Wall clock time and date at job start Tue Mar 31 2020 13:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46942 * 269.99763 * 3 2 1 5 5 H 1.48495 * 109.46966 * 29.99487 * 3 2 1 6 6 H 1.48496 * 109.47202 * 149.99713 * 3 2 1 7 7 C 1.37874 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99964 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47056 * 184.08481 * 9 7 2 11 11 C 1.46897 * 110.99893 * 178.01801 * 10 9 7 12 12 N 1.46498 * 109.47413 * 206.71214 * 11 10 9 13 13 C 1.46762 * 124.35176 * 269.95488 * 12 11 10 14 14 C 1.54475 * 105.47488 * 197.03333 * 13 12 11 15 15 H 1.09006 * 110.97225 * 92.70290 * 14 13 12 16 16 C 1.50701 * 111.00325 * 216.44681 * 14 13 12 17 17 O 1.20829 * 119.99711 * 356.89341 * 16 14 13 18 18 O 1.34231 * 120.00113 * 176.88898 * 16 14 13 19 19 C 1.54622 * 101.76737 * 334.58134 * 14 13 12 20 20 C 1.34421 * 124.35065 * 89.97536 * 12 11 10 21 21 O 1.21284 * 124.94261 * 359.53178 * 20 12 11 22 22 C 1.46903 * 111.00062 * 301.97294 * 10 9 7 23 23 C 1.53005 * 109.46951 * 310.94662 * 22 10 9 24 24 F 1.39896 * 109.47194 * 65.70352 * 23 22 10 25 25 F 1.39899 * 109.46920 * 185.70154 * 23 22 10 26 26 F 1.39901 * 109.47148 * 305.70451 * 23 22 10 27 27 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46910 * 64.08617 * 9 7 2 29 29 H 1.08997 * 109.47164 * 304.08531 * 9 7 2 30 30 H 1.09006 * 109.47040 * 86.71235 * 11 10 9 31 31 H 1.09008 * 109.47153 * 326.71509 * 11 10 9 32 32 H 1.09002 * 110.24778 * 78.02834 * 13 12 11 33 33 H 1.09004 * 110.24294 * 316.03482 * 13 12 11 34 34 H 0.96701 * 117.00188 * 180.02562 * 18 16 14 35 35 H 1.09002 * 110.49077 * 143.47083 * 19 14 13 36 36 H 1.08997 * 110.49138 * 265.98932 * 19 14 13 37 37 H 1.08994 * 109.47037 * 70.94871 * 22 10 9 38 38 H 1.08997 * 109.46843 * 190.94846 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2026 -3.6139 0.1007 11 6 1.4999 -4.9029 0.1520 12 7 2.3272 -5.8822 0.8610 13 6 3.3099 -6.7594 0.2139 14 6 3.5996 -7.8796 1.2374 15 1 2.9485 -8.7379 1.0710 16 6 5.0491 -8.2894 1.1938 17 8 5.7940 -7.7901 0.3840 18 8 5.5128 -9.2089 2.0548 19 6 3.2622 -7.1800 2.5744 20 6 2.2834 -6.0933 2.1878 21 8 1.5644 -5.4983 2.9625 22 6 3.1664 -3.5834 -1.0075 23 6 2.4166 -3.4188 -2.3310 24 9 1.7969 -2.1650 -2.3632 25 9 3.3200 -3.5199 -3.3944 26 9 1.4473 -4.4210 -2.4457 27 1 -0.4850 0.8401 -0.0004 28 1 0.6800 -2.5899 -0.9224 29 1 0.5709 -2.5253 0.8531 30 1 1.3103 -5.2539 -0.8624 31 1 0.5525 -4.7797 0.6768 32 1 4.2222 -6.2053 -0.0072 33 1 2.8937 -7.1822 -0.7005 34 1 6.4497 -9.4392 1.9888 35 1 2.7981 -7.8829 3.2663 36 1 4.1601 -6.7480 3.0162 37 1 3.8506 -2.7460 -0.8709 38 1 3.7313 -4.5154 -1.0234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:45 Heat of formation + Delta-G solvation = -270.853457 kcal Electronic energy + Delta-G solvation = -29353.416908 eV Core-core repulsion = 24588.035730 eV Total energy + Delta-G solvation = -4765.381178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.09080 -48.62348 -48.41233 -41.97809 -40.67516 -38.55723 -37.43915 -36.91003 -34.76019 -33.32647 -30.43818 -29.11860 -28.77700 -26.21243 -25.02939 -24.64105 -22.57554 -21.72139 -20.61476 -19.61565 -19.38942 -19.12221 -18.78246 -18.28347 -17.94485 -17.46927 -17.02515 -16.68269 -16.55826 -16.18780 -15.86225 -15.69405 -15.57595 -15.22901 -14.95260 -14.81833 -14.66360 -14.56122 -14.38130 -14.13473 -14.02585 -13.86708 -13.28044 -13.13833 -13.05359 -12.83901 -12.70949 -12.55083 -12.47698 -12.39893 -12.35469 -11.96741 -11.64250 -11.39094 -10.92155 -10.60580 -9.96661 -9.28322 -8.17591 -6.24617 1.17097 1.41316 1.42316 1.50096 1.53176 1.75127 1.93306 2.16760 2.41742 2.83169 2.96466 3.13683 3.17849 3.24362 3.33607 3.49212 3.84981 3.95837 4.05150 4.13511 4.38701 4.42789 4.49021 4.52472 4.61973 4.79152 4.88140 5.03849 5.10038 5.39542 5.60048 5.64838 5.84501 5.97827 6.20074 6.33802 6.83383 7.01608 7.13888 7.42211 8.94400 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.004186 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.571787 B = 6686.907911 C = 7398.535154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.197 3.803 10 N -0.543 5.543 11 C 0.264 3.736 12 N -0.606 5.606 13 C 0.103 3.897 14 C -0.082 4.082 15 H 0.167 0.833 16 C 0.504 3.496 17 O -0.540 6.540 18 O -0.503 6.503 19 C -0.125 4.125 20 C 0.510 3.490 21 O -0.576 6.576 22 C 0.035 3.965 23 C 0.412 3.588 24 F -0.171 7.171 25 F -0.190 7.190 26 F -0.190 7.190 27 H 0.262 0.738 28 H 0.003 0.997 29 H 0.000 1.000 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.432 0.568 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.612 -20.879 -0.826 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.267 5.267 11 C 0.054 3.946 12 N -0.340 5.340 13 C -0.019 4.019 14 C -0.101 4.101 15 H 0.184 0.816 16 C 0.347 3.653 17 O -0.430 6.430 18 O -0.317 6.317 19 C -0.165 4.165 20 C 0.298 3.702 21 O -0.454 6.454 22 C -0.096 4.096 23 C 0.356 3.644 24 F -0.152 7.152 25 F -0.172 7.172 26 F -0.172 7.172 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.294 0.706 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.066 -20.126 -0.212 22.504 hybrid contribution -0.007 1.232 -0.962 1.563 sum 10.059 -18.894 -1.173 21.437 Atomic orbital electron populations 1.70070 1.07620 1.27617 1.51790 1.25716 0.95544 1.02682 0.94936 0.85542 0.78742 0.79066 0.78272 1.19946 1.21191 1.18850 1.21252 0.93332 0.90486 1.49739 0.91607 1.19814 0.90305 0.87575 0.95186 1.61878 1.20233 1.04140 1.40432 1.22339 0.90775 0.83418 0.98113 1.48523 1.40377 1.36954 1.08142 1.22279 0.92853 0.90200 0.96595 1.21840 0.91559 1.00696 0.96005 0.81584 1.22746 0.90332 0.75438 0.76807 1.90778 1.59474 1.54125 1.38651 1.84470 1.35999 1.55066 1.56171 1.22264 0.99853 0.96726 0.97665 1.21536 0.82752 0.83888 0.81993 1.90745 1.44724 1.54434 1.55533 1.23618 0.96153 1.07439 0.82372 1.22534 0.78702 0.73902 0.89304 1.93333 1.83330 1.41985 1.96577 1.93135 1.67231 1.95916 1.60910 1.92938 1.66329 1.61684 1.96204 0.92910 0.97990 0.98222 0.87804 0.91183 0.90033 0.86818 0.70558 0.84287 0.86800 0.86567 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.51 -27.89 6.97 25.60 0.18 -27.71 16 8 H 0.07 3.46 6.45 -2.91 -0.02 3.44 16 9 C 0.20 10.13 4.06 85.56 0.35 10.48 16 10 N -0.54 -22.10 4.86 -913.14 -4.44 -26.54 16 11 C 0.26 9.07 5.46 170.81 0.93 10.00 16 12 N -0.61 -16.49 3.15 -829.03 -2.61 -19.10 16 13 C 0.10 1.82 5.91 86.83 0.51 2.33 16 14 C -0.08 -0.97 3.65 -10.49 -0.04 -1.00 16 15 H 0.17 0.86 8.14 -2.38 -0.02 0.84 16 16 C 0.50 6.45 7.55 71.24 0.54 6.99 16 17 O -0.54 -10.82 16.29 21.95 0.36 -10.47 16 18 O -0.50 -3.69 13.42 -51.42 -0.69 -4.38 16 19 C -0.13 -2.04 6.41 30.59 0.20 -1.85 16 20 C 0.51 15.05 8.02 87.90 0.71 15.76 16 21 O -0.58 -23.83 17.60 -3.04 -0.05 -23.89 16 22 C 0.03 1.19 5.25 86.30 0.45 1.64 16 23 C 0.41 14.76 2.83 71.98 0.20 14.97 16 24 F -0.17 -7.82 12.67 44.97 0.57 -7.25 16 25 F -0.19 -6.16 17.32 44.97 0.78 -5.38 16 26 F -0.19 -6.37 13.80 44.97 0.62 -5.75 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.00 0.14 5.43 -2.39 -0.01 0.13 16 29 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 30 H 0.10 3.14 4.85 -2.38 -0.01 3.13 16 31 H 0.07 2.79 7.53 -2.38 -0.02 2.78 16 32 H 0.08 1.64 5.99 -2.39 -0.01 1.63 16 33 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.43 -0.09 9.10 -74.06 -0.67 -0.76 16 35 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.80 7.89 -2.39 -0.02 1.78 16 37 H 0.12 4.13 6.71 -2.39 -0.02 4.11 16 38 H 0.13 3.40 6.06 -2.39 -0.01 3.38 16 Total: -1.00 -78.75 325.57 1.81 -76.95 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 0.47 Total: 2.51 kcal Atomic # 6 Polarization: 28.13 SS G_CDS: 4.49 Total: 32.62 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -6.77 Total: -101.57 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.39 Total: -38.74 kcal Atomic # 9 Polarization: -20.35 SS G_CDS: 1.97 Total: -18.38 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -78.75 1.81 -76.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.905 kcal (2) G-P(sol) polarization free energy of solvation -78.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds