Wall clock time and date at job start Tue Mar 31 2020 13:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99777 * 2 1 4 4 H 1.48497 * 109.47114 * 269.99568 * 3 2 1 5 5 H 1.48502 * 109.46989 * 29.99948 * 3 2 1 6 6 H 1.48505 * 109.46922 * 149.99881 * 3 2 1 7 7 C 1.37876 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99937 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00122 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47224 * 175.21457 * 9 7 2 11 11 C 1.46898 * 111.00295 * 75.49870 * 10 9 7 12 12 N 1.46502 * 109.47118 * 205.00270 * 11 10 9 13 13 C 1.46766 * 124.34813 * 269.72295 * 12 11 10 14 14 C 1.54664 * 105.38126 * 162.85662 * 13 12 11 15 15 H 1.09009 * 111.18982 * 267.59609 * 14 13 12 16 16 C 1.50698 * 110.85435 * 143.79545 * 14 13 12 17 17 O 1.20825 * 119.99821 * 6.32767 * 16 14 13 18 18 O 1.34227 * 119.99810 * 186.33143 * 16 14 13 19 19 C 1.54626 * 101.68408 * 25.76752 * 14 13 12 20 20 C 1.34412 * 124.34845 * 90.02718 * 12 11 10 21 21 O 1.21275 * 124.94691 * 0.42739 * 20 12 11 22 22 C 1.46905 * 110.99959 * 199.45677 * 10 9 7 23 23 C 1.52999 * 109.47273 * 77.30872 * 22 10 9 24 24 F 1.39901 * 109.47375 * 54.13471 * 23 22 10 25 25 F 1.39898 * 109.47471 * 174.13573 * 23 22 10 26 26 F 1.39899 * 109.46932 * 294.13502 * 23 22 10 27 27 H 0.97002 * 120.00351 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47472 * 295.20925 * 9 7 2 29 29 H 1.08994 * 109.47813 * 55.21046 * 9 7 2 30 30 H 1.08999 * 109.47246 * 325.00209 * 11 10 9 31 31 H 1.09001 * 109.47002 * 85.00528 * 11 10 9 32 32 H 1.08994 * 110.25141 * 281.98810 * 13 12 11 33 33 H 1.09005 * 110.24559 * 43.98905 * 13 12 11 34 34 H 0.96702 * 116.99655 * 179.97438 * 18 16 14 35 35 H 1.08997 * 110.48505 * 216.31258 * 19 14 13 36 36 H 1.08995 * 110.48467 * 93.66351 * 19 14 13 37 37 H 1.09000 * 109.47065 * 197.30557 * 22 10 9 38 38 H 1.08994 * 109.47067 * 317.30143 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0012 -2.5740 0.1172 11 6 3.8535 -3.2938 -1.1548 12 7 3.7667 -4.7329 -0.8944 13 6 4.9224 -5.6362 -0.8426 14 6 4.4163 -6.9091 -0.1245 15 1 4.5964 -6.8537 0.9492 16 6 5.0495 -8.1440 -0.7118 17 8 5.9205 -8.0394 -1.5426 18 8 4.6458 -9.3601 -0.3120 19 6 2.9022 -6.8626 -0.4347 20 6 2.6181 -5.3966 -0.6780 21 8 1.5146 -4.8936 -0.6780 22 6 5.3957 -2.6008 0.5784 23 6 5.4397 -2.3381 2.0850 24 9 4.6015 -3.2458 2.7414 25 9 6.7505 -2.4954 2.5478 26 9 5.0073 -1.0330 2.3436 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.7564 -0.9287 29 1 3.8746 -0.6074 0.8450 30 1 2.9458 -2.9603 -1.6578 31 1 4.7161 -3.0908 -1.7895 32 1 5.2584 -5.8771 -1.8511 33 1 5.7324 -5.1801 -0.2733 34 1 5.0812 -10.1224 -0.7174 35 1 2.3270 -7.2264 0.4166 36 1 2.6773 -7.4477 -1.3264 37 1 5.8295 -3.5782 0.3672 38 1 5.9652 -1.8305 0.0584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:42 Heat of formation + Delta-G solvation = -280.799187 kcal Electronic energy + Delta-G solvation = -29183.446478 eV Core-core repulsion = 24417.634021 eV Total energy + Delta-G solvation = -4765.812457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.98727 -48.55959 -48.42021 -41.97611 -40.68074 -38.57359 -37.42396 -36.90754 -34.70787 -33.37032 -31.15566 -29.09469 -28.78946 -26.38807 -24.83536 -24.18034 -22.53152 -21.71775 -20.56565 -19.47326 -19.41839 -19.01682 -18.98608 -18.33540 -18.12552 -17.91271 -16.90201 -16.67778 -16.37196 -16.21065 -15.64826 -15.53171 -15.37394 -15.14779 -15.01559 -14.87447 -14.67586 -14.61137 -14.50918 -14.42001 -14.11337 -14.02878 -13.87444 -13.50934 -13.11251 -12.73269 -12.57179 -12.53281 -12.48181 -12.42579 -12.18886 -11.77501 -11.64734 -11.45111 -10.88085 -10.74878 -9.91537 -9.33219 -8.22658 -6.26822 1.14991 1.34272 1.38810 1.47965 1.53951 1.80865 1.86004 2.17386 2.36515 2.73956 2.97847 3.10966 3.11859 3.13795 3.33442 3.61978 3.85788 3.88734 4.00810 4.05864 4.24490 4.40398 4.46127 4.57376 4.62484 4.77115 4.80995 4.86604 4.89042 5.43526 5.56092 5.62366 5.80030 5.99884 6.19688 6.52071 6.84615 7.00947 7.22522 7.34967 8.95026 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.004666 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.592096 B = 5999.923247 C = 7298.472273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.944 3.056 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.511 4.511 8 H 0.031 0.969 9 C 0.158 3.842 10 N -0.557 5.557 11 C 0.304 3.696 12 N -0.611 5.611 13 C 0.112 3.888 14 C -0.088 4.088 15 H 0.152 0.848 16 C 0.510 3.490 17 O -0.536 6.536 18 O -0.505 6.505 19 C -0.126 4.126 20 C 0.505 3.495 21 O -0.570 6.570 22 C 0.007 3.993 23 C 0.452 3.548 24 F -0.186 7.186 25 F -0.180 7.180 26 F -0.194 7.194 27 H 0.264 0.736 28 H 0.010 0.990 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.433 0.567 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.606 -15.826 -0.873 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.032 3.968 10 N -0.284 5.284 11 C 0.094 3.906 12 N -0.346 5.346 13 C -0.010 4.010 14 C -0.108 4.108 15 H 0.169 0.831 16 C 0.352 3.648 17 O -0.426 6.426 18 O -0.319 6.319 19 C -0.166 4.166 20 C 0.294 3.706 21 O -0.448 6.448 22 C -0.122 4.122 23 C 0.398 3.602 24 F -0.168 7.168 25 F -0.162 7.162 26 F -0.176 7.176 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.295 0.705 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.648 -15.265 -0.578 23.341 hybrid contribution 0.123 0.905 -0.354 0.980 sum 17.771 -14.360 -0.932 22.867 Atomic orbital electron populations 1.70104 1.08492 1.27839 1.52898 1.25885 0.95515 1.03205 0.94571 0.85769 0.79665 0.78467 0.79373 1.18578 1.21355 1.16543 1.21234 0.91227 0.93101 1.49348 0.95085 1.20338 0.94477 0.84862 0.97132 1.61305 1.16510 1.17903 1.32680 1.21667 1.02725 0.77719 0.88520 1.48530 1.07897 1.07591 1.70549 1.22289 0.88105 0.87656 1.02927 1.21890 0.94781 0.89802 1.04310 0.83066 1.22588 0.79057 0.85055 0.78090 1.90753 1.31571 1.87700 1.32598 1.84492 1.64399 1.16729 1.66239 1.22252 0.95234 0.92441 1.06709 1.21549 0.83819 0.90480 0.74795 1.90835 1.26733 1.75088 1.52151 1.23468 0.92774 1.07640 0.88351 1.20882 0.72828 0.73499 0.93022 1.93163 1.72370 1.67415 1.83827 1.93164 1.36786 1.95343 1.90913 1.93107 1.89753 1.39351 1.95376 0.92694 0.97219 0.92793 0.91169 0.88233 0.88316 0.87650 0.70487 0.85700 0.85982 0.84179 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.39 13.96 21.45 0.30 -62.09 16 2 C 0.00 0.29 5.47 84.66 0.46 0.75 16 3 Si 0.94 44.20 27.57 68.60 1.89 46.09 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.24 -10.36 6.41 99.48 0.64 -9.72 16 7 C -0.51 -30.18 9.06 25.60 0.23 -29.95 16 8 H 0.03 2.16 8.05 -2.91 -0.02 2.14 16 9 C 0.16 7.13 3.58 85.55 0.31 7.44 16 10 N -0.56 -20.48 4.27 -913.18 -3.90 -24.38 16 11 C 0.30 9.92 5.49 170.81 0.94 10.86 16 12 N -0.61 -17.06 3.13 -828.67 -2.59 -19.65 16 13 C 0.11 1.91 6.43 86.90 0.56 2.47 16 14 C -0.09 -1.27 3.67 -10.42 -0.04 -1.31 16 15 H 0.15 1.66 8.14 -2.38 -0.02 1.64 16 16 C 0.51 6.75 7.55 71.24 0.54 7.29 16 17 O -0.54 -9.99 16.33 21.97 0.36 -9.63 16 18 O -0.50 -4.32 13.41 -51.38 -0.69 -5.00 16 19 C -0.13 -2.49 6.40 30.59 0.20 -2.30 16 20 C 0.51 16.92 8.02 87.90 0.71 17.63 16 21 O -0.57 -27.57 17.59 -3.02 -0.05 -27.62 16 22 C 0.01 0.18 4.96 86.30 0.43 0.61 16 23 C 0.45 13.56 3.28 71.98 0.24 13.80 16 24 F -0.19 -6.42 17.13 44.97 0.77 -5.65 16 25 F -0.18 -4.53 17.32 44.97 0.78 -3.75 16 26 F -0.19 -7.05 14.63 44.97 0.66 -6.39 16 27 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 28 H 0.01 0.42 7.67 -2.38 -0.02 0.40 16 29 H 0.05 2.45 3.94 -2.39 -0.01 2.44 16 30 H 0.07 3.01 7.01 -2.39 -0.02 3.00 16 31 H 0.10 2.32 7.92 -2.39 -0.02 2.30 16 32 H 0.10 1.58 7.08 -2.39 -0.02 1.57 16 33 H 0.11 1.34 5.82 -2.38 -0.01 1.33 16 34 H 0.43 0.09 9.10 -74.06 -0.67 -0.58 16 35 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.12 2.01 7.89 -2.39 -0.02 1.99 16 37 H 0.14 2.49 5.26 -2.39 -0.01 2.48 16 38 H 0.11 2.17 7.98 -2.39 -0.02 2.15 16 Total: -1.00 -88.09 332.16 2.49 -85.60 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.40 Total: 5.19 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 4.56 Total: 27.28 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -6.19 Total: -106.12 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.38 Total: -42.26 kcal Atomic # 9 Polarization: -17.99 SS G_CDS: 2.21 Total: -15.79 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.89 Total: 46.09 kcal Total: -88.09 2.49 -85.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.196 kcal (2) G-P(sol) polarization free energy of solvation -88.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds