Wall clock time and date at job start Tue Mar 31 2020 13:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 112.85005 * 2 1 4 4 C 1.34784 * 119.99704 * 73.46996 * 3 2 1 5 5 S 1.71197 * 120.00023 * 4.86373 * 4 3 2 6 6 N 1.34771 * 119.99727 * 184.86433 * 4 3 2 7 7 C 1.40073 * 119.99631 * 175.26219 * 6 4 3 8 8 C 1.38706 * 120.07883 * 47.01837 * 7 6 4 9 9 C 1.38196 * 120.02358 * 179.72101 * 8 7 6 10 10 C 1.38548 * 120.17026 * 0.54686 * 9 8 7 11 11 F 1.35105 * 119.92109 * 179.74278 * 10 9 8 12 12 C 1.38346 * 120.15798 * 359.72786 * 10 9 8 13 13 C 1.38734 * 119.97503 * 359.97438 * 12 10 9 14 14 O 1.35784 * 120.08394 * 179.97438 * 13 12 10 15 15 C 1.34802 * 117.00092 * 5.61746 * 14 13 12 16 16 H 1.08002 * 120.00270 * 5.20387 * 15 14 13 17 17 C 1.38629 * 119.99979 * 185.21550 * 15 14 13 18 18 N 1.31575 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00346 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46711 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47364 * 119.99490 * 19 17 15 22 22 H 1.48497 * 109.47324 * 239.99723 * 19 17 15 23 23 C 1.53780 * 113.61439 * 131.19821 * 2 1 3 24 24 C 1.53786 * 87.07948 * 89.11744 * 23 2 1 25 25 C 1.53780 * 87.17475 * 25.38758 * 24 23 2 26 26 H 1.09002 * 109.46770 * 283.77174 * 1 2 3 27 27 H 1.09001 * 109.47595 * 43.76889 * 1 2 3 28 28 H 1.08998 * 109.47553 * 163.77471 * 1 2 3 29 29 H 0.96998 * 120.00182 * 253.47072 * 3 2 1 30 30 H 0.97001 * 120.00296 * 355.26286 * 6 4 3 31 31 H 1.08000 * 119.98940 * 359.96956 * 8 7 6 32 32 H 1.07997 * 119.91723 * 180.25155 * 9 8 7 33 33 H 1.08003 * 120.01308 * 180.02562 * 12 10 9 34 34 H 0.97000 * 120.00331 * 180.02562 * 18 17 15 35 35 H 1.09000 * 113.61867 * 334.57156 * 23 2 1 36 36 H 1.08994 * 113.61237 * 203.65908 * 23 2 1 37 37 H 1.09000 * 113.61794 * 139.98207 * 24 23 2 38 38 H 1.09007 * 113.61347 * 270.79838 * 24 23 2 39 39 H 1.09000 * 113.61343 * 89.15550 * 25 24 23 40 40 H 1.09001 * 113.61499 * 220.05890 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 2.0545 2.1000 1.1191 5 16 1.4469 1.4321 2.5736 6 7 2.4884 3.3757 1.0929 7 6 2.3511 4.1855 2.2275 8 6 2.7211 3.7036 3.4745 9 6 2.5905 4.5056 4.5923 10 6 2.0796 5.7879 4.4734 11 9 1.9492 6.5658 5.5704 12 6 1.7030 6.2739 3.2341 13 6 1.8371 5.4764 2.1069 14 8 1.4677 5.9510 0.8895 15 6 1.0877 7.2428 0.8257 16 1 1.1664 7.8726 1.6996 17 6 0.5958 7.7628 -0.3614 18 7 0.5001 6.9957 -1.4261 19 14 0.0686 9.5527 -0.4497 20 1 0.2739 10.1950 0.8734 21 1 0.8802 10.2580 -1.4740 22 1 -1.3679 9.6281 -0.8184 23 6 2.1460 -0.9281 1.0602 24 6 2.0929 -2.0425 0.0018 25 6 2.1447 -0.9317 -1.0603 26 1 -0.3633 0.2446 0.9982 27 1 -0.3634 0.7421 -0.7109 28 1 -0.3634 -0.9867 -0.2871 29 1 2.5075 1.7042 -0.8053 30 1 2.8959 3.7330 0.2884 31 1 3.1152 2.7027 3.5713 32 1 2.8829 4.1301 5.5618 33 1 1.3054 7.2741 3.1441 34 1 0.1562 7.3596 -2.2569 35 1 1.4945 -1.1070 1.9156 36 1 3.1590 -0.6487 1.3494 37 1 2.9717 -2.6875 0.0024 38 1 1.1574 -2.6019 0.0033 39 1 3.1574 -0.6531 -1.3518 40 1 1.4923 -1.1134 -1.9144 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840735085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:59 Heat of formation + Delta-G solvation = -1.897507 kcal Electronic energy + Delta-G solvation = -25039.740494 eV Core-core repulsion = 21283.004522 eV Total energy + Delta-G solvation = -3756.735972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.29669 -40.25984 -39.52542 -37.56709 -36.12416 -33.59914 -32.48943 -29.51477 -29.17040 -28.11750 -26.02946 -25.58898 -24.36504 -23.03271 -21.83342 -21.68426 -19.25310 -18.41204 -18.25524 -17.85358 -17.10794 -16.13508 -15.50529 -15.37483 -15.22935 -15.17430 -14.97289 -14.34488 -13.97803 -13.69914 -13.58894 -13.51320 -13.27630 -12.94789 -12.45835 -12.37797 -12.17779 -12.13792 -11.70915 -11.38494 -11.25739 -11.18512 -10.99114 -10.79988 -10.71428 -10.61377 -10.53586 -10.31025 -9.83604 -9.33591 -9.03457 -8.10151 -7.53149 -7.21057 -6.67849 -6.60106 -4.26500 1.45599 1.98854 2.15681 2.35293 2.90555 3.01451 3.04065 3.09336 3.76767 3.82872 4.24734 4.27557 4.47499 4.70037 4.78350 4.81314 4.91408 5.06906 5.33944 5.47056 5.54483 5.57204 5.67056 5.72171 5.74444 5.82449 5.93456 6.01603 6.06644 6.23740 6.33742 6.40490 6.54172 6.59255 6.69284 6.85074 6.87973 6.96152 7.10376 7.28016 7.57726 7.68398 7.77215 8.78439 9.38002 10.49200 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.004299 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.957861 B = 6510.898181 C = 8482.956239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.159 3.841 3 N -0.680 5.680 4 C 0.566 3.434 5 S -0.645 6.645 6 N -0.599 5.599 7 C 0.024 3.976 8 C 0.010 3.990 9 C -0.240 4.240 10 C 0.150 3.850 11 F -0.149 7.149 12 C -0.268 4.268 13 C 0.178 3.822 14 O -0.168 6.168 15 C -0.393 4.393 16 H 0.096 0.904 17 C 0.043 3.957 18 N -0.860 5.860 19 Si 0.943 3.057 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.140 4.140 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.396 0.604 30 H 0.407 0.593 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.272 0.728 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -11.692 -0.552 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.074 3.926 3 N -0.310 5.310 4 C 0.206 3.794 5 S -0.515 6.515 6 N -0.220 5.220 7 C -0.070 4.070 8 C -0.013 4.013 9 C -0.261 4.261 10 C 0.131 3.869 11 F -0.128 7.128 12 C -0.289 4.289 13 C 0.121 3.879 14 O -0.070 6.070 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.162 4.162 18 N -0.494 5.494 19 Si 0.767 3.233 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.150 4.150 24 C -0.185 4.185 25 C -0.178 4.178 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.232 0.768 30 H 0.245 0.755 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.246 -12.245 -0.002 12.961 hybrid contribution 0.213 1.947 -1.516 2.477 sum 4.459 -10.298 -1.518 11.324 Atomic orbital electron populations 1.21961 0.91929 1.01881 1.04778 1.22040 0.94430 0.77620 0.98550 1.45080 1.58766 1.16511 1.10690 1.22294 0.81481 0.83767 0.91827 1.93051 1.66008 1.74584 1.17830 1.41887 1.56290 1.07942 1.15870 1.16475 1.14322 0.89629 0.86540 1.20788 0.92894 0.98320 0.89273 1.20428 1.12522 0.93555 0.99566 1.17549 0.98296 0.89026 0.82062 1.91424 1.93735 1.74836 1.52806 1.20813 1.13975 1.03512 0.90640 1.18826 0.91616 0.91093 0.86358 1.83950 1.71193 1.28823 1.23046 1.21427 1.43855 0.82569 0.99043 0.88630 1.25304 0.96002 1.00583 0.94275 1.70020 1.41956 1.36185 1.01214 0.85607 0.78665 0.79937 0.79092 1.18823 1.19992 1.19962 1.23237 1.01897 0.92688 0.97155 1.22881 1.02346 0.96431 0.96865 1.23349 1.01289 0.96067 0.97062 0.89299 0.92435 0.91427 0.76773 0.75491 0.83464 0.85683 0.83927 0.91855 0.88801 0.90110 0.91140 0.89845 0.89750 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.04 37.16 0.34 -1.47 16 2 C 0.16 1.83 1.08 -130.91 -0.14 1.68 16 3 N -0.68 -8.73 5.24 -48.46 -0.25 -8.98 16 4 C 0.57 9.32 7.61 -86.92 -0.66 8.66 16 5 S -0.65 -12.13 21.53 -107.50 -2.31 -14.44 16 6 N -0.60 -10.42 5.08 -11.26 -0.06 -10.48 16 7 C 0.02 0.49 5.91 -83.46 -0.49 -0.01 16 8 C 0.01 0.18 7.88 -39.42 -0.31 -0.13 16 9 C -0.24 -4.36 10.02 -39.48 -0.40 -4.75 16 10 C 0.15 2.96 7.29 -39.43 -0.29 2.67 16 11 F -0.15 -2.82 17.26 2.25 0.04 -2.78 16 12 C -0.27 -5.78 9.11 -39.36 -0.36 -6.13 16 13 C 0.18 4.02 6.66 -38.94 -0.26 3.77 16 14 O -0.17 -4.32 9.50 0.02 0.00 -4.32 16 15 C -0.39 -10.25 9.44 30.88 0.29 -9.96 16 16 H 0.10 2.35 5.29 -52.49 -0.28 2.07 16 17 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 18 N -0.86 -23.34 13.67 55.48 0.76 -22.58 16 19 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.11 -1.27 5.32 -25.92 -0.14 -1.40 16 24 C -0.15 -1.25 7.73 -25.92 -0.20 -1.45 16 25 C -0.14 -1.20 7.38 -25.83 -0.19 -1.39 16 26 H 0.09 1.33 6.91 -51.93 -0.36 0.97 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.67 7.39 -51.93 -0.38 0.28 16 29 H 0.40 4.21 8.77 -40.82 -0.36 3.85 16 30 H 0.41 6.50 8.84 -40.82 -0.36 6.14 16 31 H 0.15 2.63 6.25 -48.26 -0.30 2.32 16 32 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.14 3.09 5.71 -52.48 -0.30 2.79 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.09 1.24 7.33 -51.93 -0.38 0.86 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.65 7.72 -51.92 -0.40 0.25 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -29.72 344.35 -9.36 -39.08 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.79 Total: 13.70 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.91 Total: -8.90 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.45 Total: -42.04 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.00 Total: -4.32 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: -12.13 SS G_CDS: -2.31 Total: -14.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.72 -9.36 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840735085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.184 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds