Wall clock time and date at job start Tue Mar 31 2020 13:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46942 * 269.99763 * 3 2 1 5 5 H 1.48495 * 109.46966 * 29.99487 * 3 2 1 6 6 H 1.48496 * 109.47202 * 149.99713 * 3 2 1 7 7 C 1.37874 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99964 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47056 * 184.08481 * 9 7 2 11 11 C 1.46897 * 110.99893 * 178.01801 * 10 9 7 12 12 N 1.46498 * 109.47413 * 206.71214 * 11 10 9 13 13 C 1.46762 * 124.35176 * 269.95488 * 12 11 10 14 14 C 1.54475 * 105.47488 * 197.03333 * 13 12 11 15 15 H 1.09006 * 110.97225 * 92.70290 * 14 13 12 16 16 C 1.50701 * 111.00325 * 216.44681 * 14 13 12 17 17 O 1.20829 * 119.99711 * 356.89341 * 16 14 13 18 18 O 1.34231 * 120.00113 * 176.88898 * 16 14 13 19 19 C 1.54622 * 101.76737 * 334.58134 * 14 13 12 20 20 C 1.34421 * 124.35065 * 89.97536 * 12 11 10 21 21 O 1.21284 * 124.94261 * 359.53178 * 20 12 11 22 22 C 1.46903 * 111.00062 * 301.97294 * 10 9 7 23 23 C 1.53005 * 109.46951 * 310.94662 * 22 10 9 24 24 F 1.39896 * 109.47194 * 65.70352 * 23 22 10 25 25 F 1.39899 * 109.46920 * 185.70154 * 23 22 10 26 26 F 1.39901 * 109.47148 * 305.70451 * 23 22 10 27 27 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46910 * 64.08617 * 9 7 2 29 29 H 1.08997 * 109.47164 * 304.08531 * 9 7 2 30 30 H 1.09006 * 109.47040 * 86.71235 * 11 10 9 31 31 H 1.09008 * 109.47153 * 326.71509 * 11 10 9 32 32 H 1.09002 * 110.24778 * 78.02834 * 13 12 11 33 33 H 1.09004 * 110.24294 * 316.03482 * 13 12 11 34 34 H 0.96701 * 117.00188 * 180.02562 * 18 16 14 35 35 H 1.09002 * 110.49077 * 143.47083 * 19 14 13 36 36 H 1.08997 * 110.49138 * 265.98932 * 19 14 13 37 37 H 1.08994 * 109.47037 * 70.94871 * 22 10 9 38 38 H 1.08997 * 109.46843 * 190.94846 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2026 -3.6139 0.1007 11 6 1.4999 -4.9029 0.1520 12 7 2.3272 -5.8822 0.8610 13 6 3.3099 -6.7594 0.2139 14 6 3.5996 -7.8796 1.2374 15 1 2.9485 -8.7379 1.0710 16 6 5.0491 -8.2894 1.1938 17 8 5.7940 -7.7901 0.3840 18 8 5.5128 -9.2089 2.0548 19 6 3.2622 -7.1800 2.5744 20 6 2.2834 -6.0933 2.1878 21 8 1.5644 -5.4983 2.9625 22 6 3.1664 -3.5834 -1.0075 23 6 2.4166 -3.4188 -2.3310 24 9 1.7969 -2.1650 -2.3632 25 9 3.3200 -3.5199 -3.3944 26 9 1.4473 -4.4210 -2.4457 27 1 -0.4850 0.8401 -0.0004 28 1 0.6800 -2.5899 -0.9224 29 1 0.5709 -2.5253 0.8531 30 1 1.3103 -5.2539 -0.8624 31 1 0.5525 -4.7797 0.6768 32 1 4.2222 -6.2053 -0.0072 33 1 2.8937 -7.1822 -0.7005 34 1 6.4497 -9.4392 1.9888 35 1 2.7981 -7.8829 3.2663 36 1 4.1601 -6.7480 3.0162 37 1 3.8506 -2.7460 -0.8709 38 1 3.7313 -4.5154 -1.0234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:46 Heat of formation + Delta-G solvation = -243.986507 kcal Electronic energy + Delta-G solvation = -29352.251869 eV Core-core repulsion = 24588.035730 eV Total energy + Delta-G solvation = -4764.216139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.57633 -47.17140 -46.79773 -41.14585 -39.75673 -36.99918 -36.63193 -35.95299 -32.89369 -32.05989 -28.84022 -27.96202 -27.32487 -24.95504 -23.58940 -23.24047 -21.07060 -20.83479 -19.46153 -18.47443 -18.09370 -17.86016 -17.51842 -17.29775 -16.34342 -16.14559 -15.74263 -15.57732 -15.33437 -14.68962 -14.52840 -14.21756 -13.95470 -13.76401 -13.72333 -13.53072 -13.34297 -13.32300 -13.13159 -13.02816 -12.76491 -12.21199 -12.02949 -11.85497 -11.66440 -11.65408 -11.45926 -11.25947 -11.06527 -10.94336 -10.72884 -10.63064 -10.01502 -9.71682 -9.33377 -8.75901 -8.46452 -7.62549 -6.04812 -4.05912 1.78353 2.46827 2.71401 3.10848 3.32385 3.38564 3.41552 3.43648 3.90829 4.14029 4.29914 4.43230 4.48148 4.53928 4.66901 4.72249 4.97210 4.99121 5.24706 5.32674 5.34145 5.35838 5.50317 5.54250 5.66866 5.87004 5.99821 6.10337 6.54014 6.87254 7.06425 7.25558 7.48712 7.58768 7.76231 7.99374 8.27410 8.34598 8.94123 9.56915 11.06489 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.004186 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.571787 B = 6686.907911 C = 7398.535154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.177 3.823 10 N -0.531 5.531 11 C 0.259 3.741 12 N -0.606 5.606 13 C 0.111 3.889 14 C -0.096 4.096 15 H 0.131 0.869 16 C 0.493 3.507 17 O -0.505 6.505 18 O -0.512 6.512 19 C -0.140 4.140 20 C 0.523 3.477 21 O -0.514 6.514 22 C 0.029 3.971 23 C 0.409 3.591 24 F -0.142 7.142 25 F -0.202 7.202 26 F -0.197 7.197 27 H 0.262 0.738 28 H 0.016 0.984 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.397 -18.788 -0.473 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.053 3.947 10 N -0.255 5.255 11 C 0.049 3.951 12 N -0.342 5.342 13 C -0.013 4.013 14 C -0.116 4.116 15 H 0.148 0.852 16 C 0.334 3.666 17 O -0.392 6.392 18 O -0.324 6.324 19 C -0.181 4.181 20 C 0.309 3.691 21 O -0.388 6.388 22 C -0.102 4.102 23 C 0.353 3.647 24 F -0.123 7.123 25 F -0.184 7.184 26 F -0.178 7.178 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.272 0.728 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.790 -17.964 0.153 19.581 hybrid contribution 0.639 0.712 -1.065 1.432 sum 8.429 -17.251 -0.913 19.222 Atomic orbital electron populations 1.69936 1.06018 1.26877 1.50259 1.24867 0.94793 0.99110 0.95063 0.86536 0.79827 0.83267 0.78050 1.20657 1.21214 1.19816 1.20928 0.93026 0.89578 1.50966 0.92066 1.20294 0.90348 0.86160 0.97877 1.62076 1.20559 1.04090 1.38752 1.22531 0.91308 0.83958 0.97295 1.48486 1.40281 1.37526 1.07944 1.22032 0.94222 0.90038 0.95027 1.21862 0.90747 1.00553 0.98428 0.85154 1.22875 0.90707 0.75729 0.77255 1.90772 1.58689 1.52707 1.37034 1.84516 1.34261 1.56234 1.57396 1.22333 1.01331 0.98203 0.96209 1.20527 0.82887 0.83405 0.82312 1.90779 1.42067 1.51911 1.54022 1.23565 0.97082 1.05702 0.83843 1.22521 0.78679 0.74873 0.88676 1.93393 1.82673 1.39849 1.96408 1.93116 1.67785 1.96056 1.61394 1.92934 1.66440 1.62255 1.96203 0.92829 0.96670 0.93912 0.89682 0.88335 0.89252 0.89327 0.72756 0.86872 0.87408 0.85938 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.59 6.97 -34.44 -0.24 -13.83 16 8 H 0.06 1.61 6.45 -52.49 -0.34 1.27 16 9 C 0.18 4.38 4.06 -4.97 -0.02 4.36 16 10 N -0.53 -10.67 4.86 -239.97 -1.17 -11.84 16 11 C 0.26 4.41 5.46 -63.32 -0.35 4.06 16 12 N -0.61 -8.59 3.15 -175.91 -0.55 -9.15 16 13 C 0.11 1.15 5.91 -3.13 -0.02 1.13 16 14 C -0.10 -0.76 3.65 -90.14 -0.33 -1.09 16 15 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 16 C 0.49 4.08 7.55 36.01 0.27 4.35 16 17 O -0.50 -5.80 16.29 -18.75 -0.31 -6.10 16 18 O -0.51 -2.94 13.42 -39.26 -0.53 -3.46 16 19 C -0.14 -1.35 6.41 -26.74 -0.17 -1.52 16 20 C 0.52 7.88 8.02 -10.86 -0.09 7.79 16 21 O -0.51 -10.29 17.60 5.55 0.10 -10.19 16 22 C 0.03 0.51 5.25 -3.82 -0.02 0.49 16 23 C 0.41 7.51 2.83 37.16 0.11 7.62 16 24 F -0.14 -3.22 12.67 2.25 0.03 -3.19 16 25 F -0.20 -3.45 17.32 2.25 0.04 -3.41 16 26 F -0.20 -3.41 13.80 2.25 0.03 -3.37 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.40 5.43 -51.93 -0.28 0.12 16 29 H 0.04 1.19 8.01 -51.93 -0.42 0.77 16 30 H 0.09 1.32 4.85 -51.93 -0.25 1.07 16 31 H 0.10 1.85 7.53 -51.92 -0.39 1.46 16 32 H 0.09 1.03 5.99 -51.93 -0.31 0.72 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 0.75 9.10 45.56 0.41 1.16 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 37 H 0.12 2.24 6.71 -51.93 -0.35 1.89 16 38 H 0.09 1.32 6.06 -51.93 -0.31 1.01 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -34.63 325.57 -5.74 -40.37 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.05 Total: -0.74 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: -0.95 Total: 15.05 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.98 Total: -46.37 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.73 Total: -19.76 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 0.10 Total: -9.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.63 -5.74 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.615 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds