Wall clock time and date at job start Tue Mar 31 2020 14:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 H 1.09002 * 109.47007 * 54.99739 * 3 2 1 5 5 N 1.46504 * 109.46963 * 294.99886 * 3 2 1 6 6 C 1.34775 * 120.00029 * 84.99644 * 5 3 2 7 7 S 1.71199 * 119.99943 * 9.01544 * 6 5 3 8 8 N 1.34777 * 120.00012 * 189.01350 * 6 5 3 9 9 C 1.46499 * 120.00181 * 184.78004 * 8 6 5 10 10 C 1.52990 * 109.47200 * 183.28212 * 9 8 6 11 11 C 1.50705 * 115.55369 * 306.00526 * 10 9 8 12 12 H 1.08001 * 119.99740 * 114.34374 * 11 10 9 13 13 C 1.37871 * 119.99864 * 294.07826 * 11 10 9 14 14 N 1.31516 * 119.99970 * 167.95687 * 13 11 10 15 15 Si 1.86800 * 120.00178 * 347.95310 * 13 11 10 16 16 H 1.48501 * 109.47156 * 91.38826 * 15 13 11 17 17 H 1.48498 * 109.47163 * 211.39273 * 15 13 11 18 18 H 1.48499 * 109.47216 * 331.39087 * 15 13 11 19 19 C 1.53001 * 117.50129 * 91.68067 * 10 9 8 20 20 C 1.53005 * 117.50077 * 160.33671 * 10 9 8 21 21 C 1.50694 * 109.47397 * 174.99695 * 3 2 1 22 22 C 1.33390 * 125.20697 * 260.00137 * 21 3 2 23 23 C 1.38414 * 114.92647 * 179.97438 * 22 21 3 24 24 C 1.33392 * 114.92131 * 359.97438 * 23 22 21 25 25 S 1.75883 * 125.20172 * 79.69578 * 21 3 2 26 26 H 1.09000 * 109.47172 * 60.00210 * 1 2 3 27 27 H 1.09006 * 109.46769 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47076 * 300.00091 * 1 2 3 29 29 H 1.08995 * 109.47740 * 239.99912 * 2 1 3 30 30 H 1.09004 * 109.47095 * 119.99277 * 2 1 3 31 31 H 0.96998 * 119.99705 * 265.00097 * 5 3 2 32 32 H 0.96992 * 119.99869 * 4.78358 * 8 6 5 33 33 H 1.09002 * 109.47060 * 63.27813 * 9 8 6 34 34 H 1.09007 * 109.47276 * 303.28771 * 9 8 6 35 35 H 0.97002 * 119.99619 * 180.02562 * 14 13 11 36 36 H 1.09004 * 117.49776 * 215.00541 * 19 10 9 37 37 H 1.09008 * 117.49447 * 0.02562 * 19 10 9 38 38 H 1.09005 * 117.49618 * 359.97368 * 20 10 9 39 39 H 1.08995 * 117.50139 * 144.97412 * 20 10 9 40 40 H 1.08007 * 122.53318 * 359.97438 * 22 21 3 41 41 H 1.08003 * 122.54348 * 180.02562 * 23 22 21 42 42 H 1.07995 * 125.20789 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0975 -1.2519 6 6 0.4352 2.6643 -1.3671 7 16 -0.5681 2.8250 0.0108 8 7 0.0077 3.1047 -2.5670 9 6 -1.2694 3.8144 -2.6743 10 6 -1.5554 4.1303 -4.1437 11 6 -0.4655 4.8729 -4.8731 12 1 0.0644 4.3948 -5.6836 13 6 -0.1488 6.1644 -4.5091 14 7 0.9447 6.7289 -4.9729 15 14 -1.2730 7.1126 -3.3573 16 1 -0.8331 6.9049 -1.9542 17 1 -1.2121 8.5594 -3.6862 18 1 -2.6674 6.6272 -3.5158 19 6 -2.3693 3.1087 -4.9405 20 6 -3.0027 4.4406 -4.5309 21 6 3.5419 1.4443 0.1239 22 6 4.2203 1.6656 1.2509 23 6 5.5975 1.6168 1.1219 24 6 6.0378 1.3553 -0.1099 25 16 4.6683 1.1475 -1.1939 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.2720 2.1231 -1.9978 32 1 0.5456 2.9517 -3.3594 33 1 -1.2177 4.7434 -2.1064 34 1 -2.0676 3.1886 -2.2751 35 1 1.1677 7.6375 -4.7165 36 1 -2.1164 2.9736 -5.9921 37 1 -2.7014 2.2117 -4.4176 38 1 -3.7512 4.4193 -3.7388 39 1 -3.1666 5.1821 -5.3128 40 1 3.7318 1.8676 2.1928 41 1 6.2652 1.7774 1.9555 42 1 7.0761 1.2797 -0.3970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797408528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:34 Heat of formation + Delta-G solvation = 56.852504 kcal Electronic energy + Delta-G solvation = -22962.890800 eV Core-core repulsion = 19774.915596 eV Total energy + Delta-G solvation = -3187.975204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61654 -39.33336 -38.33755 -36.48640 -34.32950 -33.31609 -31.19434 -28.71963 -27.50844 -26.50521 -24.54464 -24.23393 -23.20911 -22.50233 -21.26449 -20.41745 -19.29616 -19.02831 -18.03354 -17.34747 -17.04146 -16.49287 -16.39242 -16.06233 -15.84350 -15.31373 -14.96705 -14.68042 -14.54850 -14.20898 -14.12331 -13.61356 -13.59885 -13.31904 -13.02087 -12.91800 -12.63552 -12.45089 -12.39083 -12.27145 -12.16385 -12.13536 -11.79758 -11.63568 -11.50396 -11.01996 -10.68427 -10.43461 -10.01989 -9.66804 -9.46582 -8.81437 -8.41386 -8.36908 -6.39853 -0.04025 0.43276 0.56433 0.92619 1.02215 1.32191 1.40576 1.48536 1.57322 1.85929 2.32841 2.59027 2.97067 3.30699 3.42054 3.94753 3.97960 4.16207 4.22592 4.28487 4.41334 4.45220 4.53665 4.56682 4.63176 4.68476 4.72069 4.91013 4.91683 4.93974 5.04775 5.08676 5.14753 5.20257 5.29532 5.33077 5.49784 5.51937 5.57270 5.63809 5.66671 5.90165 6.24371 6.39497 6.67425 7.29535 8.75864 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.004022 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.592596 B = 6959.316662 C = 7786.475641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.221 3.779 4 H 0.118 0.882 5 N -0.678 5.678 6 C 0.578 3.422 7 S -0.712 6.712 8 N -0.645 5.645 9 C 0.170 3.830 10 C -0.047 4.047 11 C -0.484 4.484 12 H 0.047 0.953 13 C 0.044 3.956 14 N -0.931 5.931 15 Si 0.904 3.096 16 H -0.286 1.286 17 H -0.298 1.298 18 H -0.219 1.219 19 C -0.156 4.156 20 C -0.177 4.177 21 C -0.207 4.207 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.204 4.204 25 S 0.083 5.917 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.403 0.597 32 H 0.411 0.589 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.264 0.736 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 -14.542 9.443 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.115 3.885 4 H 0.135 0.865 5 N -0.310 5.310 6 C 0.213 3.787 7 S -0.588 6.588 8 N -0.270 5.270 9 C 0.046 3.954 10 C -0.049 4.049 11 C -0.521 4.521 12 H 0.065 0.935 13 C -0.156 4.156 14 N -0.569 5.569 15 Si 0.730 3.270 16 H -0.213 1.213 17 H -0.225 1.225 18 H -0.141 1.141 19 C -0.193 4.193 20 C -0.215 4.215 21 C -0.325 4.325 22 C -0.152 4.152 23 C -0.170 4.170 24 C -0.339 4.339 25 S 0.346 5.654 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.241 0.759 32 H 0.249 0.751 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.797 -14.574 8.820 18.341 hybrid contribution 1.047 1.348 0.264 1.727 sum 7.844 -13.226 9.084 17.860 Atomic orbital electron populations 1.22004 0.94751 1.00426 1.02603 1.21900 0.96613 0.93297 1.03539 1.19836 0.87324 0.94929 0.86461 0.86490 1.45075 1.12286 1.55619 1.17979 1.21788 0.86505 0.80328 0.90035 1.93169 1.57908 1.80432 1.27250 1.45035 1.23059 1.52485 1.06416 1.21202 0.82900 0.94973 0.96279 1.19506 0.91859 1.02152 0.91347 1.20288 1.16937 0.97835 1.17038 0.93501 1.25485 0.94989 0.98477 0.96644 1.70027 1.24698 1.15131 1.47075 0.86408 0.83913 0.77707 0.79004 1.21280 1.22541 1.14092 1.22902 1.03636 0.92544 1.00230 1.23067 0.95798 0.99329 1.03281 1.24534 0.97674 1.12034 0.98222 1.20418 0.94256 1.01384 0.99118 1.20458 0.95061 1.03008 0.98434 1.26005 1.02907 1.08706 0.96324 1.84371 0.97616 1.70188 1.13234 0.94765 0.92763 0.91657 0.91513 0.88681 0.75917 0.75075 0.93396 0.89750 0.92662 0.89644 0.88194 0.88724 0.89897 0.82781 0.81569 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.26 71.98 0.59 -2.99 16 2 C -0.11 -2.43 5.59 30.59 0.17 -2.26 16 3 C 0.22 5.33 2.64 44.24 0.12 5.45 16 4 H 0.12 3.32 6.59 -2.39 -0.02 3.31 16 5 N -0.68 -18.73 5.02 -333.14 -1.67 -20.41 16 6 C 0.58 19.83 6.35 179.05 1.14 20.96 16 7 S -0.71 -28.03 23.53 -56.49 -1.33 -29.36 16 8 N -0.64 -23.16 5.41 -350.18 -1.89 -25.05 16 9 C 0.17 6.68 4.78 86.38 0.41 7.09 16 10 C -0.05 -1.91 1.00 -52.93 -0.05 -1.96 16 11 C -0.48 -24.08 8.59 25.60 0.22 -23.86 16 12 H 0.05 2.58 8.06 -2.91 -0.02 2.56 16 13 C 0.04 2.37 5.45 84.65 0.46 2.83 16 14 N -0.93 -54.07 13.96 21.45 0.30 -53.77 16 15 Si 0.90 42.49 25.35 68.60 1.74 44.23 16 16 H -0.29 -14.04 6.95 99.48 0.69 -13.35 16 17 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 18 H -0.22 -9.23 5.59 99.48 0.56 -8.67 16 19 C -0.16 -5.30 9.92 30.62 0.30 -4.99 16 20 C -0.18 -6.43 7.70 30.62 0.24 -6.19 16 21 C -0.21 -4.36 5.44 24.59 0.13 -4.23 16 22 C -0.12 -2.23 10.04 21.21 0.21 -2.02 16 23 C -0.14 -2.17 10.18 21.21 0.22 -1.95 16 24 C -0.20 -3.19 11.23 66.72 0.75 -2.44 16 25 S 0.08 1.58 22.32 -56.49 -1.26 0.32 16 26 H 0.03 1.02 5.59 -2.39 -0.01 1.01 16 27 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 1.91 6.79 -2.39 -0.02 1.89 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.40 10.19 7.73 -92.71 -0.72 9.47 16 32 H 0.41 14.29 7.99 -92.71 -0.74 13.55 16 33 H 0.05 2.14 5.58 -2.39 -0.01 2.13 16 34 H 0.08 3.15 7.70 -2.38 -0.02 3.13 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 37 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 38 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -63.12 357.91 0.22 -62.91 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.58 Total: 37.70 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.91 Total: -16.57 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.27 Total: -99.23 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.74 Total: 44.23 kcal Atomic # 16 Polarization: -26.45 SS G_CDS: -2.59 Total: -29.04 kcal Total: -63.12 0.22 -62.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.762 kcal (2) G-P(sol) polarization free energy of solvation -63.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds