Wall clock time and date at job start Tue Mar 31 2020 13:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37757 * 119.82239 * 2 1 4 4 C 1.39758 * 119.92670 * 179.97438 * 3 2 1 5 5 C 1.47284 * 120.21739 * 179.97438 * 4 3 2 6 6 O 1.21526 * 120.00169 * 175.19923 * 5 4 3 7 7 O 1.34767 * 119.99827 * 355.19825 * 5 4 3 8 8 C 1.45204 * 116.99761 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47059 * 179.97438 * 8 7 5 10 10 O 1.42903 * 109.46958 * 65.00162 * 9 8 7 11 11 C 1.42898 * 113.99662 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46798 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00130 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99994 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00053 * 179.97438 * 14 12 11 16 16 Si 1.86810 * 119.99956 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47177 * 89.99744 * 16 14 12 18 18 H 1.48500 * 109.46868 * 209.99729 * 16 14 12 19 19 H 1.48500 * 109.47067 * 329.99662 * 16 14 12 20 20 C 1.40446 * 119.56623 * 0.02562 * 4 3 2 21 21 N 1.38838 * 120.17440 * 180.02562 * 20 4 3 22 22 C 1.38918 * 119.64168 * 0.02562 * 20 4 3 23 23 N 1.48025 * 119.96186 * 180.02562 * 22 20 4 24 24 O 1.21804 * 119.99721 * 186.01426 * 23 22 20 25 25 O 1.21796 * 120.00283 * 6.00676 * 23 22 20 26 26 C 1.37986 * 120.07049 * 0.02562 * 22 20 4 27 27 H 1.08998 * 109.46598 * 90.00409 * 1 2 3 28 28 H 1.08993 * 109.47162 * 209.99803 * 1 2 3 29 29 H 1.08997 * 109.47169 * 330.00332 * 1 2 3 30 30 H 1.08003 * 120.03769 * 0.27352 * 3 2 1 31 31 H 1.09002 * 109.47354 * 299.99784 * 8 7 5 32 32 H 1.09000 * 109.47130 * 60.00057 * 8 7 5 33 33 H 1.09003 * 109.47067 * 184.99763 * 9 8 7 34 34 H 1.09002 * 109.47274 * 305.00080 * 9 8 7 35 35 H 1.09003 * 109.47536 * 299.99567 * 11 10 9 36 36 H 1.08993 * 109.47630 * 59.99974 * 11 10 9 37 37 H 0.97008 * 119.99922 * 180.02562 * 15 14 12 38 38 H 0.97000 * 120.00330 * 34.66539 * 21 20 4 39 39 H 0.97005 * 119.99192 * 214.66369 * 21 20 4 40 40 H 1.07998 * 119.78154 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1921 1.1951 0.0000 4 6 3.5897 1.1977 0.0005 5 6 4.3287 2.4717 0.0000 6 8 5.5407 2.4713 0.0885 7 8 3.6607 3.6381 -0.0988 8 6 4.4537 4.8544 -0.0923 9 6 3.5284 6.0670 -0.2126 10 8 2.6990 6.1503 0.9482 11 6 1.7919 7.2543 0.9362 12 6 0.9715 7.2440 2.2003 13 1 1.1275 6.4718 2.9391 14 6 0.0223 8.2209 2.4142 15 7 -0.6940 8.2116 3.5171 16 14 -0.2472 9.5570 1.1367 17 1 -1.2812 9.1138 0.1675 18 1 -0.7001 10.8009 1.8095 19 1 1.0256 9.8183 0.4177 20 6 4.2849 -0.0226 0.0005 21 7 5.6733 -0.0348 0.0016 22 6 3.5760 -1.2173 -0.0005 23 7 4.3015 -2.5075 0.0000 24 8 3.6857 -3.5525 -0.1115 25 8 5.5142 -2.5242 0.1118 26 6 2.1962 -1.2024 -0.0021 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6499 2.1291 0.0045 31 1 5.0157 4.9168 0.8395 32 1 5.1460 4.8412 -0.9341 33 1 4.1272 6.9740 -0.2971 34 1 2.9031 5.9605 -1.0991 35 1 2.3542 8.1861 0.8753 36 1 1.1306 7.1720 0.0737 37 1 -1.3620 8.8987 3.6674 38 1 6.1640 0.6516 0.4801 39 1 6.1525 -0.7299 -0.4762 40 1 1.6497 -2.1339 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815204876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:50 Heat of formation + Delta-G solvation = -124.130210 kcal Electronic energy + Delta-G solvation = -26706.805616 eV Core-core repulsion = 22489.643576 eV Total energy + Delta-G solvation = -4217.162040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.37764 -41.92807 -40.38734 -38.80962 -37.97215 -37.56761 -36.15693 -34.88361 -33.49155 -32.44212 -31.64210 -29.57295 -27.99324 -26.94320 -25.92952 -24.05527 -23.74601 -23.05484 -21.95822 -20.08141 -19.78802 -19.10084 -18.84041 -18.64785 -18.33855 -18.02550 -17.93341 -17.58563 -17.05420 -16.54674 -16.29281 -16.03646 -15.33761 -15.08364 -14.96082 -14.63883 -14.33753 -14.05062 -13.69682 -13.46708 -13.45237 -13.31721 -13.00447 -12.91270 -12.71975 -12.63262 -12.34933 -12.32072 -12.26913 -11.88973 -11.81581 -11.75820 -11.35501 -11.30868 -10.92348 -10.85302 -10.40191 -9.20387 -8.35957 -6.44306 -1.28133 -0.53335 0.18238 0.26514 1.18950 1.35833 1.38766 1.44643 1.49236 2.19502 2.30727 2.41860 2.94635 2.97233 3.13705 3.34581 3.51140 3.76322 3.79443 3.90571 4.04400 4.11593 4.34449 4.38481 4.50187 4.58109 4.61611 4.65922 4.70753 4.89453 4.96273 5.01191 5.14665 5.23383 5.26199 5.44059 5.45797 5.91738 5.96803 6.43220 6.51524 6.54727 6.59791 6.71571 7.20084 8.81062 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.002619 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.616952 B =10688.254402 C =11770.289054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 C 0.038 3.962 4 C -0.210 4.210 5 C 0.520 3.480 6 O -0.529 6.529 7 O -0.346 6.346 8 C 0.076 3.924 9 C 0.049 3.951 10 O -0.406 6.406 11 C 0.179 3.821 12 C -0.546 4.546 13 H 0.029 0.971 14 C 0.012 3.988 15 N -0.943 5.943 16 Si 0.955 3.045 17 H -0.258 1.258 18 H -0.278 1.278 19 H -0.242 1.242 20 C 0.323 3.677 21 N -0.832 5.832 22 C -0.136 4.136 23 N 0.051 4.949 24 O -0.175 6.175 25 O -0.198 6.198 26 C 0.026 3.974 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.273 0.727 38 H 0.419 0.581 39 H 0.416 0.584 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -16.093 -13.632 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 C 0.019 3.981 4 C -0.217 4.217 5 C 0.368 3.632 6 O -0.420 6.420 7 O -0.262 6.262 8 C 0.003 3.997 9 C -0.027 4.027 10 O -0.326 6.326 11 C 0.103 3.897 12 C -0.584 4.584 13 H 0.047 0.953 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.776 3.224 17 H -0.182 1.182 18 H -0.203 1.203 19 H -0.165 1.165 20 C 0.206 3.794 21 N -0.381 5.381 22 C -0.226 4.226 23 N 0.560 4.440 24 O -0.388 6.388 25 O -0.403 6.403 26 C 0.007 3.993 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.181 0.819 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.252 0.748 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.640 -15.504 -13.346 21.507 hybrid contribution 0.631 0.447 0.004 0.773 sum 7.270 -15.057 -13.342 21.391 Atomic orbital electron populations 1.20868 0.86751 1.04742 1.04350 1.19916 0.98778 0.89981 1.04980 1.21954 0.91403 1.00715 0.84048 1.18658 0.94304 0.88379 1.20324 1.20747 0.85562 0.84542 0.72385 1.90657 1.15345 1.87907 1.48126 1.86608 1.41690 1.14871 1.83021 1.23320 0.92946 0.79317 1.04117 1.22770 0.93868 0.96406 0.89680 1.87919 1.52768 1.50470 1.41399 1.20357 0.88097 0.85484 0.95755 1.21164 1.19935 1.12774 1.04502 0.95281 1.25854 0.94349 1.00239 0.98120 1.70038 1.24139 1.36220 1.27855 0.85611 0.80316 0.77662 0.78767 1.18234 1.20292 1.16497 1.17181 0.85874 0.89617 0.86731 1.43263 1.01937 1.36225 1.56661 1.20732 0.93393 0.81129 1.27394 1.43440 1.00875 1.02803 0.96864 1.94518 1.69069 1.21321 1.53893 1.94404 0.96754 1.93920 1.55191 1.21304 0.89431 1.01628 0.86956 0.89069 0.89263 0.90552 0.81925 0.91001 0.86873 0.89107 0.91277 0.96579 0.96529 0.91838 0.74303 0.74814 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.00 71.24 0.71 -0.39 16 2 C -0.13 -1.95 5.87 -19.89 -0.12 -2.07 16 3 C 0.04 0.70 9.25 22.52 0.21 0.91 16 4 C -0.21 -4.70 5.89 -19.99 -0.12 -4.81 16 5 C 0.52 13.66 7.88 70.20 0.55 14.21 16 6 O -0.53 -14.66 13.68 19.75 0.27 -14.39 16 7 O -0.35 -9.69 9.45 -54.12 -0.51 -10.20 16 8 C 0.08 1.95 5.85 71.98 0.42 2.37 16 9 C 0.05 1.42 6.33 71.98 0.46 1.88 16 10 O -0.41 -17.39 10.30 -145.57 -1.50 -18.89 16 11 C 0.18 8.33 4.76 71.24 0.34 8.67 16 12 C -0.55 -31.93 9.99 25.60 0.26 -31.68 16 13 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 14 C 0.01 0.70 5.47 84.65 0.46 1.17 16 15 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 16 Si 0.96 41.16 27.47 68.60 1.88 43.04 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 18 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 20 C 0.32 7.02 6.74 38.73 0.26 7.28 16 21 N -0.83 -17.30 7.52 -50.93 -0.38 -17.68 16 22 C -0.14 -2.79 6.85 36.48 0.25 -2.54 16 23 N 0.05 1.19 4.45 -46.21 -0.21 0.99 16 24 O -0.18 -4.21 18.45 18.88 0.35 -3.86 16 25 O -0.20 -4.93 16.04 18.89 0.30 -4.62 16 26 C 0.03 0.40 9.19 22.29 0.20 0.60 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.16 3.02 7.62 -2.91 -0.02 3.00 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 36 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 37 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 38 H 0.42 9.05 6.43 -92.71 -0.60 8.45 16 39 H 0.42 7.92 6.64 -92.70 -0.62 7.31 16 40 H 0.18 1.91 7.60 -2.91 -0.02 1.89 16 Total: -1.00 -72.52 352.43 4.24 -68.28 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.16 Total: 19.23 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 3.89 Total: -4.39 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -0.29 Total: -74.21 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -1.09 Total: -51.96 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.04 kcal Total: -72.52 4.24 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815204876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.847 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds