Wall clock time and date at job start Tue Mar 31 2020 13:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37757 * 119.82239 * 2 1 4 4 C 1.39758 * 119.92670 * 179.97438 * 3 2 1 5 5 C 1.47284 * 120.21739 * 179.97438 * 4 3 2 6 6 O 1.21526 * 120.00169 * 175.19923 * 5 4 3 7 7 O 1.34767 * 119.99827 * 355.19825 * 5 4 3 8 8 C 1.45204 * 116.99761 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47059 * 179.97438 * 8 7 5 10 10 O 1.42903 * 109.46958 * 65.00162 * 9 8 7 11 11 C 1.42898 * 113.99662 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46798 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00130 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99994 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00053 * 179.97438 * 14 12 11 16 16 Si 1.86810 * 119.99956 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47177 * 89.99744 * 16 14 12 18 18 H 1.48500 * 109.46868 * 209.99729 * 16 14 12 19 19 H 1.48500 * 109.47067 * 329.99662 * 16 14 12 20 20 C 1.40446 * 119.56623 * 0.02562 * 4 3 2 21 21 N 1.38838 * 120.17440 * 180.02562 * 20 4 3 22 22 C 1.38918 * 119.64168 * 0.02562 * 20 4 3 23 23 N 1.48025 * 119.96186 * 180.02562 * 22 20 4 24 24 O 1.21804 * 119.99721 * 186.01426 * 23 22 20 25 25 O 1.21796 * 120.00283 * 6.00676 * 23 22 20 26 26 C 1.37986 * 120.07049 * 0.02562 * 22 20 4 27 27 H 1.08998 * 109.46598 * 90.00409 * 1 2 3 28 28 H 1.08993 * 109.47162 * 209.99803 * 1 2 3 29 29 H 1.08997 * 109.47169 * 330.00332 * 1 2 3 30 30 H 1.08003 * 120.03769 * 0.27352 * 3 2 1 31 31 H 1.09002 * 109.47354 * 299.99784 * 8 7 5 32 32 H 1.09000 * 109.47130 * 60.00057 * 8 7 5 33 33 H 1.09003 * 109.47067 * 184.99763 * 9 8 7 34 34 H 1.09002 * 109.47274 * 305.00080 * 9 8 7 35 35 H 1.09003 * 109.47536 * 299.99567 * 11 10 9 36 36 H 1.08993 * 109.47630 * 59.99974 * 11 10 9 37 37 H 0.97008 * 119.99922 * 180.02562 * 15 14 12 38 38 H 0.97000 * 120.00330 * 34.66539 * 21 20 4 39 39 H 0.97005 * 119.99192 * 214.66369 * 21 20 4 40 40 H 1.07998 * 119.78154 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1921 1.1951 0.0000 4 6 3.5897 1.1977 0.0005 5 6 4.3287 2.4717 0.0000 6 8 5.5407 2.4713 0.0885 7 8 3.6607 3.6381 -0.0988 8 6 4.4537 4.8544 -0.0923 9 6 3.5284 6.0670 -0.2126 10 8 2.6990 6.1503 0.9482 11 6 1.7919 7.2543 0.9362 12 6 0.9715 7.2440 2.2003 13 1 1.1275 6.4718 2.9391 14 6 0.0223 8.2209 2.4142 15 7 -0.6940 8.2116 3.5171 16 14 -0.2472 9.5570 1.1367 17 1 -1.2812 9.1138 0.1675 18 1 -0.7001 10.8009 1.8095 19 1 1.0256 9.8183 0.4177 20 6 4.2849 -0.0226 0.0005 21 7 5.6733 -0.0348 0.0016 22 6 3.5760 -1.2173 -0.0005 23 7 4.3015 -2.5075 0.0000 24 8 3.6857 -3.5525 -0.1115 25 8 5.5142 -2.5242 0.1118 26 6 2.1962 -1.2024 -0.0021 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6499 2.1291 0.0045 31 1 5.0157 4.9168 0.8395 32 1 5.1460 4.8412 -0.9341 33 1 4.1272 6.9740 -0.2971 34 1 2.9031 5.9605 -1.0991 35 1 2.3542 8.1861 0.8753 36 1 1.1306 7.1720 0.0737 37 1 -1.3620 8.8987 3.6674 38 1 6.1640 0.6516 0.4801 39 1 6.1525 -0.7299 -0.4762 40 1 1.6497 -2.1339 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815204876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:51 Heat of formation + Delta-G solvation = -103.529883 kcal Electronic energy + Delta-G solvation = -26705.912319 eV Core-core repulsion = 22489.643576 eV Total energy + Delta-G solvation = -4216.268743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.47581 -40.96603 -39.48766 -37.43414 -36.98097 -36.42347 -35.31313 -32.83849 -32.58005 -31.66226 -30.32254 -27.73206 -27.20746 -26.18345 -24.98503 -22.79158 -22.12539 -21.93562 -21.03745 -19.18995 -18.88076 -17.94969 -17.74403 -17.49878 -17.14466 -17.08867 -16.72842 -16.48563 -15.59776 -15.35317 -14.87919 -14.62466 -14.55985 -14.23575 -13.72072 -13.35255 -12.97074 -12.90776 -12.71438 -12.59641 -12.51616 -12.30428 -11.86392 -11.77144 -11.42003 -11.36497 -11.30000 -11.02161 -10.88129 -10.76370 -10.68231 -10.45117 -10.02766 -9.95747 -9.30338 -9.01890 -8.60596 -8.41964 -6.20267 -4.20268 -0.42155 0.31773 1.02966 1.13587 2.11589 2.42209 3.02893 3.17221 3.23127 3.24697 3.25207 3.97375 4.11353 4.26616 4.31517 4.35404 4.49451 4.57320 4.84720 4.98047 5.08138 5.10767 5.22572 5.24136 5.32586 5.38036 5.55169 5.63365 5.65875 5.78041 5.85329 5.93157 6.17422 6.26096 6.45149 6.80156 6.86458 7.30867 7.45033 7.47915 7.52826 7.84282 8.53377 8.90373 9.38106 10.92577 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.002619 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.616952 B =10688.254402 C =11770.289054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.144 4.144 3 C 0.037 3.963 4 C -0.196 4.196 5 C 0.523 3.477 6 O -0.516 6.516 7 O -0.333 6.333 8 C 0.076 3.924 9 C 0.057 3.943 10 O -0.376 6.376 11 C 0.169 3.831 12 C -0.522 4.522 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.893 5.893 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.329 3.671 21 N -0.834 5.834 22 C -0.127 4.127 23 N 0.050 4.950 24 O -0.168 6.168 25 O -0.182 6.182 26 C 0.015 3.985 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.004 0.996 36 H 0.001 0.999 37 H 0.267 0.733 38 H 0.421 0.579 39 H 0.412 0.588 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 -16.652 -11.297 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C 0.018 3.982 4 C -0.203 4.203 5 C 0.369 3.631 6 O -0.407 6.407 7 O -0.248 6.248 8 C 0.003 3.997 9 C -0.021 4.021 10 O -0.295 6.295 11 C 0.094 3.906 12 C -0.559 4.559 13 H 0.101 0.899 14 C -0.129 4.129 15 N -0.531 5.531 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.191 1.191 20 C 0.213 3.787 21 N -0.383 5.383 22 C -0.218 4.218 23 N 0.563 4.437 24 O -0.382 6.382 25 O -0.390 6.390 26 C -0.004 4.004 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.180 0.820 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.019 0.981 37 H 0.077 0.923 38 H 0.259 0.741 39 H 0.248 0.752 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.122 -16.026 -10.998 20.701 hybrid contribution 0.471 0.717 -0.790 1.166 sum 7.593 -15.310 -11.788 20.761 Atomic orbital electron populations 1.20780 0.88589 1.04122 1.03207 1.19705 0.97697 0.90867 1.06437 1.21845 0.91962 0.99913 0.84434 1.18709 0.93732 0.89153 1.18696 1.20468 0.85537 0.84348 0.72782 1.90671 1.14873 1.87762 1.47401 1.86621 1.41088 1.14355 1.82775 1.23266 0.93179 0.80022 1.03236 1.22415 0.93873 0.94457 0.91364 1.87975 1.52195 1.51224 1.38117 1.20642 0.87785 0.84230 0.97985 1.20857 1.18209 1.13617 1.03254 0.89929 1.24769 0.95203 0.97383 0.95550 1.69871 1.23234 1.34798 1.25244 0.86854 0.79078 0.81887 0.81934 1.19858 1.20716 1.19128 1.17104 0.85664 0.89493 0.86487 1.43279 1.01980 1.36268 1.56798 1.20603 0.92717 0.82005 1.26426 1.43274 1.00898 1.02442 0.97136 1.94535 1.69151 1.20787 1.53715 1.94408 0.96330 1.93732 1.54482 1.20999 0.90258 1.00521 0.88644 0.90553 0.90911 0.90099 0.81954 0.90004 0.90014 0.91561 0.92923 0.97810 0.98138 0.92260 0.74065 0.75190 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.00 36.01 0.36 -0.32 16 2 C -0.14 -1.18 5.87 -104.67 -0.61 -1.80 16 3 C 0.04 0.36 9.25 -39.19 -0.36 0.00 16 4 C -0.20 -2.23 5.89 -104.82 -0.62 -2.84 16 5 C 0.52 6.91 7.88 34.41 0.27 7.18 16 6 O -0.52 -7.19 13.68 -19.29 -0.26 -7.45 16 7 O -0.33 -4.75 9.45 -43.46 -0.41 -5.16 16 8 C 0.08 1.03 5.85 37.16 0.22 1.25 16 9 C 0.06 0.88 6.33 37.16 0.24 1.11 16 10 O -0.38 -8.15 10.30 -38.80 -0.40 -8.55 16 11 C 0.17 4.04 4.76 36.01 0.17 4.21 16 12 C -0.52 -14.91 9.99 -34.44 -0.34 -15.25 16 13 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 16 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 20 C 0.33 3.63 6.74 -83.61 -0.56 3.07 16 21 N -0.83 -8.63 7.52 32.55 0.24 -8.39 16 22 C -0.13 -1.36 6.85 -79.78 -0.55 -1.91 16 23 N 0.05 0.60 4.45 34.04 0.15 0.76 16 24 O -0.17 -2.10 18.45 -29.46 -0.54 -2.65 16 25 O -0.18 -2.27 16.04 -29.46 -0.47 -2.74 16 26 C 0.02 0.13 9.19 -39.54 -0.36 -0.23 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.16 1.54 7.62 -52.48 -0.40 1.14 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 36 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.42 4.47 6.43 -40.82 -0.26 4.21 16 39 H 0.41 3.89 6.64 -40.82 -0.27 3.62 16 40 H 0.16 1.05 7.60 -52.49 -0.40 0.65 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -32.65 352.43 -7.17 -39.82 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.64 Total: 2.76 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.25 Total: -3.56 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 1.17 Total: -33.61 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -2.09 Total: -26.55 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.65 -7.17 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815204876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.710 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds