Wall clock time and date at job start Tue Mar 31 2020 13:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99777 * 2 1 4 4 H 1.48497 * 109.47114 * 269.99568 * 3 2 1 5 5 H 1.48502 * 109.46989 * 29.99948 * 3 2 1 6 6 H 1.48505 * 109.46922 * 149.99881 * 3 2 1 7 7 C 1.37876 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99937 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00122 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47224 * 175.21457 * 9 7 2 11 11 C 1.46898 * 111.00295 * 75.49870 * 10 9 7 12 12 N 1.46502 * 109.47118 * 205.00270 * 11 10 9 13 13 C 1.46766 * 124.34813 * 269.72295 * 12 11 10 14 14 C 1.54664 * 105.38126 * 162.85662 * 13 12 11 15 15 H 1.09009 * 111.18982 * 267.59609 * 14 13 12 16 16 C 1.50698 * 110.85435 * 143.79545 * 14 13 12 17 17 O 1.20825 * 119.99821 * 6.32767 * 16 14 13 18 18 O 1.34227 * 119.99810 * 186.33143 * 16 14 13 19 19 C 1.54626 * 101.68408 * 25.76752 * 14 13 12 20 20 C 1.34412 * 124.34845 * 90.02718 * 12 11 10 21 21 O 1.21275 * 124.94691 * 0.42739 * 20 12 11 22 22 C 1.46905 * 110.99959 * 199.45677 * 10 9 7 23 23 C 1.52999 * 109.47273 * 77.30872 * 22 10 9 24 24 F 1.39901 * 109.47375 * 54.13471 * 23 22 10 25 25 F 1.39898 * 109.47471 * 174.13573 * 23 22 10 26 26 F 1.39899 * 109.46932 * 294.13502 * 23 22 10 27 27 H 0.97002 * 120.00351 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47472 * 295.20925 * 9 7 2 29 29 H 1.08994 * 109.47813 * 55.21046 * 9 7 2 30 30 H 1.08999 * 109.47246 * 325.00209 * 11 10 9 31 31 H 1.09001 * 109.47002 * 85.00528 * 11 10 9 32 32 H 1.08994 * 110.25141 * 281.98810 * 13 12 11 33 33 H 1.09005 * 110.24559 * 43.98905 * 13 12 11 34 34 H 0.96702 * 116.99655 * 179.97438 * 18 16 14 35 35 H 1.08997 * 110.48505 * 216.31258 * 19 14 13 36 36 H 1.08995 * 110.48467 * 93.66351 * 19 14 13 37 37 H 1.09000 * 109.47065 * 197.30557 * 22 10 9 38 38 H 1.08994 * 109.47067 * 317.30143 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0012 -2.5740 0.1172 11 6 3.8535 -3.2938 -1.1548 12 7 3.7667 -4.7329 -0.8944 13 6 4.9224 -5.6362 -0.8426 14 6 4.4163 -6.9091 -0.1245 15 1 4.5964 -6.8537 0.9492 16 6 5.0495 -8.1440 -0.7118 17 8 5.9205 -8.0394 -1.5426 18 8 4.6458 -9.3601 -0.3120 19 6 2.9022 -6.8626 -0.4347 20 6 2.6181 -5.3966 -0.6780 21 8 1.5146 -4.8936 -0.6780 22 6 5.3957 -2.6008 0.5784 23 6 5.4397 -2.3381 2.0850 24 9 4.6015 -3.2458 2.7414 25 9 6.7505 -2.4954 2.5478 26 9 5.0073 -1.0330 2.3436 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.7564 -0.9287 29 1 3.8746 -0.6074 0.8450 30 1 2.9458 -2.9603 -1.6578 31 1 4.7161 -3.0908 -1.7895 32 1 5.2584 -5.8771 -1.8511 33 1 5.7324 -5.1801 -0.2733 34 1 5.0812 -10.1224 -0.7174 35 1 2.3270 -7.2264 0.4166 36 1 2.6773 -7.4477 -1.3264 37 1 5.8295 -3.5782 0.3672 38 1 5.9652 -1.8305 0.0584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:43 Heat of formation + Delta-G solvation = -251.277643 kcal Electronic energy + Delta-G solvation = -29182.166328 eV Core-core repulsion = 24417.634021 eV Total energy + Delta-G solvation = -4764.532307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.69738 -47.28398 -47.08076 -41.11185 -39.71963 -37.11774 -36.61297 -35.87979 -32.69390 -32.19561 -29.59214 -27.88904 -27.46162 -25.15434 -23.72191 -22.72903 -21.07431 -20.80830 -19.38820 -18.45404 -18.13465 -18.05854 -17.47368 -17.18807 -16.80040 -16.66138 -15.88874 -15.48142 -15.24954 -14.65464 -14.31819 -14.08886 -13.91013 -13.87232 -13.78738 -13.63306 -13.49205 -13.30723 -13.29963 -13.25944 -12.97923 -12.77700 -12.37221 -12.04746 -11.90010 -11.71037 -11.55313 -11.41996 -11.21868 -10.91957 -10.75073 -10.50142 -9.86296 -9.54445 -9.31953 -8.67164 -8.55865 -7.89472 -6.00112 -3.99022 1.79351 2.51443 2.80436 3.09757 3.19739 3.28222 3.37220 3.38154 3.94329 4.04746 4.19137 4.24210 4.34832 4.43394 4.62015 4.72806 4.90317 5.01309 5.04386 5.19682 5.28396 5.34368 5.38752 5.48674 5.59457 5.61610 6.00037 6.10606 6.48504 6.52255 6.73654 7.21139 7.43053 7.49770 7.54462 7.72905 8.45389 8.61512 9.17714 9.58570 11.12644 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.004666 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.592096 B = 5999.923247 C = 7298.472273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.866 3.134 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.091 0.909 9 C 0.147 3.853 10 N -0.532 5.532 11 C 0.302 3.698 12 N -0.614 5.614 13 C 0.115 3.885 14 C -0.098 4.098 15 H 0.132 0.868 16 C 0.496 3.504 17 O -0.511 6.511 18 O -0.510 6.510 19 C -0.140 4.140 20 C 0.521 3.479 21 O -0.492 6.492 22 C 0.003 3.997 23 C 0.456 3.544 24 F -0.172 7.172 25 F -0.196 7.196 26 F -0.175 7.175 27 H 0.263 0.737 28 H -0.008 1.008 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.558 -15.009 -0.780 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.693 3.307 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.109 0.891 9 C 0.022 3.978 10 N -0.259 5.259 11 C 0.093 3.907 12 N -0.351 5.351 13 C -0.009 4.009 14 C -0.117 4.117 15 H 0.150 0.850 16 C 0.337 3.663 17 O -0.398 6.398 18 O -0.322 6.322 19 C -0.181 4.181 20 C 0.307 3.693 21 O -0.363 6.363 22 C -0.127 4.127 23 C 0.401 3.599 24 F -0.153 7.153 25 F -0.177 7.177 26 F -0.156 7.156 27 H 0.073 0.927 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.517 -14.371 -0.480 19.735 hybrid contribution 1.382 0.840 -0.399 1.666 sum 14.899 -13.531 -0.879 20.146 Atomic orbital electron populations 1.69899 1.06074 1.26667 1.50512 1.24849 0.94658 0.98483 0.94895 0.87012 0.80663 0.84590 0.78422 1.20332 1.21053 1.18941 1.21019 0.87932 0.95420 1.50501 0.89075 1.20662 0.98448 0.82137 0.96600 1.61650 1.13120 1.19989 1.31104 1.21843 1.03256 0.76666 0.88985 1.48444 1.06706 1.07975 1.71942 1.22037 0.89450 0.87857 1.01573 1.21932 0.96746 0.89840 1.03230 0.84972 1.22931 0.79756 0.84684 0.78904 1.90745 1.30296 1.87292 1.31504 1.84540 1.64530 1.16690 1.66432 1.22339 0.93439 0.96793 1.05488 1.20507 0.84516 0.88036 0.76280 1.90872 1.23740 1.73040 1.48691 1.23300 0.95213 1.04409 0.89826 1.20569 0.72613 0.74566 0.92117 1.93188 1.71706 1.67050 1.83376 1.93135 1.38135 1.95520 1.90959 1.93152 1.89399 1.37887 1.95189 0.92672 0.99000 0.92839 0.86132 0.92775 0.89328 0.89986 0.72856 0.86695 0.87694 0.87894 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.21 27.57 -169.99 -4.69 16.53 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.22 6.41 56.52 0.36 -5.85 16 7 C -0.51 -14.40 9.06 -34.44 -0.31 -14.71 16 8 H 0.09 2.93 8.05 -52.48 -0.42 2.51 16 9 C 0.15 3.34 3.58 -4.98 -0.02 3.32 16 10 N -0.53 -10.04 4.27 -239.98 -1.02 -11.07 16 11 C 0.30 5.02 5.49 -63.32 -0.35 4.67 16 12 N -0.61 -8.85 3.13 -175.79 -0.55 -9.40 16 13 C 0.11 1.17 6.43 -3.02 -0.02 1.15 16 14 C -0.10 -0.86 3.67 -90.04 -0.33 -1.19 16 15 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 16 C 0.50 4.17 7.55 36.00 0.27 4.45 16 17 O -0.51 -5.63 16.33 -18.75 -0.31 -5.94 16 18 O -0.51 -3.13 13.41 -39.25 -0.53 -3.65 16 19 C -0.14 -1.48 6.40 -26.74 -0.17 -1.65 16 20 C 0.52 8.48 8.02 -10.86 -0.09 8.40 16 21 O -0.49 -10.93 17.59 5.56 0.10 -10.83 16 22 C 0.00 0.05 4.96 -3.82 -0.02 0.03 16 23 C 0.46 7.43 3.28 37.16 0.12 7.55 16 24 F -0.17 -3.08 17.13 2.25 0.04 -3.04 16 25 F -0.20 -2.80 17.32 2.25 0.04 -2.76 16 26 F -0.17 -3.34 14.63 2.25 0.03 -3.31 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H -0.01 -0.17 7.67 -51.93 -0.40 -0.56 16 29 H 0.05 1.26 3.94 -51.93 -0.20 1.06 16 30 H 0.12 2.43 7.01 -51.93 -0.36 2.07 16 31 H 0.05 0.72 7.92 -51.93 -0.41 0.30 16 32 H 0.09 0.88 7.08 -51.93 -0.37 0.51 16 33 H 0.08 0.73 5.82 -51.93 -0.30 0.43 16 34 H 0.41 0.81 9.10 45.56 0.41 1.22 16 35 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 37 H 0.10 1.18 5.26 -51.93 -0.27 0.90 16 38 H 0.08 0.98 7.98 -51.93 -0.41 0.57 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -36.65 332.16 -5.29 -41.94 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.17 Total: -0.54 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.01 Total: 14.03 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.80 Total: -47.44 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.73 Total: -20.42 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 0.11 Total: -9.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.69 Total: 16.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.65 -5.29 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.340 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds