Wall clock time and date at job start Tue Mar 31 2020 13:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 112.85005 * 2 1 4 4 C 1.34784 * 119.99704 * 73.46996 * 3 2 1 5 5 S 1.71197 * 120.00023 * 4.86373 * 4 3 2 6 6 N 1.34771 * 119.99727 * 184.86433 * 4 3 2 7 7 C 1.40073 * 119.99631 * 175.26219 * 6 4 3 8 8 C 1.38706 * 120.07883 * 47.01837 * 7 6 4 9 9 C 1.38196 * 120.02358 * 179.72101 * 8 7 6 10 10 C 1.38548 * 120.17026 * 0.54686 * 9 8 7 11 11 F 1.35105 * 119.92109 * 179.74278 * 10 9 8 12 12 C 1.38346 * 120.15798 * 359.72786 * 10 9 8 13 13 C 1.38734 * 119.97503 * 359.97438 * 12 10 9 14 14 O 1.35784 * 120.08394 * 179.97438 * 13 12 10 15 15 C 1.34802 * 117.00092 * 5.61746 * 14 13 12 16 16 H 1.08002 * 120.00270 * 5.20387 * 15 14 13 17 17 C 1.38629 * 119.99979 * 185.21550 * 15 14 13 18 18 N 1.31575 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00346 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46711 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47364 * 119.99490 * 19 17 15 22 22 H 1.48497 * 109.47324 * 239.99723 * 19 17 15 23 23 C 1.53780 * 113.61439 * 131.19821 * 2 1 3 24 24 C 1.53786 * 87.07948 * 89.11744 * 23 2 1 25 25 C 1.53780 * 87.17475 * 25.38758 * 24 23 2 26 26 H 1.09002 * 109.46770 * 283.77174 * 1 2 3 27 27 H 1.09001 * 109.47595 * 43.76889 * 1 2 3 28 28 H 1.08998 * 109.47553 * 163.77471 * 1 2 3 29 29 H 0.96998 * 120.00182 * 253.47072 * 3 2 1 30 30 H 0.97001 * 120.00296 * 355.26286 * 6 4 3 31 31 H 1.08000 * 119.98940 * 359.96956 * 8 7 6 32 32 H 1.07997 * 119.91723 * 180.25155 * 9 8 7 33 33 H 1.08003 * 120.01308 * 180.02562 * 12 10 9 34 34 H 0.97000 * 120.00331 * 180.02562 * 18 17 15 35 35 H 1.09000 * 113.61867 * 334.57156 * 23 2 1 36 36 H 1.08994 * 113.61237 * 203.65908 * 23 2 1 37 37 H 1.09000 * 113.61794 * 139.98207 * 24 23 2 38 38 H 1.09007 * 113.61347 * 270.79838 * 24 23 2 39 39 H 1.09000 * 113.61343 * 89.15550 * 25 24 23 40 40 H 1.09001 * 113.61499 * 220.05890 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 2.0545 2.1000 1.1191 5 16 1.4469 1.4321 2.5736 6 7 2.4884 3.3757 1.0929 7 6 2.3511 4.1855 2.2275 8 6 2.7211 3.7036 3.4745 9 6 2.5905 4.5056 4.5923 10 6 2.0796 5.7879 4.4734 11 9 1.9492 6.5658 5.5704 12 6 1.7030 6.2739 3.2341 13 6 1.8371 5.4764 2.1069 14 8 1.4677 5.9510 0.8895 15 6 1.0877 7.2428 0.8257 16 1 1.1664 7.8726 1.6996 17 6 0.5958 7.7628 -0.3614 18 7 0.5001 6.9957 -1.4261 19 14 0.0686 9.5527 -0.4497 20 1 0.2739 10.1950 0.8734 21 1 0.8802 10.2580 -1.4740 22 1 -1.3679 9.6281 -0.8184 23 6 2.1460 -0.9281 1.0602 24 6 2.0929 -2.0425 0.0018 25 6 2.1447 -0.9317 -1.0603 26 1 -0.3633 0.2446 0.9982 27 1 -0.3634 0.7421 -0.7109 28 1 -0.3634 -0.9867 -0.2871 29 1 2.5075 1.7042 -0.8053 30 1 2.8959 3.7330 0.2884 31 1 3.1152 2.7027 3.5713 32 1 2.8829 4.1301 5.5618 33 1 1.3054 7.2741 3.1441 34 1 0.1562 7.3596 -2.2569 35 1 1.4945 -1.1070 1.9156 36 1 3.1590 -0.6487 1.3494 37 1 2.9717 -2.6875 0.0024 38 1 1.1574 -2.6019 0.0033 39 1 3.1574 -0.6531 -1.3518 40 1 1.4923 -1.1134 -1.9144 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840735085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:58 Heat of formation + Delta-G solvation = -18.379417 kcal Electronic energy + Delta-G solvation = -25040.455203 eV Core-core repulsion = 21283.004522 eV Total energy + Delta-G solvation = -3757.450681 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.85695 -41.52213 -40.88308 -39.07419 -37.63999 -34.85925 -34.36124 -31.13229 -30.37176 -29.49613 -27.44807 -26.90932 -25.59589 -24.16074 -23.36272 -23.21384 -20.38536 -20.16126 -19.63445 -19.25070 -18.51740 -17.36668 -17.09305 -17.00917 -16.67945 -16.50768 -16.06765 -15.98806 -15.52977 -15.30429 -15.10195 -14.92313 -14.53253 -14.17190 -13.89811 -13.58859 -13.43887 -13.22243 -13.14493 -12.96081 -12.55006 -12.32014 -12.28006 -12.15237 -12.09801 -12.07233 -11.67694 -11.51974 -11.19682 -10.87735 -10.59782 -9.68094 -9.07656 -8.75111 -8.56485 -8.10136 -6.23260 -0.03081 0.51280 0.52740 0.95920 1.34579 1.40356 1.50697 1.59084 2.10378 2.54551 2.63347 2.98221 3.16512 3.39304 3.43100 3.66387 3.87176 3.95919 4.00072 4.19122 4.32328 4.42699 4.51873 4.64894 4.76473 4.88356 4.89746 4.95829 4.97280 5.08528 5.12701 5.21762 5.25183 5.27710 5.35846 5.39461 5.39769 5.53699 5.64837 5.87198 5.89067 6.11871 6.34594 6.88872 7.55783 8.64148 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.004299 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.957861 B = 6510.898181 C = 8482.956239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.142 3.858 3 N -0.659 5.659 4 C 0.574 3.426 5 S -0.689 6.689 6 N -0.603 5.603 7 C 0.033 3.967 8 C 0.011 3.989 9 C -0.218 4.218 10 C 0.146 3.854 11 F -0.143 7.143 12 C -0.278 4.278 13 C 0.153 3.847 14 O -0.202 6.202 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.008 4.008 18 N -0.907 5.907 19 Si 1.011 2.989 20 H -0.255 1.255 21 H -0.265 1.265 22 H -0.271 1.271 23 C -0.113 4.113 24 C -0.133 4.133 25 C -0.124 4.124 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.410 0.590 30 H 0.414 0.586 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.274 0.726 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -12.880 -0.663 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.058 3.942 3 N -0.288 5.288 4 C 0.212 3.788 5 S -0.559 6.559 6 N -0.226 5.226 7 C -0.062 4.062 8 C -0.011 4.011 9 C -0.238 4.238 10 C 0.126 3.874 11 F -0.122 7.122 12 C -0.299 4.299 13 C 0.098 3.902 14 O -0.107 6.107 15 C -0.491 4.491 16 H 0.118 0.882 17 C -0.208 4.208 18 N -0.543 5.543 19 Si 0.831 3.169 20 H -0.179 1.179 21 H -0.190 1.190 22 H -0.196 1.196 23 C -0.152 4.152 24 C -0.171 4.171 25 C -0.162 4.162 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.248 0.752 30 H 0.252 0.748 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.152 0.848 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.046 -13.486 -0.112 14.399 hybrid contribution 0.046 2.103 -1.327 2.487 sum 5.093 -11.383 -1.439 12.553 Atomic orbital electron populations 1.21902 0.92523 1.03115 1.02595 1.22447 0.94182 0.76895 1.00719 1.45234 1.56956 1.16674 1.09973 1.22095 0.81046 0.83390 0.92286 1.93118 1.67848 1.75160 1.19794 1.41790 1.57041 1.08082 1.15652 1.16658 1.12647 0.89041 0.87813 1.20983 0.92615 0.98717 0.88790 1.20818 1.09766 0.92411 1.00841 1.17544 0.98593 0.89649 0.81598 1.91439 1.93700 1.74802 1.52214 1.20870 1.14317 1.03307 0.91404 1.19206 0.92457 0.92430 0.86094 1.83925 1.73411 1.28891 1.24499 1.21797 1.44402 0.83265 0.99621 0.88244 1.26382 0.95781 1.04936 0.93664 1.70124 1.44012 1.38278 1.01920 0.84623 0.78225 0.74559 0.79511 1.17881 1.19018 1.19619 1.23141 1.00658 0.94320 0.97100 1.22848 1.03672 0.95835 0.94770 1.23333 1.01958 0.94168 0.96709 0.92390 0.93475 0.88655 0.75153 0.74761 0.82285 0.82462 0.84762 0.91650 0.91097 0.91095 0.89568 0.88796 0.88509 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.04 71.98 0.65 -2.74 16 2 C 0.14 3.04 1.08 4.19 0.00 3.04 16 3 N -0.66 -16.22 5.24 -307.23 -1.61 -17.83 16 4 C 0.57 18.71 7.61 179.05 1.36 20.08 16 5 S -0.69 -25.88 21.53 -56.49 -1.22 -27.10 16 6 N -0.60 -21.02 5.08 -189.53 -0.96 -21.98 16 7 C 0.03 1.32 5.91 38.23 0.23 1.54 16 8 C 0.01 0.41 7.88 22.37 0.18 0.58 16 9 C -0.22 -7.47 10.02 22.33 0.22 -7.25 16 10 C 0.15 5.59 7.29 22.37 0.16 5.75 16 11 F -0.14 -5.19 17.26 44.97 0.78 -4.41 16 12 C -0.28 -12.12 9.11 22.41 0.20 -11.92 16 13 C 0.15 7.05 6.66 22.69 0.15 7.20 16 14 O -0.20 -10.84 9.50 -22.84 -0.22 -11.05 16 15 C -0.42 -22.38 9.44 67.91 0.64 -21.73 16 16 H 0.10 5.06 5.29 -2.91 -0.02 5.04 16 17 C -0.01 -0.42 5.49 84.82 0.47 0.04 16 18 N -0.91 -50.74 13.67 21.61 0.30 -50.44 16 19 Si 1.01 40.54 29.55 68.60 2.03 42.57 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 C -0.11 -2.44 5.32 31.12 0.17 -2.27 16 24 C -0.13 -1.86 7.73 31.12 0.24 -1.62 16 25 C -0.12 -1.71 7.38 31.18 0.23 -1.48 16 26 H 0.06 1.75 6.91 -2.39 -0.02 1.74 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.68 7.39 -2.39 -0.02 1.67 16 29 H 0.41 8.09 8.77 -92.71 -0.81 7.27 16 30 H 0.41 13.34 8.84 -92.71 -0.82 12.52 16 31 H 0.16 5.43 6.25 -5.60 -0.03 5.40 16 32 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.13 5.99 5.71 -2.91 -0.02 5.97 16 34 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.07 1.87 7.33 -2.39 -0.02 1.85 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.15 7.72 -2.38 -0.02 1.14 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -66.48 344.35 3.46 -63.02 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.54 Total: 38.00 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.91 Total: -10.76 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -2.28 Total: -90.26 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.22 Total: -11.05 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: -25.88 SS G_CDS: -1.22 Total: -27.10 kcal Total: -66.48 3.46 -63.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840735085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.636 kcal (2) G-P(sol) polarization free energy of solvation -66.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds