75363 0.90779 0.90697 0.92303 0.89642 0.90728 0.90761 0.89188 0.83740 0.84045 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.26 37.16 0.31 -1.64 16 2 C -0.12 -1.39 5.59 -26.73 -0.15 -1.54 16 3 C 0.22 2.73 2.64 -69.08 -0.18 2.54 16 4 H 0.14 1.93 6.59 -51.93 -0.34 1.58 16 5 N -0.69 -9.77 5.02 -56.65 -0.28 -10.05 16 6 C 0.57 9.79 6.35 -86.92 -0.55 9.24 16 7 S -0.67 -13.15 23.53 -107.50 -2.53 -15.68 16 8 N -0.64 -11.62 5.41 -62.03 -0.34 -11.96 16 9 C 0.16 3.14 4.78 -4.05 -0.02 3.12 16 10 C -0.02 -0.51 1.00 -155.66 -0.16 -0.66 16 11 C -0.50 -12.48 8.59 -34.44 -0.30 -12.78 16 12 H 0.08 2.08 8.06 -52.49 -0.42 1.66 16 13 C 0.09 2.34 5.45 -17.82 -0.10 2.24 16 14 N -0.89 -25.09 13.96 55.43 0.77 -24.31 16 15 Si 0.86 20.49 25.35 -169.99 -4.31 16.18 16 16 H -0.27 -6.71 6.95 56.52 0.39 -6.32 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.25 -5.48 5.59 56.52 0.32 -5.16 16 19 C -0.18 -3.32 9.92 -26.70 -0.26 -3.58 16 20 C -0.18 -3.49 7.70 -26.69 -0.21 -3.69 16 21 C -0.19 -2.08 5.44 -36.01 -0.20 -2.28 16 22 C -0.12 -1.25 10.04 -41.21 -0.41 -1.66 16 23 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 24 C -0.21 -1.91 11.23 29.04 0.33 -1.59 16 25 S 0.10 1.01 22.32 -107.50 -2.40 -1.39 16 26 H 0.06 0.88 5.59 -51.93 -0.29 0.59 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.22 6.79 -51.93 -0.35 0.86 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.40 5.11 7.73 -40.82 -0.32 4.80 16 32 H 0.41 7.15 7.99 -40.82 -0.33 6.82 16 33 H 0.07 1.67 5.58 -51.93 -0.29 1.39 16 34 H 0.07 1.46 7.70 -51.93 -0.40 1.06 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 42 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -29.01 357.91 -12.21 -41.22 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.20 Total: 14.51 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.32 Total: -13.92 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.15 Total: -46.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.31 Total: 16.18 kcal Atomic # 16 Polarization: -12.14 SS G_CDS: -4.93 Total: -17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.01 -12.21 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.893 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds